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Conserved domains on  [gi|446077453|ref|WP_000155308|]
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MULTISPECIES: NUDIX domain-containing protein [Acinetobacter]

Protein Classification

NUDIX hydrolase( domain architecture ID 19271407)

NUDIX hydrolase catalyzes the hydrolysis of nucleoside diphosphates linked to other moieties (X); it requires a divalent cation, such as Mg2+ or Mn2+ for its activity

CATH:  3.90.79.10
EC:  3.6.1.-
Gene Ontology:  GO:0016818|GO:0046872
SCOP:  3000098

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG4111 COG4111
Uncharacterized conserved protein [Function unknown];
54-224 1.58e-58

Uncharacterized conserved protein [Function unknown];


:

Pssm-ID: 443287 [Multi-domain]  Cd Length: 170  Bit Score: 183.45  E-value: 1.58e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  54 ALPGGFadLTHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDPRGWAVTILYFALIDFNAyQHQALAEYSEWVPVA 133
Cdd:COG4111    1 ALPGGF--VREHESLEDAARRWLAEQTGLELGYLEQLYTFGDPDRDPRGRVISVAYLALVREEE-LRADDADDAAWFPVD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453 134 KAQdlALAFDHNELLSLALERLTNKTRYTALPASLMPELFTLTELQTIYEIILGQSLDKKAFRRRMIEAGAVEETSH-SK 212
Cdd:COG4111   78 ELP--PLAFDHRRILATALERLRAKLEYTPIGFELLPEKFTLSELQRLYEAILGRKLDKRNFRRKILSLGLLEETGEkQT 155
                        170
                 ....*....|..
gi 446077453 213 IVGKRPAQLYRY 224
Cdd:COG4111  156 GGAGRPAKLYRF 167
NUDIX_Hydrolase super family cl00447
NUDIX hydrolase superfamily; NUDIX hydrolase is a superfamily of enzymes found in all three ...
20-58 3.59e-04

NUDIX hydrolase superfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


The actual alignment was detected with superfamily member cd03430:

Pssm-ID: 469772 [Multi-domain]  Cd Length: 146  Bit Score: 39.92  E-value: 3.59e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 446077453  20 APLLTVDMAIFsvfNGQLQVLLIKRPNFPAKDQWALPGG 58
Cdd:cd03430   13 TPLVSIDLIIR---NEDGEILLGKRNNRPAQGYWFVPGG 48
 
Name Accession Description Interval E-value
COG4111 COG4111
Uncharacterized conserved protein [Function unknown];
54-224 1.58e-58

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443287 [Multi-domain]  Cd Length: 170  Bit Score: 183.45  E-value: 1.58e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  54 ALPGGFadLTHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDPRGWAVTILYFALIDFNAyQHQALAEYSEWVPVA 133
Cdd:COG4111    1 ALPGGF--VREHESLEDAARRWLAEQTGLELGYLEQLYTFGDPDRDPRGRVISVAYLALVREEE-LRADDADDAAWFPVD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453 134 KAQdlALAFDHNELLSLALERLTNKTRYTALPASLMPELFTLTELQTIYEIILGQSLDKKAFRRRMIEAGAVEETSH-SK 212
Cdd:COG4111   78 ELP--PLAFDHRRILATALERLRAKLEYTPIGFELLPEKFTLSELQRLYEAILGRKLDKRNFRRKILSLGLLEETGEkQT 155
                        170
                 ....*....|..
gi 446077453 213 IVGKRPAQLYRY 224
Cdd:COG4111  156 GGAGRPAKLYRF 167
NUDIX_NadM_like cd18873
bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase and similar proteins; ...
21-153 4.00e-50

bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase and similar proteins; Bacterial NadM-Nudix is a bifunctional enzyme containing a nicotinamide mononucleotide (NMN) adenylyltransferase (NMNAT) and an ADP-ribose pyrophosphatase (ADPRase) domain. NMNAT was initially identified as an NAD+ synthase that catalyzes the reversible conversion of NMN to NAD+ in the final step of both the de novo biosynthesis and salvage pathways in most organisms across all three kingdoms of life ADPRase is a member of the NUDIX family proteins, catalyzes the metal-induced and concerted general acid-base hydrolysis of ADP ribose (ADPR) into AMP and ribose-5'-phosphate (R5P). Additional members in this cd include bacterial transcriptional regulator, NrtR, which represses the transcription of NAD biosynthetic genes in vitro and adenosine diphosphate ribose (ADPR), as well as NadQ, a NUDIX-like ATP-responsive regulator of NAD biosynthesis. Members of the NUDIX hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance _ "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.


