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Conserved domains on  [gi|446081895|ref|WP_000159750|]
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MULTISPECIES: PTS transporter subunit EIIC [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
murP super family cl30319
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
5-472 8.56e-97

PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed


The actual alignment was detected with superfamily member PRK09586:

Pssm-ID: 181971 [Multi-domain]  Cd Length: 476  Bit Score: 300.06  E-value: 8.56e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895   5 QQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIH-DERIQVVVGPGTVNKVANHMAELsgv 83
Cdd:PRK09586   6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILsDDQVQVVLGPGKAQRAAKAMNEL--- 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  84 kLGDPIPHHHNdsekmdyksyAADKAKANKEAHKAKQKNGkLNKVLKSIANIFIPLIPAFIGAGLIGGIAAVLSNLMVAG 163
Cdd:PRK09586  83 -LGEAAAPVQD----------LAEIAAQNKRQLKAKQTSG-VQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVP 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 164 YISGAWITQLITVFNVIKDGMLAYLAIFTGINAAKEFGATpGLGGVIGGTTLLTGI---AGKNIL--MNVFTGEPLQPgQ 238
Cdd:PRK09586 151 ADAQGTLPDALNYMKVFSKGLFTFLSILIGYNAQQAFGGT-GVNGAIIASLFLLGYnpaATTGYYagFHDFFGLPIDP-R 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 239 GGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVGLLTIFIFMPLAGFVSDS---LVSVVNGiisigGVFSGF 315
Cdd:PRK09586 229 GNIIGVLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGmswLFMHLNS-----NPFGCA 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 316 IIGASFLPLVMLGLHHIFTPIHIEMINQSGATYLLPIAAMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFLGIGEP 395
Cdd:PRK09586 304 VLAGLFLIAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEP 383
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 396 LIYGVTLPLGRPFLTACIGGGIGGAVIGGIG-----HIGAKAIGPSGVSLLPLISDN--MYLG---YIAGLLAAYAGGFV 465
Cdd:PRK09586 384 LIYGVTLPRMKPFVTACLGGAAGGFFIGLIAwlglpVGLNSVFGPSGLVALPLMTSAqgILPGmavYAGGLLVAYVCGFI 463

                 ....*..
gi 446081895 466 CTYLFGT 472
Cdd:PRK09586 464 FTTLFGC 470
 
Name Accession Description Interval E-value
murP PRK09586
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
5-472 8.56e-97

PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed


Pssm-ID: 181971 [Multi-domain]  Cd Length: 476  Bit Score: 300.06  E-value: 8.56e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895   5 QQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIH-DERIQVVVGPGTVNKVANHMAELsgv 83
Cdd:PRK09586   6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILsDDQVQVVLGPGKAQRAAKAMNEL--- 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  84 kLGDPIPHHHNdsekmdyksyAADKAKANKEAHKAKQKNGkLNKVLKSIANIFIPLIPAFIGAGLIGGIAAVLSNLMVAG 163
Cdd:PRK09586  83 -LGEAAAPVQD----------LAEIAAQNKRQLKAKQTSG-VQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVP 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 164 YISGAWITQLITVFNVIKDGMLAYLAIFTGINAAKEFGATpGLGGVIGGTTLLTGI---AGKNIL--MNVFTGEPLQPgQ 238
Cdd:PRK09586 151 ADAQGTLPDALNYMKVFSKGLFTFLSILIGYNAQQAFGGT-GVNGAIIASLFLLGYnpaATTGYYagFHDFFGLPIDP-R 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 239 GGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVGLLTIFIFMPLAGFVSDS---LVSVVNGiisigGVFSGF 315
Cdd:PRK09586 229 GNIIGVLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGmswLFMHLNS-----NPFGCA 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 316 IIGASFLPLVMLGLHHIFTPIHIEMINQSGATYLLPIAAMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFLGIGEP 395
Cdd:PRK09586 304 VLAGLFLIAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEP 383
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 396 LIYGVTLPLGRPFLTACIGGGIGGAVIGGIG-----HIGAKAIGPSGVSLLPLISDN--MYLG---YIAGLLAAYAGGFV 465
Cdd:PRK09586 384 LIYGVTLPRMKPFVTACLGGAAGGFFIGLIAwlglpVGLNSVFGPSGLVALPLMTSAqgILPGmavYAGGLLVAYVCGFI 463

