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Conserved domains on  [gi|446076738|ref|WP_000154593|]
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MULTISPECIES: GMC family oxidoreductase [Acinetobacter]

Protein Classification

GMC family oxidoreductase( domain architecture ID 11455227)

GMC (glucose-methanol-choline) family oxidoreductase is a flavoprotein that catalyzes the oxidation of an alcohol moiety to the corresponding aldehyde with the concomitant reduction of flavin adenine dinucleotide (FAD)

EC:  1.-.-.-
Gene Ontology:  GO:0016491|GO:0050660
PubMed:  23578136|1542121
SCOP:  3000055

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GMC_oxred_C pfam05199
GMC oxidoreductase; This domain found associated with pfam00732.
 469-526 4.54e-17

GMC oxidoreductase; This domain found associated with pfam00732.


:

Pssm-ID: 398739 [Multi-domain]  Cd Length: 143  Bit Score: 78.21  E-value: 4.54e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 446076738  469 TAHCMGGCAIASSPERGVVDGQNRVFNYKNLYVVDGSMLGANLGVNPSLTITALAERA 526
Cdd:pfam05199  86 SYHPMGTCRMGADPDDAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 143
BetA super family cl34456
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 7-526 2.58e-14

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


The actual alignment was detected with superfamily member COG2303:

Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 75.63  E-value: 2.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738   7 DYDYLIIGSGFGGSVSACRLTE-KGYSVAVMEMGRrwkaedfaknnWNTRRWIWRPGMKLFGYFNMR------------- 72
Cdd:COG2303    4 EYDYVIVGAGSAGCVLANRLSEdAGLRVLLLEAGG-----------RDDDPLIRMPAGYAKLLGNPRydwryetepqpgl 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738  73 FFRHVTIICGNAVGGGSITYAntLLVPPEHIWDEGTWAD--AADWK-NEMPQHYAEAERM-------------LGVTDNK 136
Cdd:COG2303   73 NGRRLYWPRGKVLGGSSSING--MIYVRGQPEDFDLWAQlgNQGWGyDDVLPYFKRAEDNergadayhgrsgpLPVSDPP 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 137 IFGPADHMLKKMGEAVGVGHTfkptrvatffppegeeggktyPDpyFNGegpdrGTCTACGGCMTGCKHNAKNTLDKNYL 216
Cdd:COG2303  151 LPNPLSDAFIEAAEELGIPRA---------------------DD--FNG-----GACEGCGFCQVTCRNGARWSAARAYL 202

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 217 YFAEKN-------GAKVyeeTKVV-DvkplNGKADGsdgyeVTTECssswfNKQRRTWRVRN-VIFSASSLGTQEMLFRl 287
Cdd:COG2303  203 PPALKRpnltvrtGALV---TRILfD----GGRATG-----VEYRD-----DGEEHTVRAAReVILAAGAINSPQLLLL- 264

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 288 kqSGslpnisddLGNRVRTNAESILGVRFFGkdvdmskGVaiGSSiYIDHdthieatryqsgsdaMGLMCTYMAKGKPGW 367
Cdd:COG2303  265 --SG--------IGPASHLREHGIPVVHDLP-------GV--GRN-LQDH---------------LEVSVVFRFKEPVTL 309

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 368 TRIFFWLWALicHPFIFLR---MSNPVS-----------FARQTLIFLVMQTADASINMRLK---RNWFWPFGKVLSSE- 429
Cdd:COG2303  310 NKSLRKARIG--LQYLLTRsgpLTSNVAeaggffrsdpgLERPDLQFHFLPLGLTPRWGKKAlhdGHGFTAHVEQLRPEs 387

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 430 ---------------------------------GKKLPVYIPQANAFTEKVAK-MFNGHPMTTITEILF--NVPFTA-HC 472
Cdd:COG2303  388 rgrvtldsadplgaplirpnylsdendrrvlvaGVRLAREIAAQPALAPYRGEeILPGPDVQSDEELAFirARAYTIyHP 467

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446076738 473 MGGCAIASSPErGVVDGQNRVFNYKNLYVVDGSMLGANLGVNPSLTITALAERA 526
Cdd:COG2303  468 VGTCRMGTDPD-SVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKA 520
 
Name Accession Description Interval E-value
GMC_oxred_C pfam05199
GMC oxidoreductase; This domain found associated with pfam00732.
 469-526 4.54e-17

GMC oxidoreductase; This domain found associated with pfam00732.


