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Conserved domains on  [gi|446064582|ref|WP_000142437|]
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MULTISPECIES: DUF6404 family protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6404 pfam19942
Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene ...
 1-114 8.56e-40

Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001055) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide, in particular the yersiniabactin biosynthetic gene cluster from Escherichia coli. This family appears to be predominantly found in Proteobacteria.


:

Pssm-ID: 437774  Cd Length: 115  Bit Score: 128.55  E-value: 8.56e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446064582    1 MTFEQKKARAIALMDSKKMWRSNYAPPLLRILWRLGIRLPPLPFMPFWQVTLLMGGLWGISWGCAMWFMYWGPSGMVAGE 80
Cdd:pfam19942   1 MSFEEKLERALAELEAKGIWRSNYAPPLHRLLWKLGFKVPPPHYASFWQNFLLFGLFFGVVWGLFMWFLVWQGQGMPPGA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 446064582   81 AIIISITSGFLFGLLMASFHWWRRKVNRLPPWND 114
Cdd:pfam19942  81 AVAASLLAGVLFGLIMAGYYRWRRRKLGLPDWED 114
 
Name Accession Description Interval E-value
DUF6404 pfam19942
Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene ...
 1-114 8.56e-40

Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001055) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide, in particular the yersiniabactin biosynthetic gene cluster from Escherichia coli. This family appears to be predominantly found in Proteobacteria.


Pssm-ID: 437774  Cd Length: 115  Bit Score: 128.55  E-value: 8.56e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446064582    1 MTFEQKKARAIALMDSKKMWRSNYAPPLLRILWRLGIRLPPLPFMPFWQVTLLMGGLWGISWGCAMWFMYWGPSGMVAGE 80
Cdd:pfam19942   1 MSFEEKLERALAELEAKGIWRSNYAPPLHRLLWKLGFKVPPPHYASFWQNFLLFGLFFGVVWGLFMWFLVWQGQGMPPGA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 446064582   81 AIIISITSGFLFGLLMASFHWWRRKVNRLPPWND 114
Cdd:pfam19942  81 AVAASLLAGVLFGLIMAGYYRWRRRKLGLPDWED 114
 
Name Accession Description Interval E-value
DUF6404 pfam19942
Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene ...
 1-114 8.56e-40

Family of unknown function (DUF6404); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0001055) is described by MIBiG as an example of the following biosynthetic classes, NRP (non-ribosomal peptide) and polyketide, in particular the yersiniabactin biosynthetic gene cluster from Escherichia coli. This family appears to be predominantly found in Proteobacteria.


Pssm-ID: 437774  Cd Length: 115  Bit Score: 128.55  E-value: 8.56e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446064582    1 MTFEQKKARAIALMDSKKMWRSNYAPPLLRILWRLGIRLPPLPFMPFWQVTLLMGGLWGISWGCAMWFMYWGPSGMVAGE 80
Cdd:pfam19942   1 MSFEEKLERALAELEAKGIWRSNYAPPLHRLLWKLGFKVPPPHYASFWQNFLLFGLFFGVVWGLFMWFLVWQGQGMPPGA 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 446064582   81 AIIISITSGFLFGLLMASFHWWRRKVNRLPPWND 114
Cdd:pfam19942  81 AVAASLLAGVLFGLIMAGYYRWRRRKLGLPDWED 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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