                 ....*..
gi 446081895 466 CTYLFGT 472
Cdd:PRK09586 464 FTTLFGC 470
PtsG1 COG1263
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ...
118-471 1.30e-83

Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];


Pssm-ID: 440875 [Multi-domain]  Cd Length: 463  Bit Score: 265.65  E-value: 1.30e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 118 AKQKNGKLNKVLKSIANIFIPLIPAFIGAGLIGGIAAVLSNLMVAGyiSGAWITQLITVFNVIKDGMLAYLAIFTGINAA 197
Cdd:COG1263    1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLG--EGSFLSGTYQILNAAGDAVFYFLPLLFAIGAA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 198 KEFGATPGLGGVIGG----TTLLTGIAGKNILMNVFTGEPLQPGQGGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPT 273
Cdd:COG1263   79 KGFGGNPALAAVIGYllvhPTLLNAYAVAGGYISFLGIPTLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPI 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 274 IALLIVGLLTIFIFMPLAGFVSDSLVSVVNGIISIGGVFSGFIIGASFLPLVMLGLHHIFTPIHIEMINQSGATYLLPIA 353
Cdd:COG1263  159 LTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPIL 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 354 AMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFL-GIGEPLIYGVTLPLGRPFLTACiGGGIGGAVIGGIGHIGAKA 432
Cdd:COG1263  239 AAAMFGQPGAALAVYLKAKPNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHA-IGGGLGGAIAGLLGVKAFS 317
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 446081895 433 IGPSGVSLLPLI---SDNMYLGYIAGLLAAYAGGFVCTYLFG 471
Cdd:COG1263  318 FGVGGLIDFPSIlnpGATNLLLYLIGLVIAFVYYFVFTFLIG 359
PTS_EIIC pfam02378
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ...
134-409 5.04e-29

Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.


Pssm-ID: 367061  Cd Length: 315  Bit Score: 116.29  E-value: 5.04e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  134 NIFIPLIPAFIGAGLIGGIAAVLSNLMVAGYISGAWITQLITVFNVIKDGMLAYLAIFTGINAAKEFGATPGLGGVIGGT 213
Cdd:pfam02378   2 DGFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAAGLI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  214 TLLT-----------GIAGKNILMNVFTGEPLQPG-QGGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVGL 281
Cdd:pfam02378  82 GLLSfnlaaaisvalTAAGLSGGGNILGIGLGATGvFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGF 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  282 LTIFIFMPLAGFVSDSLVSVVNG----IISIGGVFSGFIIGASFLPLVMLGLHHIFTPIHIEMIN------------QSG 345
Cdd:pfam02378 162 VTLLVIGPVLGLIWPAIQGGLNAlgllLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIggsnpianqqayGAG 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446081895  346 ATYLLP---IAAMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFLGIGEPLIYGVTLPLGRPFL 409
Cdd:pfam02378 242 AAHILTggfDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFF 308
pts-Glc TIGR00852
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ...
182-412 1.11e-28

PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273299  Cd Length: 289  Bit Score: 114.72  E-value: 1.11e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  182 DGMLAYLAIFTGINAAKEFGATPGLGGVIGGT----TLLTGIAGKNILMNVFTGEPLQP--GQGGIIGVIFAVWILSIVE 255
Cdd:TIGR00852   2 SAAFFFLPLLFAIGAAKGFGGNPYLGAALAGIlvhpVLNNAMGVGAQAVGNFFGFEIAKvgYTGVVGPIIVGAIALALHE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  256 KRLHKIVPNAIDIIVTPTIALLIVGLLTIFIFMPLAGFVSDSLV-SVVNGIISIGGVFSGFIIGASFLPLVMLGLHHIFT 334
Cdd:TIGR00852  82 RFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGIsALLHWLYSAGGALGGAIFGFLYRLLVPTGLHHIFY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  335 PIHIEMI---NQSGATYLLPIAAMAGAGQVGAALALWVrCKRNTTLRNTLKGALPVGFLGIGEPLIYGVTLPLGRPFLTA 411
Cdd:TIGR00852 162 AIFIQLIaggTVIGGGQVIPGDALANMAQGGAALAVFF-TAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFVAG 240