Pssm-ID: 398739 [Multi-domain]  Cd Length: 143  Bit Score: 78.21  E-value: 4.54e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 446076738  469 TAHCMGGCAIASSPERGVVDGQNRVFNYKNLYVVDGSMLGANLGVNPSLTITALAERA 526
Cdd:pfam05199  86 SYHPMGTCRMGADPDDAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 143
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 7-526 2.58e-14

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 75.63  E-value: 2.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738   7 DYDYLIIGSGFGGSVSACRLTE-KGYSVAVMEMGRrwkaedfaknnWNTRRWIWRPGMKLFGYFNMR------------- 72
Cdd:COG2303    4 EYDYVIVGAGSAGCVLANRLSEdAGLRVLLLEAGG-----------RDDDPLIRMPAGYAKLLGNPRydwryetepqpgl 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738  73 FFRHVTIICGNAVGGGSITYAntLLVPPEHIWDEGTWAD--AADWK-NEMPQHYAEAERM-------------LGVTDNK 136
Cdd:COG2303   73 NGRRLYWPRGKVLGGSSSING--MIYVRGQPEDFDLWAQlgNQGWGyDDVLPYFKRAEDNergadayhgrsgpLPVSDPP 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 137 IFGPADHMLKKMGEAVGVGHTfkptrvatffppegeeggktyPDpyFNGegpdrGTCTACGGCMTGCKHNAKNTLDKNYL 216
Cdd:COG2303  151 LPNPLSDAFIEAAEELGIPRA---------------------DD--FNG-----GACEGCGFCQVTCRNGARWSAARAYL 202

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 217 YFAEKN-------GAKVyeeTKVV-DvkplNGKADGsdgyeVTTECssswfNKQRRTWRVRN-VIFSASSLGTQEMLFRl 287
Cdd:COG2303  203 PPALKRpnltvrtGALV---TRILfD----GGRATG-----VEYRD-----DGEEHTVRAAReVILAAGAINSPQLLLL- 264

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 288 kqSGslpnisddLGNRVRTNAESILGVRFFGkdvdmskGVaiGSSiYIDHdthieatryqsgsdaMGLMCTYMAKGKPGW 367
Cdd:COG2303  265 --SG--------IGPASHLREHGIPVVHDLP-------GV--GRN-LQDH---------------LEVSVVFRFKEPVTL 309

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 368 TRIFFWLWALicHPFIFLR---MSNPVS-----------FARQTLIFLVMQTADASINMRLK---RNWFWPFGKVLSSE- 429
Cdd:COG2303  310 NKSLRKARIG--LQYLLTRsgpLTSNVAeaggffrsdpgLERPDLQFHFLPLGLTPRWGKKAlhdGHGFTAHVEQLRPEs 387

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 430 ---------------------------------GKKLPVYIPQANAFTEKVAK-MFNGHPMTTITEILF--NVPFTA-HC 472
Cdd:COG2303  388 rgrvtldsadplgaplirpnylsdendrrvlvaGVRLAREIAAQPALAPYRGEeILPGPDVQSDEELAFirARAYTIyHP 467

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446076738 473 MGGCAIASSPErGVVDGQNRVFNYKNLYVVDGSMLGANLGVNPSLTITALAERA 526
Cdd:COG2303  468 VGTCRMGTDPD-SVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKA 520
GMC_oxred_N pfam00732
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
 75-295 8.35e-08

GMC oxidoreductase; This family of proteins bind FAD as a cofactor.


