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Conserved domains on  [gi|446066759|ref|WP_000144614|]
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MULTISPECIES: phage NinH family protein [Enterobacteriaceae]

Protein Classification

phage NinH family protein( domain architecture ID 10533703)

phage NinH family protein similar to Escherichia virus Lambda protein ninH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_NinH pfam06322
Phage NinH protein; This family consists of several phage NinH proteins. The function of this ...
 1-60 7.93e-38

Phage NinH protein; This family consists of several phage NinH proteins. The function of this family is unknown.


:

Pssm-ID: 428886  Cd Length: 60  Bit Score: 119.71  E-value: 7.93e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446066759   1 MTFSVKTIPDMLVEAYGNQTEVARRLKCSRGTVRKYVDDKDGKMHAIVNDVLMVHRGWSE 60
Cdd:pfam06322  1 MTFSVKTIPDMLIEAYGNQTEVARRLKCHRGTVRKYLDDKDAKMHAIVNDVLMIHQGGRE 60
 
Name Accession Description Interval E-value
Phage_NinH pfam06322
Phage NinH protein; This family consists of several phage NinH proteins. The function of this ...
 1-60 7.93e-38

Phage NinH protein; This family consists of several phage NinH proteins. The function of this family is unknown.


Pssm-ID: 428886  Cd Length: 60  Bit Score: 119.71  E-value: 7.93e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446066759   1 MTFSVKTIPDMLVEAYGNQTEVARRLKCSRGTVRKYVDDKDGKMHAIVNDVLMVHRGWSE 60
Cdd:pfam06322  1 MTFSVKTIPDMLIEAYGNQTEVARRLKCHRGTVRKYLDDKDAKMHAIVNDVLMIHQGGRE 60
COG4584 COG4584
Transposase [Mobilome: prophages, transposons];
18-38 1.28e-03

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 34.81  E-value: 1.28e-03
                         10        20
                 ....*....|....*....|.
gi 446066759  18 NQTEVARRLKCSRGTVRKYVD 38
Cdd:COG4584   19 SIREIARELGISRNTVRKYLR 39
transpos_IS21 NF033546
IS21 family transposase;
18-41 3.90e-03

IS21 family transposase;


Pssm-ID: 468077 [Multi-domain]  Cd Length: 296  Bit Score: 33.34  E-value: 3.90e-03
                         10        20
                 ....*....|....*....|....
gi 446066759  18 NQTEVARRLKCSRGTVRKYVDDKD 41
Cdd:NF033546  10 SIREIARELGISRNTVRKYLRRAG 33
 
Name Accession Description Interval E-value
Phage_NinH pfam06322
Phage NinH protein; This family consists of several phage NinH proteins. The function of this ...
 1-60 7.93e-38

Phage NinH protein; This family consists of several phage NinH proteins. The function of this family is unknown.


Pssm-ID: 428886  Cd Length: 60  Bit Score: 119.71  E-value: 7.93e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446066759   1 MTFSVKTIPDMLVEAYGNQTEVARRLKCSRGTVRKYVDDKDGKMHAIVNDVLMVHRGWSE 60
Cdd:pfam06322  1 MTFSVKTIPDMLIEAYGNQTEVARRLKCHRGTVRKYLDDKDAKMHAIVNDVLMIHQGGRE 60
COG4584 COG4584
Transposase [Mobilome: prophages, transposons];
18-38 1.28e-03

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 34.81  E-value: 1.28e-03
                         10        20
                 ....*....|....*....|.
gi 446066759  18 NQTEVARRLKCSRGTVRKYVD 38
Cdd:COG4584   19 SIREIARELGISRNTVRKYLR 39
transpos_IS21 NF033546
IS21 family transposase;
18-41 3.90e-03

IS21 family transposase;


Pssm-ID: 468077 [Multi-domain]  Cd Length: 296  Bit Score: 33.34  E-value: 3.90e-03
                         10        20
                 ....*....|....*....|....
gi 446066759  18 NQTEVARRLKCSRGTVRKYVDDKD 41
Cdd:NF033546  10 SIREIARELGISRNTVRKYLRRAG 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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