Pssm-ID: 467585 [Multi-domain]  Cd Length: 132  Bit Score: 160.79  E-value: 4.00e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  21 PLLTVDMAIFSVFNGQLQVLLIKRPNFPAKDQWALPGGFADltHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDP 100
Cdd:cd18873    1 PSVTVDCVIFGFDDGELKVLLIKRKNEPFKGGWALPGGFVR--EDETLEDAARRELREETGLKDIYLEQLGTFGDPDRDP 78
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446077453 101 RGWAVTILYFALIDFNAYQHQA--LAEYSEWVPVAKAQDlALAFDHNELLSLALE 153
Cdd:cd18873   79 RGRVISVAYLALVPEEDLAPKAgdDAAEARWFPVDELLP-PLAFDHAEIIADALE 132
NUDIX pfam00293
NUDIX domain;
32-148 1.81e-10

NUDIX domain;


Pssm-ID: 395229 [Multi-domain]  Cd Length: 132  Bit Score: 57.11  E-value: 1.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453   32 VFNGQLQVLLIKRPNFPAKDQWALPGGFADltHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDPRGWAVT--ILY 109
Cdd:pfam00293  10 LLNEKGRVLLVRRSKKPFPGWWSLPGGKVE--PGETPEEAARRELEEETGLEPELLELLGSLHYLAPFDGRFPDEheILY 87
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446077453  110 FALIDFNA-YQHQALAEYSE--WVPVAKAQDLALAFDHNELL 148
Cdd:pfam00293  88 VFLAEVEGeLEPDPDGEVEEvrWVPLEELLLLKLAPGDRKLL 129
PRK05379 PRK05379
bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase;
3-154 7.32e-09

bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase;


Pssm-ID: 235436 [Multi-domain]  Cd Length: 340  Bit Score: 55.40  E-value: 7.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453   3 IQTEQEFLASYDRRDYDAPL----LTVDMAIfsVFNGQlqVLLIKRPNFPAKDQWALPGGFadLTHDQDLMATAYRKLVE 78
Cdd:PRK05379 180 LVAEADFIEQYRKAWAAAPYpptfVTVDAVV--VQSGH--VLLVRRRAEPGKGLWALPGGF--LEQDETLLDACLRELRE 253
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  79 KTGISSPY-LEQVASVGNA-----KRDPRGwaVTILYFALIDFNAYQHQAL-----AEYSEWVPVAKAQDLALAF--DHN 145
Cdd:PRK05379 254 ETGLKLPEpVLRGSIRDQQvfdhpGRSLRG--RTITHAFLFEFPAGELPRVkggddADKARWVPLAELLAMRDRMfeDHF 331

                 ....*....
gi 446077453 146 ELLSLALER 154
Cdd:PRK05379 332 QIITHFLGR 340
NUDIX_GDPMH_NudD cd03430
GDP-mannose glycosyl hydrolase; GDP-mannose glycosyl hydrolase, also known as GDP-mannose ...
20-58 3.59e-04

GDP-mannose glycosyl hydrolase; GDP-mannose glycosyl hydrolase, also known as GDP-mannose mannosyl hydrolase/GDPMH, is a member of the NUDIX hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified NUDIX signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus closely related to the regulation of cell wall biosynthesis. Enzymes in this family are believed to regulate the concentration of GDP-mannose and GDP-glucose in the bacterial cell wall.


Pssm-ID: 467536 [Multi-domain]  Cd Length: 146  Bit Score: 39.92  E-value: 3.59e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 446077453  20 APLLTVDMAIFsvfNGQLQVLLIKRPNFPAKDQWALPGG 58
Cdd:cd03430   13 TPLVSIDLIIR---NEDGEILLGKRNNRPAQGYWFVPGG 48
 
Name Accession Description Interval E-value
COG4111 COG4111
Uncharacterized conserved protein [Function unknown];
54-224 1.58e-58