                  .
gi 446081895  412 C 412
Cdd:TIGR00852 241 L 241
PTS_IIB_glc cd00212
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ...
5-80 2.49e-24

PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation


Pssm-ID: 238130 [Multi-domain]  Cd Length: 78  Bit Score: 96.06  E-value: 2.49e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446081895   5 QQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVI-HDERIQVVVGPGTVNKVANHMAEL 80
Cdd:cd00212    1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVkNGGQYQVIIGPGVADVYKEAIKLL 77
 
Name Accession Description Interval E-value
murP PRK09586
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
5-472 8.56e-97

PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed


Pssm-ID: 181971 [Multi-domain]  Cd Length: 476  Bit Score: 300.06  E-value: 8.56e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895   5 QQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIH-DERIQVVVGPGTVNKVANHMAELsgv 83
Cdd:PRK09586   6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILsDDQVQVVLGPGKAQRAAKAMNEL--- 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  84 kLGDPIPHHHNdsekmdyksyAADKAKANKEAHKAKQKNGkLNKVLKSIANIFIPLIPAFIGAGLIGGIAAVLSNLMVAG 163
Cdd:PRK09586  83 -LGEAAAPVQD----------LAEIAAQNKRQLKAKQTSG-VQQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQVMHVP 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 164 YISGAWITQLITVFNVIKDGMLAYLAIFTGINAAKEFGATpGLGGVIGGTTLLTGI---AGKNIL--MNVFTGEPLQPgQ 238
Cdd:PRK09586 151 ADAQGTLPDALNYMKVFSKGLFTFLSILIGYNAQQAFGGT-GVNGAIIASLFLLGYnpaATTGYYagFHDFFGLPIDP-R 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 239 GGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVGLLTIFIFMPLAGFVSDS---LVSVVNGiisigGVFSGF 315
Cdd:PRK09586 229 GNIIGVLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGmswLFMHLNS-----NPFGCA 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 316 IIGASFLPLVMLGLHHIFTPIHIEMINQSGATYLLPIAAMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFLGIGEP 395
Cdd:PRK09586 304 VLAGLFLIAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIIPGLLGVGEP 383
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 396 LIYGVTLPLGRPFLTACIGGGIGGAVIGGIG-----HIGAKAIGPSGVSLLPLISDN--MYLG---YIAGLLAAYAGGFV 465
Cdd:PRK09586 384 LIYGVTLPRMKPFVTACLGGAAGGFFIGLIAwlglpVGLNSVFGPSGLVALPLMTSAqgILPGmavYAGGLLVAYVCGFI 463

                 ....*..
gi 446081895 466 CTYLFGT 472
Cdd:PRK09586 464 FTTLFGC 470
PtsG1 COG1263
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ...
118-471 1.30e-83

Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];


Pssm-ID: 440875 [Multi-domain]  Cd Length: 463  Bit Score: 265.65  E-value: 1.30e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 118 AKQKNGKLNKVLKSIANIFIPLIPAFIGAGLIGGIAAVLSNLMVAGyiSGAWITQLITVFNVIKDGMLAYLAIFTGINAA 197
Cdd:COG1263    1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLG--EGSFLSGTYQILNAAGDAVFYFLPLLFAIGAA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 198 KEFGATPGLGGVIGG----TTLLTGIAGKNILMNVFTGEPLQPGQGGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPT 273
Cdd:COG1263   79 KGFGGNPALAAVIGYllvhPTLLNAYAVAGGYISFLGIPTLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPI 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 274 IALLIVGLLTIFIFMPLAGFVSDSLVSVVNGIISIGGVFSGFIIGASFLPLVMLGLHHIFTPIHIEMINQSGATYLLPIA 353
Cdd:COG1263  159 LTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPIL 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 354 AMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFL-GIGEPLIYGVTLPLGRPFLTACiGGGIGGAVIGGIGHIGAKA 432
Cdd:COG1263  239 AAAMFGQPGAALAVYLKAKPNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHA-IGGGLGGAIAGLLGVKAFS 317
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 446081895 433 IGPSGVSLLPLI---SDNMYLGYIAGLLAAYAGGFVCTYLFG 471
Cdd:COG1263  318 FGVGGLIDFPSIlnpGATNLLLYLIGLVIAFVYYFVFTFLIG 359
PRK09824 PRK09824
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
5-478 5.36e-42