Pssm-ID: 366272 [Multi-domain]  Cd Length: 218  Bit Score: 53.05  E-value: 8.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738   75 RHVTIICGNAVGGGSITYANTLLVPPEHIWDEgtWADAADWKNEMPQHYAEA----ERMLGVTDNKIF-GPADHMLKKMG 149
Cdd:pfam00732  17 RRMILPAGSTVGGGSSVNWSACIRTPAAVLDE--WASEFGLEGWGYDDYLPYmdkvEGPLGVTTKGIEeSPLNQALLKAA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738  150 EAVGVGHTFKPTRvatffppegeeggktypdpyFNGegpdrgtCTACGGCMTGCKHNAKNTLDKNYLYFAEKNGAKVYEE 229
Cdd:pfam00732  95 EELGYPVEAVPRN--------------------SNG-------CHYCGFCGLGCPTGAKQSTARTWLRPALERNLRILTG 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446076738  230 TKV--VDVKPLNGKADGsdgyeVTTECSSSwfNKQRRTWRVRNVIFSASSLGTQEMLFRlkqSGSLPN 295
Cdd:pfam00732 148 AKAekIIILGRGGRAVG-----VEARDGGG--GIKRLITAAKEVVVAAGALNTPPLLLR---SGLGKN 205
PRK02106 PRK02106
choline dehydrogenase; Validated
 8-40 3.83e-05

choline dehydrogenase; Validated


Pssm-ID: 235000 [Multi-domain]  Cd Length: 560  Bit Score: 46.36  E-value: 3.83e-05
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446076738   8 YDYLIIGSGFGGSVSACRLTE-KGYSVAVMEMGR 40
Cdd:PRK02106   6 YDYIIIGAGSAGCVLANRLSEdPDVSVLLLEAGG 39
 
Name Accession Description Interval E-value
GMC_oxred_C pfam05199
GMC oxidoreductase; This domain found associated with pfam00732.
 469-526 4.54e-17

GMC oxidoreductase; This domain found associated with pfam00732.


Pssm-ID: 398739 [Multi-domain]  Cd Length: 143  Bit Score: 78.21  E-value: 4.54e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 446076738  469 TAHCMGGCAIASSPERGVVDGQNRVFNYKNLYVVDGSMLGANLGVNPSLTITALAERA 526
Cdd:pfam05199  86 SYHPMGTCRMGADPDDAVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 143
BetA COG2303
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General ...
 7-526 2.58e-14

Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]; Choline dehydrogenase or related flavoprotein is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441878 [Multi-domain]  Cd Length: 531  Bit Score: 75.63  E-value: 2.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738   7 DYDYLIIGSGFGGSVSACRLTE-KGYSVAVMEMGRrwkaedfaknnWNTRRWIWRPGMKLFGYFNMR------------- 72
Cdd:COG2303    4 EYDYVIVGAGSAGCVLANRLSEdAGLRVLLLEAGG-----------RDDDPLIRMPAGYAKLLGNPRydwryetepqpgl 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738  73 FFRHVTIICGNAVGGGSITYAntLLVPPEHIWDEGTWAD--AADWK-NEMPQHYAEAERM-------------LGVTDNK 136
Cdd:COG2303   73 NGRRLYWPRGKVLGGSSSING--MIYVRGQPEDFDLWAQlgNQGWGyDDVLPYFKRAEDNergadayhgrsgpLPVSDPP 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 137 IFGPADHMLKKMGEAVGVGHTfkptrvatffppegeeggktyPDpyFNGegpdrGTCTACGGCMTGCKHNAKNTLDKNYL 216
Cdd:COG2303  151 LPNPLSDAFIEAAEELGIPRA---------------------DD--FNG-----GACEGCGFCQVTCRNGARWSAARAYL 202

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 217 YFAEKN-------GAKVyeeTKVV-DvkplNGKADGsdgyeVTTECssswfNKQRRTWRVRN-VIFSASSLGTQEMLFRl 287
Cdd:COG2303  203 PPALKRpnltvrtGALV---TRILfD----GGRATG-----VEYRD-----DGEEHTVRAAReVILAAGAINSPQLLLL- 264

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 288 kqSGslpnisddLGNRVRTNAESILGVRFFGkdvdmskGVaiGSSiYIDHdthieatryqsgsdaMGLMCTYMAKGKPGW 367
Cdd:COG2303  265 --SG--------IGPASHLREHGIPVVHDLP-------GV--GRN-LQDH---------------LEVSVVFRFKEPVTL 309

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 368 TRIFFWLWALicHPFIFLR---MSNPVS-----------FARQTLIFLVMQTADASINMRLK---RNWFWPFGKVLSSE- 429
Cdd:COG2303  310 NKSLRKARIG--LQYLLTRsgpLTSNVAeaggffrsdpgLERPDLQFHFLPLGLTPRWGKKAlhdGHGFTAHVEQLRPEs 387