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443287 [Multi-domain]  Cd Length: 170  Bit Score: 183.45  E-value: 1.58e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  54 ALPGGFadLTHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDPRGWAVTILYFALIDFNAyQHQALAEYSEWVPVA 133
Cdd:COG4111    1 ALPGGF--VREHESLEDAARRWLAEQTGLELGYLEQLYTFGDPDRDPRGRVISVAYLALVREEE-LRADDADDAAWFPVD 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453 134 KAQdlALAFDHNELLSLALERLTNKTRYTALPASLMPELFTLTELQTIYEIILGQSLDKKAFRRRMIEAGAVEETSH-SK 212
Cdd:COG4111   78 ELP--PLAFDHRRILATALERLRAKLEYTPIGFELLPEKFTLSELQRLYEAILGRKLDKRNFRRKILSLGLLEETGEkQT 155
                        170
                 ....*....|..
gi 446077453 213 IVGKRPAQLYRY 224
Cdd:COG4111  156 GGAGRPAKLYRF 167
NUDIX_NadM_like cd18873
bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase and similar proteins; ...
21-153 4.00e-50

bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase and similar proteins; Bacterial NadM-Nudix is a bifunctional enzyme containing a nicotinamide mononucleotide (NMN) adenylyltransferase (NMNAT) and an ADP-ribose pyrophosphatase (ADPRase) domain. NMNAT was initially identified as an NAD+ synthase that catalyzes the reversible conversion of NMN to NAD+ in the final step of both the de novo biosynthesis and salvage pathways in most organisms across all three kingdoms of life ADPRase is a member of the NUDIX family proteins, catalyzes the metal-induced and concerted general acid-base hydrolysis of ADP ribose (ADPR) into AMP and ribose-5'-phosphate (R5P). Additional members in this cd include bacterial transcriptional regulator, NrtR, which represses the transcription of NAD biosynthetic genes in vitro and adenosine diphosphate ribose (ADPR), as well as NadQ, a NUDIX-like ATP-responsive regulator of NAD biosynthesis. Members of the NUDIX hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance _ "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.


Pssm-ID: 467585 [Multi-domain]  Cd Length: 132  Bit Score: 160.79  E-value: 4.00e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  21 PLLTVDMAIFSVFNGQLQVLLIKRPNFPAKDQWALPGGFADltHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDP 100
Cdd:cd18873    1 PSVTVDCVIFGFDDGELKVLLIKRKNEPFKGGWALPGGFVR--EDETLEDAARRELREETGLKDIYLEQLGTFGDPDRDP 78
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446077453 101 RGWAVTILYFALIDFNAYQHQA--LAEYSEWVPVAKAQDlALAFDHNELLSLALE 153
Cdd:cd18873   79 RGRVISVAYLALVPEEDLAPKAgdDAAEARWFPVDELLP-PLAFDHAEIIADALE 132
YjhB COG1051
ADP-ribose pyrophosphatase YjhB, NUDIX family [Nucleotide transport and metabolism];
19-148 2.03e-17

ADP-ribose pyrophosphatase YjhB, NUDIX family [Nucleotide transport and metabolism];


Pssm-ID: 440671 [Multi-domain]  Cd Length: 125  Bit Score: 75.79  E-value: 2.03e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  19 DAPLLTVDMAIFsvfNGQLQVLLIKRPNFPAKDQWALPGGFADltHDQDLMATAYRKLVEKTGISSPYLEQVASVGNakr 98
Cdd:COG1051    3 KVPKVAVDAVIF---RKDGRVLLVRRADEPGKGLWALPGGKVE--PGETPEEAALRELREETGLEVEVLELLGVFDH--- 74
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 446077453  99 DPRGWAVTILYFALIDFNAYQHQALAEYSEWVPVAKAQDLALAFDHNELL 148
Cdd:COG1051   75 PDRGHVVSVAFLAEVLSGEPRADDEIDEARWFPLDELPELAFTPADHEIL 124
NUDIX_Hydrolase cd02883
NUDIX hydrolase superfamily; NUDIX hydrolase is a superfamily of enzymes found in all three ...
32-131 1.73e-11

NUDIX hydrolase superfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467528 [Multi-domain]  Cd Length: 106  Bit Score: 59.34  E-value: 1.73e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  32 VFNGQLQVLLIKRPNFPAKDQWALPGGFADltHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDPRGWAVTILYFA 111
Cdd:cd02883    7 VFDDEGRVLLVRRSDGPGPGGWELPGGGVE--PGETPEEAAVREVREETGLDVEVLRLLGVYEFPDPDEGRHVVVLVFLA 84
                         90       100
                 ....*....|....*....|..
gi 446077453 112 LIDFNAYQHQALAEYSE--WVP 131
Cdd:cd02883   85 RVVGGEPPPLDDEEISEvrWVP 106
NUDIX pfam00293
NUDIX domain;
32-148 1.81e-10