PTS system beta-glucoside-specific transporter subunits IIABC; Provisional


Pssm-ID: 236627 [Multi-domain]  Cd Length: 627  Bit Score: 158.34  E-value: 5.36e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895   5 QQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIHDE-RIQVVVGpgtvNKVAN-HMAELSG 82
Cdd:PRK09824   4 TELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGgQFQVVIG----NHVADvFLAVNSV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  83 VKLGDpiphhhndsekmdyksyaadkaKANKEAHKAKQKNgKLNKVLKSIANIFIPLIPAFIGAGLIGGIAAvlsnLMVA 162
Cdd:PRK09824  80 AGLGE----------------------KAQQAPENDKKGN-LLNRFIDVISGIFTPLIGVMAATGILKGMLA----LALT 132
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 163 GyisgAWITQLITVFNVI---KDGMLAYLAIFTGINAAKEFGATPGLGGVIGGT----TLLTGI-AGKNI--LMNVFTGE 232
Cdd:PRK09824 133 F----GWTTEQSGTYKILfaaSDALFFFFPIILGYTAGKKFGGNPFTAMVIGGAlvhpLMIAAFeAGQKAdaLGLDFLGI 208
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 233 PLQ--PGQGGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVGLLTIFIFMPLAGFVSDSLVSVVNGIISIGG 310
Cdd:PRK09824 209 PVTllNYSSSVIPIIFSAWLCSILERRLNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVP 288
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 311 VFSGFIIGASFLPLVMLGLHHIFTPIHIEMINQSGATYLLPIAAMAGAGQVGAALALWVRcKRNTTLRNTLKGALPVGFL 390
Cdd:PRK09824 289 AFAGAVMGAFWQVFVIFGLHWGLVPLMINNLTVLGHDTMLPLLMPAVMAQVGAALGVFLC-TRDAQKKVVAGSAFLAGLF 367
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 391 GIGEPLIYGVTLPLGRPFLTACIGGGIGGAVIGGIGHIG-----------AKAIGPSGVsllplisDNMYLGYIAGLLAA 459
Cdd:PRK09824 368 GITEPAVYGVNLPLKRPFIFGCISGALGAAIIGYAQTKVysfglpsiftfMQTIPPTGI-------DFTVWASVIGTVIA 440
                        490
                 ....*....|....*....
gi 446081895 460 YAGGFVCTYLFGTTKAMRQ 478
Cdd:PRK09824 441 IGCAFVGTVMFGFPTAKRQ 459
PRK09796 PRK09796
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
7-409 1.62e-34

PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional


Pssm-ID: 182081  Cd Length: 472  Bit Score: 134.92  E-value: 1.62e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895   7 LAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIH-DERIQVVVGpgtvNKVANHMAELSGVKL 85
Cdd:PRK09796   8 LARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRsDNQCQVIIG----NTVSQAFQEVVSLLP 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  86 GDPIPHHHNDSEKMDYKSYAAdkakankeahkakqkngklnKVLKSIANIFIPLIPAFIGAGLIGGIAAVLSnlMVAGYI 165
Cdd:PRK09796  84 GDMQPAQPVGKPKLTLRRIGA--------------------GILDALIGTMSPLIPAIIGGSMVKLLAMILE--MSGVLT 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 166 SGAwitQLITVFNVIKDGMLAYLAIFTGINAAKEFGATPGLGGVIGGttLLTGIAGKNILMNVFTGEPLQ----PGQG-- 239
Cdd:PRK09796 142 KGS---PTLTILNVIGDGAFFFLPLMVAASAAIKFKTNMSLAIAIAG--VLVHPSFIELMAKAAQGEHVEfaliPVTAvk 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 240 ---GIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVGLLTIFIFMPLAGFVSDSLVSVVNGIISIGGVFSGFI 316
Cdd:PRK09796 217 ytyTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAI 296
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 317 IGASFLPLVMLGLHHIFTPIHIEMINQSGAT-YLLPIAAMAGAGQVGAALALWVRCKrNTTLRNT-LKGALPVGFLGIGE 394
Cdd:PRK09796 297 MGALWPLLVMTGMHRVFTPTIIQTIAETGKEgMVMPSEIGANLSLGGSSLAVAWKTK-NPELRQTaLAAAASAIMAGISE 375
                        410
                 ....*....|....*
gi 446081895 395 PLIYGVTLPLGRPFL 409
Cdd:PRK09796 376 PALYGVAIRLKRPLI 390
PRK11007 PRK11007
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
1-411 1.29e-29

PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional


Pssm-ID: 182896  Cd Length: 473  Bit Score: 120.95  E-value: 1.29e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895   1 MTK-EQQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIHDE-RIQVVVGPgTVNKVANHMA 78
Cdd:PRK11007   2 MSKiNQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAgQFQVVIGT-EVGDYYKALI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  79 ELSGVKlgdpiphhhndsekmdyksyAADKakanKEAHKAKQKNGK-LNKVLKSIANIFIPLIPAFIGAGLIGGIAAVLS 157
Cdd:PRK11007  81 ATTGQA--------------------EVDK----EQAKKAARQNMKwHERLISHFAEIFFPLLPALISGGLILGFRNVIG 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 158 NL-MVAG----YISGAWITqLITVFNVIKDGMLAYLAIFTGINAAKEFGATPGLGGVIgGTTLLTgiagkNILMN----- 227
Cdd:PRK11007 137 DIpMSDGqtlaQMYPFWQT-IYDFLWLIGEAIFFYLPVGICWSAVKKMGGTPILGIVL-GVTLVS-----PQLMNayllg 209
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 228 ----------VFTGEPLqpG-QGGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVGLLTIFIFMPLAGFVSD 296
Cdd:PRK11007 210 qqlpevwdfgLFSIEKV--GyQAQVIPALLAGLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGD 287
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 297 SLVSVVNGIIS-----IGGVFSGFIigasFLPLVMLGLHHIFTPIHIEMINQSGATYLLPIAAMAGAGQVGAALALWVRC 371
Cdd:PRK11007 288 GVAFAVKALMTgsfapIGAALFGFL----YAPLVITGVHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIIS 363
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 446081895 372 KRNTTLRNTLKGALPvGFLGIGEPLIYGVTLPLGRPFLTA 411
Cdd:PRK11007 364 RKHNEREISVPAAIS-AYLGVTEPAMYGINLKYRFPMLCA 402
PTS_EIIC pfam02378
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ...
134-409 5.04e-29

Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.


Pssm-ID: 367061  Cd Length: 315  Bit Score: 116.29  E-value: 5.04e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  134 NIFIPLIPAFIGAGLIGGIAAVLSNLMVAGYISGAWITQLITVFNVIKDGMLAYLAIFTGINAAKEFGATPGLGGVIGGT 213
Cdd:pfam02378   2 DGFMPPIPLLIAGGILLGLGNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGVAGAAGLI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  214 TLLT-----------GIAGKNILMNVFTGEPLQPG-QGGIIGVIFAVWILSIVEKRLHKIVPNAIDIIVTPTIALLIVGL 281
Cdd:pfam02378  82 GLLSfnlaaaisvalTAAGLSGGGNILGIGLGATGvFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITGF 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  282 LTIFIFMPLAGFVSDSLVSVVNG----IISIGGVFSGFIIGASFLPLVMLGLHHIFTPIHIEMIN------------QSG 345
Cdd:pfam02378 162 VTLLVIGPVLGLIWPAIQGGLNAlgllLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIggsnpianqqayGAG 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446081895  346 ATYLLP---IAAMAGAGQVGAALALWVRCKRNTTLRNTLKGALPVGFLGIGEPLIYGVTLPLGRPFL 409
Cdd:pfam02378 242 AAHILTggfDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFF 308
pts-Glc TIGR00852
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ...
182-412 1.11e-28

PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273299  Cd Length: 289  Bit Score: 114.72  E-value: 1.11e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  182 DGMLAYLAIFTGINAAKEFGATPGLGGVIGGT----TLLTGIAGKNILMNVFTGEPLQP--GQGGIIGVIFAVWILSIVE 255
Cdd:TIGR00852   2 SAAFFFLPLLFAIGAAKGFGGNPYLGAALAGIlvhpVLNNAMGVGAQAVGNFFGFEIAKvgYTGVVGPIIVGAIALALHE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  256 KRLHKIVPNAIDIIVTPTIALLIVGLLTIFIFMPLAGFVSDSLV-SVVNGIISIGGVFSGFIIGASFLPLVMLGLHHIFT 334
Cdd:TIGR00852  82 RFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGIsALLHWLYSAGGALGGAIFGFLYRLLVPTGLHHIFY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  335 PIHIEMI---NQSGATYLLPIAAMAGAGQVGAALALWVrCKRNTTLRNTLKGALPVGFLGIGEPLIYGVTLPLGRPFLTA 411
Cdd:TIGR00852 162 AIFIQLIaggTVIGGGQVIPGDALANMAQGGAALAVFF-TAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFVAG 240

                  .
gi 446081895  412 C 412
Cdd:TIGR00852 241 L 241
PTS_IIB_glc cd00212
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ...
5-80 2.49e-24

PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation


Pssm-ID: 238130 [Multi-domain]  Cd Length: 78  Bit Score: 96.06  E-value: 2.49e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446081895   5 QQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVI-HDERIQVVVGPGTVNKVANHMAEL 80
Cdd:cd00212    1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVkNGGQYQVIIGPGVADVYKEAIKLL 77
PtsG2 COG1264
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
5-80 8.05e-24

Phosphotransferase system IIB components [Carbohydrate transport and metabolism];


Pssm-ID: 440876 [Multi-domain]  Cd Length: 76  Bit Score: 94.41  E-value: 8.05e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446081895   5 QQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIdGVMGVIH-DERIQVVVGPGtVNKVANHMAEL 80
Cdd:COG1264    1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKnGGQVQVIIGPG-VDKVADEIEKL 75
PTS_EIIB pfam00367
phosphotransferase system, EIIB;
9-40 2.27e-10

phosphotransferase system, EIIB;


Pssm-ID: 459785 [Multi-domain]  Cd Length: 32  Bit Score: 55.45  E-value: 2.27e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 446081895    9 ERIIAAVGGMDNIDSVMNCMTRVRIKVLDENK 40
Cdd:pfam00367   1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
PRK10110 PRK10110
PTS maltose transporter subunit IICB;
8-82 5.88e-10

PTS maltose transporter subunit IICB;


Pssm-ID: 182245 [Multi-domain]  Cd Length: 530  Bit Score: 61.29  E-value: 5.88e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446081895   8 AERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHiDGVMGVIH--DERIQVVVGPgTVNKVANHMAELSG 82
Cdd:PRK10110 452 VPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKD-NRAIGVVQlnQHNLQVVIGP-QVQSVKDEMAGLMH 526
PRK14905 PRK14905
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ...
6-80 8.98e-10

triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional


Pssm-ID: 184898 [Multi-domain]  Cd Length: 355  Bit Score: 60.05  E-value: 8.98e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446081895   6 QLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIH-DERIQVVVGPGTVNKVANHMAEL 80
Cdd:PRK14905 276 EIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSiANQYQIILGAGIVEKIHEEMKAL 351
EIIB_glc TIGR00826
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ...
1-66 8.93e-09

PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273288 [Multi-domain]  Cd Length: 88  Bit Score: 52.36  E-value: 8.93e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446081895    1 MTKEQQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIHDERIQVVVG 66
Cdd:TIGR00826  23 GVKGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNPLQRAVQVISG 88
PRK09702 PRK09702
PTS sugar transporter subunit IIB;
3-66 1.53e-05

PTS sugar transporter subunit IIB;


Pssm-ID: 77355 [Multi-domain]  Cd Length: 161  Bit Score: 45.09  E-value: 1.53e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446081895   3 KEQQLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIHD-ERIQVVVG 66
Cdd:PRK09702  68 KELDQAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSgDAIQVIIG 132
PRK10255 PRK10255
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
6-66 2.41e-05

PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional


Pssm-ID: 182338 [Multi-domain]  Cd Length: 648  Bit Score: 46.79  E-value: 2.41e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446081895   6 QLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIdGVMGVI--HDERIQVVVG 66
Cdd:PRK10255 391 QLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRL-GASGVVklNKQTIQVIVG 452
PRK11089 PRK11089
PTS system glucose-specific transporter subunits IIBC; Provisional
6-71 4.05e-05

PTS system glucose-specific transporter subunits IIBC; Provisional


Pssm-ID: 182955 [Multi-domain]  Cd Length: 477  Bit Score: 45.86  E-value: 4.05e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446081895   6 QLAERIIAAVGGMDNIDSVMNCMTRVRIKVLDENKVDDQELRHIDGVMGVIHDERIQVVVGPGTVN 71
Cdd:PRK11089 400 EMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDN 465
FrwC COG1299
Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and ...
239-397 2.08e-03

Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism];


Pssm-ID: 440910 [Multi-domain]  Cd Length: 469  Bit Score: 40.64  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 239 GGIIGVIFAVWILSIVEKRLHkiVPNAID----IIVTPTIALLIVGLLTIFIFMPLAGFVSDSLVSVVNGIISIGGVFSG 314
Cdd:COG1299  227 GGIIAGFLAGYVVLWLKKKIK--LPKSLEglkpILIIPLLGTLITGLLMIYVIGPPIAALNTALTNWLNSMSGSNAVLLG 304
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895 315 FIIGAsflplvMLGlhhiftpihIEM---INQS---------GATYLLPIAAMAGAGQV---GAALALWVRCKR-NTTLR 378
Cdd:COG1299  305 AILGA------MMA---------FDMggpVNKAayafgtgllASGIYAPMAAVMAAGMVpplGLALATLLFKKKfTEEER 369
                        170
                 ....*....|....*....
gi 446081895 379 NTLKGALPVGFLGIGEPLI 397
Cdd:COG1299  370 EAGKAAFILGLSFITEGAI 388
PTS_EIIC_2 pfam13303
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ...
146-321 3.02e-03

Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.


Pssm-ID: 433101  Cd Length: 327  Bit Score: 39.87  E-value: 3.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  146 AGLIGGIAAVLSNLMVAGYISGA--WITQLITVFNVIKdgmlAYLAIFTGINAAKEFGATPGLGGVIGGTTLLTGIAGKN 223
Cdd:pfam13303   5 NGMALGIFATLIPGAILGEIGGAllILSLLITIGTIAQ----SLLGPAIGALVALQLGANPLVSASVGAAGFIGSGAVKF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446081895  224 ILMNVFTGeplqpGQGGIIGVIFAVWILSIVEKRLHKIvPNAIDIIVTPTIALLIVGLLTIFIFmPLAGFVSDSLVSVVN 303
Cdd:pfam13303  81 TEGGWFLI-----GTGDPINAFLAAAIAVLVGKLIGNK-KTKLDIIVLPIVVIVVGGLIGLLIL-PYVKPITEAIGNVIN 153
                         170
                  ....*....|....*...
gi 446081895  304 GIISIGGVFSGFIIGASF 321
Cdd:pfam13303 154 TATDLQPLIMGILIAVIF 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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