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Conserved domains on  [gi|446061630|ref|WP_000139485|]
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MULTISPECIES: replication protein P [Escherichia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_lambda_P super family cl06169
Replication protein P; This family consists of several Bacteriophage lambda replication ...
 14-120 1.26e-18

Replication protein P; This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.


The actual alignment was detected with superfamily member pfam06992:

Pssm-ID: 462061  Cd Length: 162  Bit Score: 77.38  E-value: 1.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446061630   14 MDRCRAGET-WPPDLAEFVALISKSGANPFGL-TVDAVMEEYRRWRNESWRYDGSDKYPWSQPVLYHICLEMRSKGIERQ 91
Cdd:pfam06992  53 MRIARRQESpFWPSPGQFIAWCKAGDSEALGLpDLDELYREVMRYCANRGEYDSAEQYPWSSDAEYWLVTDLYRAMRATG 132

                          90       100
                  ....*....|....*....|....*....
gi 446061630   92 MTEGELKRLAERQLTKWAKHVSNGLSVPP 120
Cdd:pfam06992 133 LSEAELRKKAQKQLKAMAKRIAAGESIPE 161
 
Name Accession Description Interval E-value
Phage_lambda_P pfam06992
Replication protein P; This family consists of several Bacteriophage lambda replication ...
 14-120 1.26e-18

Replication protein P; This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.


Pssm-ID: 462061  Cd Length: 162  Bit Score: 77.38  E-value: 1.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446061630   14 MDRCRAGET-WPPDLAEFVALISKSGANPFGL-TVDAVMEEYRRWRNESWRYDGSDKYPWSQPVLYHICLEMRSKGIERQ 91
Cdd:pfam06992  53 MRIARRQESpFWPSPGQFIAWCKAGDSEALGLpDLDELYREVMRYCANRGEYDSAEQYPWSSDAEYWLVTDLYRAMRATG 132

                          90       100
                  ....*....|....*....|....*....
gi 446061630   92 MTEGELKRLAERQLTKWAKHVSNGLSVPP 120
Cdd:pfam06992 133 LSEAELRKKAQKQLKAMAKRIAAGESIPE 161
 
Name Accession Description Interval E-value
Phage_lambda_P pfam06992
Replication protein P; This family consists of several Bacteriophage lambda replication ...
 14-120 1.26e-18

Replication protein P; This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.


Pssm-ID: 462061  Cd Length: 162  Bit Score: 77.38  E-value: 1.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446061630   14 MDRCRAGET-WPPDLAEFVALISKSGANPFGL-TVDAVMEEYRRWRNESWRYDGSDKYPWSQPVLYHICLEMRSKGIERQ 91
Cdd:pfam06992  53 MRIARRQESpFWPSPGQFIAWCKAGDSEALGLpDLDELYREVMRYCANRGEYDSAEQYPWSSDAEYWLVTDLYRAMRATG 132

                          90       100
                  ....*....|....*....|....*....
gi 446061630   92 MTEGELKRLAERQLTKWAKHVSNGLSVPP 120
Cdd:pfam06992 133 LSEAELRKKAQKQLKAMAKRIAAGESIPE 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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