NUDIX domain;


Pssm-ID: 395229 [Multi-domain]  Cd Length: 132  Bit Score: 57.11  E-value: 1.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453   32 VFNGQLQVLLIKRPNFPAKDQWALPGGFADltHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDPRGWAVT--ILY 109
Cdd:pfam00293  10 LLNEKGRVLLVRRSKKPFPGWWSLPGGKVE--PGETPEEAARRELEEETGLEPELLELLGSLHYLAPFDGRFPDEheILY 87
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446077453  110 FALIDFNA-YQHQALAEYSE--WVPVAKAQDLALAFDHNELL 148
Cdd:pfam00293  88 VFLAEVEGeLEPDPDGEVEEvrWVPLEELLLLKLAPGDRKLL 129
PRK05379 PRK05379
bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase;
3-154 7.32e-09

bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase;


Pssm-ID: 235436 [Multi-domain]  Cd Length: 340  Bit Score: 55.40  E-value: 7.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453   3 IQTEQEFLASYDRRDYDAPL----LTVDMAIfsVFNGQlqVLLIKRPNFPAKDQWALPGGFadLTHDQDLMATAYRKLVE 78
Cdd:PRK05379 180 LVAEADFIEQYRKAWAAAPYpptfVTVDAVV--VQSGH--VLLVRRRAEPGKGLWALPGGF--LEQDETLLDACLRELRE 253
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  79 KTGISSPY-LEQVASVGNA-----KRDPRGwaVTILYFALIDFNAYQHQAL-----AEYSEWVPVAKAQDLALAF--DHN 145
Cdd:PRK05379 254 ETGLKLPEpVLRGSIRDQQvfdhpGRSLRG--RTITHAFLFEFPAGELPRVkggddADKARWVPLAELLAMRDRMfeDHF 331

                 ....*....
gi 446077453 146 ELLSLALER 154
Cdd:PRK05379 332 QIITHFLGR 340
NUDIX_ADPRase cd04673
ADP-ribose pyrophosphatase; ADP-ribose pyrophosphatase (ADPRase; EC 3.6.1.13) catalyzes the ...
32-152 4.74e-07

ADP-ribose pyrophosphatase; ADP-ribose pyrophosphatase (ADPRase; EC 3.6.1.13) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the NUDIX hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the NUDIX motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.


Pssm-ID: 467557 [Multi-domain]  Cd Length: 128  Bit Score: 47.51  E-value: 4.74e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  32 VFNGQlQVLLIKRPNFPAKDQWALPGGfaDLTHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDPRGwavTILY-F 110
Cdd:cd04673    8 VFRDG-RVLLVRRGNPPDAGLWSFPGG--KVELGETLEDAALRELREETGLEAEVVGLLTVVDVIERDEAG---RVRFhY 81
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 446077453 111 ALIDFnayqhqaLAEYSEWVPVAKaqDLALA---FDHNELLSLAL 152
Cdd:cd04673   82 VILDF-------LAEWVSGEPVAG--DDALDarwFSLEELDGLPL 117
AraR_C pfam19368
AraR C-terminal winged HTH domain; This entry represents the C-terminal DNA-binding domain of ...
161-229 4.80e-07

AraR C-terminal winged HTH domain; This entry represents the C-terminal DNA-binding domain of AraR proteins which are involved in regulating Arabinose utilization. This domain has a winged helix-turn-helix structure.


Pssm-ID: 437200  Cd Length: 82  Bit Score: 46.28  E-value: 4.80e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446077453  161 YTALPASLMPELFTLTELQTIYEIILGQSL-DKKAFRRRMIEAGAVEETSHSKIVGK-RPAQLYRYALDSF 229
Cdd:pfam19368   1 YSPIAFDVLPELFTLNDLYQFYTTVLGENFsDYSNFRTRLLKLGFLSDTGKKVSRGAgRPASLYRFDAEAF 71
NUDIX_GDPMH_NudD cd03430
GDP-mannose glycosyl hydrolase; GDP-mannose glycosyl hydrolase, also known as GDP-mannose ...
20-58 3.59e-04

GDP-mannose glycosyl hydrolase; GDP-mannose glycosyl hydrolase, also known as GDP-mannose mannosyl hydrolase/GDPMH, is a member of the NUDIX hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified NUDIX signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus closely related to the regulation of cell wall biosynthesis. Enzymes in this family are believed to regulate the concentration of GDP-mannose and GDP-glucose in the bacterial cell wall.