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738 430 ---------------------------------GKKLPVYIPQANAFTEKVAK-MFNGHPMTTITEILF--NVPFTA-HC 472
Cdd:COG2303  388 rgrvtldsadplgaplirpnylsdendrrvlvaGVRLAREIAAQPALAPYRGEeILPGPDVQSDEELAFirARAYTIyHP 467

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446076738 473 MGGCAIASSPErGVVDGQNRVFNYKNLYVVDGSMLGANLGVNPSLTITALAERA 526
Cdd:COG2303  468 VGTCRMGTDPD-SVVDPRLRVHGVENLRVVDASVMPTITSGNTNAPTIMLAEKA 520
GMC_oxred_N pfam00732
GMC oxidoreductase; This family of proteins bind FAD as a cofactor.
 75-295 8.35e-08

GMC oxidoreductase; This family of proteins bind FAD as a cofactor.


Pssm-ID: 366272 [Multi-domain]  Cd Length: 218  Bit Score: 53.05  E-value: 8.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738   75 RHVTIICGNAVGGGSITYANTLLVPPEHIWDEgtWADAADWKNEMPQHYAEA----ERMLGVTDNKIF-GPADHMLKKMG 149
Cdd:pfam00732  17 RRMILPAGSTVGGGSSVNWSACIRTPAAVLDE--WASEFGLEGWGYDDYLPYmdkvEGPLGVTTKGIEeSPLNQALLKAA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738  150 EAVGVGHTFKPTRvatffppegeeggktypdpyFNGegpdrgtCTACGGCMTGCKHNAKNTLDKNYLYFAEKNGAKVYEE 229
Cdd:pfam00732  95 EELGYPVEAVPRN--------------------SNG-------CHYCGFCGLGCPTGAKQSTARTWLRPALERNLRILTG 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446076738  230 TKV--VDVKPLNGKADGsdgyeVTTECSSSwfNKQRRTWRVRNVIFSASSLGTQEMLFRlkqSGSLPN 295
Cdd:pfam00732 148 AKAekIIILGRGGRAVG-----VEARDGGG--GIKRLITAAKEVVVAAGALNTPPLLLR---SGLGKN 205
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
12-41 1.32e-05

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 42.90  E-value: 1.32e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 446076738   12 IIGSGFGGSVSACRLTEKGYSVAVMEMGRR 41
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDR 30
PRK02106 PRK02106
choline dehydrogenase; Validated
 8-40 3.83e-05

choline dehydrogenase; Validated


Pssm-ID: 235000 [Multi-domain]  Cd Length: 560  Bit Score: 46.36  E-value: 3.83e-05
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446076738   8 YDYLIIGSGFGGSVSACRLTE-KGYSVAVMEMGR 40
Cdd:PRK02106   6 YDYIIIGAGSAGCVLANRLSEdPDVSVLLLEAGG 39
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 7-37 4.63e-05

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 46.00  E-value: 4.63e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 446076738   7 DYDYLIIGSGFGGSVSACRLTEKGYSVAVME 37
Cdd:COG1233    3 MYDVVVIGAGIGGLAAAALLARAGYRVTVLE 33
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 7-66 1.41e-04

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 44.47  E-value: 1.41e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446076738   7 DYDYLIIGSGFGGSVSACRLTEKGYSVAVMEmgrrwKAEDFAkNNWNTRRWiwrPGMKLF 66
Cdd:COG2072    6 HVDVVVIGAGQAGLAAAYHLRRAGIDFVVLE-----KADDVG-GTWRDNRY---PGLRLD 56
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 5-40 7.58e-04

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 42.00  E-value: 7.58e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 446076738   5 NYDYDYLIIGSGFGGSVSACRLTEKGYSVAVMEMGR 40
Cdd:COG1249    1 MKDYDLVVIGAGPGGYVAAIRAAQLGLKVALVEKGR 36
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 7-37 1.64e-03

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 40.90  E-value: 1.64e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 446076738   7 DYDYLIIGSGFGGSVSACRLTEKGYSVAVME 37
Cdd:PRK06416   4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE 34
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
7-40 8.10e-03

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 38.73  E-value: 8.10e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446076738   7 DYDYLIIGSGFGGSVSACRLTEKGYSVAVMEMGR 40
Cdd:COG0665    2 TADVVVIGGGIAGLSTAYHLARRGLDVTVLERGR 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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