Pssm-ID: 467536 [Multi-domain]  Cd Length: 146  Bit Score: 39.92  E-value: 3.59e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 446077453  20 APLLTVDMAIFsvfNGQLQVLLIKRPNFPAKDQWALPGG 58
Cdd:cd03430   13 TPLVSIDLIIR---NEDGEILLGKRNNRPAQGYWFVPGG 48
NUDIX_Nudt17 cd04694
nucleoside diphosphate-linked moiety X)) motif 17; Nucleoside diphosphate-linked moiety X)) ...
38-82 4.57e-04

nucleoside diphosphate-linked moiety X)) motif 17; Nucleoside diphosphate-linked moiety X)) motif 17 (EC 3.6.1.-) encoded by the NUDT17 gene on chromosome 1q21.1 and encodes an enzyme thought to hydrolyse some nucleoside diphosphate derivatives. Members of the NUDIX hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of NUDIX hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance _ "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.


Pssm-ID: 467576 [Multi-domain]  Cd Length: 135  Bit Score: 39.20  E-value: 4.57e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446077453  38 QVLLIKRPN----FPakDQWALPGGFADLthDQDLMATAYRKLVEKTGI 82
Cdd:cd04694   15 RVLLTRRAKhmrtFP--GVWVPPGGHVEL--GESLLEAGLRELQEETGL 59
NUDIX_Hydrolase cd04681
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
38-95 4.61e-04

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467564 [Multi-domain]  Cd Length: 135  Bit Score: 39.09  E-value: 4.61e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 446077453  38 QVLLIKRPNFPAKDQWALPGGFADltHDQDLMATAYRKLVEKTGISSPYLEQVASVGN 95
Cdd:cd04681   18 EILFVRRAKEPGKGKLDLPGGFVD--PGESAEEALRRELREELGLKIPKLRYLCSLPN 73
NUDIX_Hydrolase cd18877
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
53-140 5.20e-04

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467589 [Multi-domain]  Cd Length: 141  Bit Score: 39.26  E-value: 5.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  53 WALPGGFADltHDQDLMATAYRKLVEKTGISspyLEQVASVGNAKRDPRGWA-VTILYFA--LIDFNAYQHQALAeySEW 129
Cdd:cd18877   49 WALPGGARD--SGETPEAAALRETEEETGLD---ADTLRVVGTHVDDHGGWSyTTVLASApePLPVRPANEESVE--LRW 121
                         90
                 ....*....|.
gi 446077453 130 VPVAKAQDLAL 140
Cdd:cd18877  122 VPLDEVESLPL 132
NUDIX_CoAse_Nudt7 cd03426
coenzyme A pyrophosphatase and similar proteins; Coenzyme A pyrophosphatase (CoAse; EC 3.6.1.1) ...
34-83 5.39e-04

coenzyme A pyrophosphatase and similar proteins; Coenzyme A pyrophosphatase (CoAse; EC 3.6.1.1), also called nucleoside diphosphate-linked moiety X)) motif 7, is a member of the NUDIX hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved NUDIX fold and requires a single divalent cation for catalysis. In addition to a signature NUDIX motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.


Pssm-ID: 467532 [Multi-domain]  Cd Length: 158  Bit Score: 39.40  E-value: 5.39e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446077453  34 NGQLQVLLIKRPNFPAK--DQWALPGGFADLThDQDLMATAYRKLVEKTGIS 83
Cdd:cd03426   13 DGELHVLLTKRASHLRShpGQIAFPGGKREPG-DESPVETALRETEEEIGLP 63
NUDIX_Hydrolase cd04674
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
23-82 8.03e-04

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467558 [Multi-domain]  Cd Length: 118  Bit Score: 38.21  E-value: 8.03e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  23 LTVDMAIFSVFNGqlqVLLIKRPNFPAKDQWALPGGFADLthDQDLMATAYRKLVEKTGI 82
Cdd:cd04674    4 LPVVVALLPVRDG---LLVIRRGIEPGHGELALPGGYIEY--GETWQEAAVRELREETGV 58
NUDIX_Hydrolase cd03674
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
32-140 8.96e-04

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467542 [Multi-domain]  Cd Length: 130  Bit Score: 38.39  E-value: 8.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  32 VFNGQL-QVLLIKRPNFpakDQWALPGGFADltHDQDLMATAYRKLVEKTGIS---------SPYLEQVASVGNAKRDPR 101
Cdd:cd03674    8 VVNPDRgKVLLVHHRKL---GRWLQPGGHVE--PDEDPLEAALREAREETGLDvellsplspDPLDIDVHPIPANPGEPA 82
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 446077453 102 GWAVTILYFALIDFNAYQHQaLAEYSE--WVPVAKAQDLAL 140
Cdd:cd03674   83 HLHLDVRYLAVADGDEALRK-SDESSDvrWFPLDELEELSM 122
NUDIX_Ap4A_Nudt2 cd03428
diadenosine tetraphosphate; Diadenosine tetraphosphate (Ap4A; EC 3.6.1.17), also called NUDIX ...
29-83 1.02e-03

diadenosine tetraphosphate; Diadenosine tetraphosphate (Ap4A; EC 3.6.1.17), also called NUDIX (nucleoside diphosphate-linked moiety X)) motif 2/Nudt2, is a member of the NUDIX hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature NUDIX motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the NUDIX hydrolase superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies.


Pssm-ID: 467534 [Multi-domain]  Cd Length: 132  Bit Score: 38.30  E-value: 1.02e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446077453  29 IFSVFNGQLQVLLIKRPNFpakDQWALPGGFADltHDQDLMATAYRKLVEKTGIS 83
Cdd:cd03428    9 IYRRDNGEIEFLLLQHSYG---GHWDFPKGHVE--PGESELETALRETKEETGLT 58
NUDIX_Ap4A_hydrolase_plant_like cd03671
plant diadenosine tetraphosphate (Ap4A) hydrolase and similar proteins; Diadenosine ...
32-142 1.10e-03

plant diadenosine tetraphosphate (Ap4A) hydrolase and similar proteins; Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the NUDIX hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature NUDIX motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the NUDIX hydrolase superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies.


Pssm-ID: 467539 [Multi-domain]  Cd Length: 147  Bit Score: 38.32  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  32 VFNGQLQVLLIKRPNFPakDQWALP-GGFADlthDQDLMATAYRKLVEKTGISSPYLEQVASVGN-------AKRDPRGW 103
Cdd:cd03671   10 LFNRDGQVLVGRRIDVP--GAWQFPqGGIDE---GEDPEEAALRELYEETGLSPEDVEIIAETPDwltydlpEDLIRKGW 84
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446077453 104 AV-----TILYFAL--------IDFNAYQHQALAEYsEWVPVAKAQDLALAF 142
Cdd:cd03671   85 GGkyrgqKQKWFLFrftgddseINLDTHEHPEFDAW-RWVDLEELPDLVVPF 135
NUDIX_CDP-Chase cd18890
CDP-choline pyrophosphatase; CDP-choline pyrophosphatase catalyzes the hydrolysis of ...
32-156 1.28e-03

CDP-choline pyrophosphatase; CDP-choline pyrophosphatase catalyzes the hydrolysis of CDP-choline to produce CMP and phosphocholine. Members of the NUDIX hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of NUDIX hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance _ "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.


Pssm-ID: 467600 [Multi-domain]  Cd Length: 129  Bit Score: 37.79  E-value: 1.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  32 VFNGQLQVLLIKRPnfpAKDQWALPGGFADLTHDQDLMATayRKLVEKTGISSPYLEQVASVGNAKRD--PRGWAVTILY 109
Cdd:cd18890    9 VFNDKEEILLVKEK---EDGKWTLPGGWADVGYTPTEVAA--KEVEEETGLEVSPKKLLAILDKRKHPhpPQPTYVYKLF 83
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 446077453 110 FaLIDFNAYQHQALAEYSEwvpvakaqdlALAFDHNELLSLALERLT 156
Cdd:cd18890   84 I-LCEIEGGELKPSFETGE----------VRFFSENELPELSTDRVT 119
NUDIX_MTH2_Nudt15 cd04678
MutT homolog 2; MutT Homolog 2 (MTH2; EC 3.6.1.9), also known as NUDIX (nucleoside ...
32-107 2.01e-03

MutT homolog 2; MutT Homolog 2 (MTH2; EC 3.6.1.9), also known as NUDIX (nucleoside diphosphate-linked moiety X)) motif 15/Nudt15, may catalyze the hydrolysis of nucleoside diphosphates, triphosphates including dGTP, dTTP, dCTP, their oxidized forms like 8-oxo-dGTP, and prodrug thiopurine derivatives 6-thio-dGTP and 6-thio-GTP. MTH2 may also play a role in DNA synthesis and cell cycle progression by stabilizing PCNA. Members of the NUDIX hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of NUDIX hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance _ "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.


Pssm-ID: 467561 [Multi-domain]  Cd Length: 128  Bit Score: 37.16  E-value: 2.01e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446077453  32 VFNGQLQVLLIKRPNFPAKDQWALPGGFadLTHDQDLMATAYRKLVEKTGISSPYLEQVASVGNAKRDPRGWAVTI 107
Cdd:cd04678    9 VLNDDGKVLLGRRKGSHGAGTWALPGGH--LEFGESFEECAAREVLEETGLEIRNVRFLTVTNDVFEEEGKHYVTI 82
NUDIX_Hydrolase cd04677
uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found ...
21-82 2.46e-03

uncharacterized NUDIX hydrolase subfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467560 [Multi-domain]  Cd Length: 137  Bit Score: 37.11  E-value: 2.46e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446077453  21 PLLTVDMAIFsVFNGQLQVLLIKRPNfpaKDQWALPGGFADLthDQDLMATAYRKLVEKTGI 82
Cdd:cd04677    9 PLILVGAAVI-ILNEQGRILLQKRTD---TGDWGLPGGAMEL--GESLEETARREVFEETGL 64
NUDIX_ASFGF2_Nudt6 cd04670
Antisense Basic Fibroblast Growth Factor; Antisense Basic Fibroblast Growth Factor (ASFGF2; EC ...
32-152 3.88e-03

Antisense Basic Fibroblast Growth Factor; Antisense Basic Fibroblast Growth Factor (ASFGF2; EC 3.6.1.-), also known as nucleoside diphosphate-linked moiety X)) motif 6/Nudt6, and similar proteins including peroxisomal coenzyme A diphosphatase/Nudt7 and mitochondrial coenzyme A diphosphatase/Nudt8. The Nudt6 gene overlaps and lies on the opposite strand from FGF2 gene, and is thought to be the FGF2 antisense gene. The two genes are independently transcribed, and their expression shows an inverse relationship, suggesting that this antisense transcript may regulate FGF2 expression. This gene has also been shown to have hormone-regulatory and antiproliferative actions in the pituitary that are independent of FGF2 expression. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. Members of the NUDIX hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of NUDIX hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance _ "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.


Pssm-ID: 467554 [Multi-domain]  Cd Length: 131  Bit Score: 36.36  E-value: 3.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446077453  32 VFNGQLQVLLIKRPNFPaKDQWALPGGFADLTHdqDLMATAYRKLVEKTGISSpylEQVASVGNAKRDPRGWAVTILYFA 111
Cdd:cd04670    9 VINENNEVLVVQEKYGG-PGGWKLPGGLVDPGE--DIGEAAVREVFEETGIDT---EFVSILGFRHQHPGRFGKSDLYFV 82
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 446077453 112 ----LIDFNAYQHQA--LAEYsEWVPVAKAQDLALAFDHNELLSLAL 152
Cdd:cd04670   83 crlrPLSDEEIKICPeeIAEA-KWMPLEEYLKQPNVSQINKLVAKLL 128
NUDIX_ADPRase cd04691
ADP-ribose pyrophosphatase and similar proteins; ADP-ribose pyrophosphatase (ADPRase; EC 3.6.1. ...
38-84 4.68e-03

ADP-ribose pyrophosphatase and similar proteins; ADP-ribose pyrophosphatase (ADPRase; EC 3.6.1.13) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the NUDIX hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the NUDIX motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.


Pssm-ID: 467573 [Multi-domain]  Cd Length: 122  Bit Score: 36.12  E-value: 4.68e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 446077453  38 QVLLIKRPNFPAKDQWALPGGFADltHDQDLMATAYRKLVEKTGISS 84
Cdd:cd04691   13 KVLLVKRAYGPGKGRWTLPGGFVE--EGETLDEAIVREVLEETGIDA 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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