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Conserved domains on  [gi|446111832|ref|WP_000189687|]
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MULTISPECIES: HNH endonuclease [Bacillus]

Protein Classification

HNH endonuclease( domain architecture ID 10625969)

HNH endonuclease is a protein containing a (partial) HNH endonuclease signature motif which may catalyze the hydrolysis of DNA; HNH endonuclease signature motif containing protein catalyzes the hydrolysis of DNA; similar to Geobacter metallireducens HNH Endonuclease

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HNH_5 pfam14279
HNH endonuclease; This domain is related to other HNH domain families such as pfam01844. ...
 4-54 6.57e-14

HNH endonuclease; This domain is related to other HNH domain families such as pfam01844. Suggesting that these proteins have a nucleic acid cleaving function.


:

Pssm-ID: 464124 [Multi-domain]  Cd Length: 56  Bit Score: 64.66  E-value: 6.57e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446111832    4 CIICRKD--TKELSEQYVIPEILCGYYFTNSI---CDTCHEQMTTNIDRPLIRHKL 54
Cdd:pfam14279   1 CIYCGKEfpEKNLTIEHIIPESLGGKNKISNLqtlCKKCNSKKGHDVDAALSRHFL 56
 
Name Accession Description Interval E-value
HNH_5 pfam14279
HNH endonuclease; This domain is related to other HNH domain families such as pfam01844. ...
 4-54 6.57e-14

HNH endonuclease; This domain is related to other HNH domain families such as pfam01844. Suggesting that these proteins have a nucleic acid cleaving function.


Pssm-ID: 464124 [Multi-domain]  Cd Length: 56  Bit Score: 64.66  E-value: 6.57e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446111832    4 CIICRKD--TKELSEQYVIPEILCGYYFTNSI---CDTCHEQMTTNIDRPLIRHKL 54
Cdd:pfam14279   1 CIYCGKEfpEKNLTIEHIIPESLGGKNKISNLqtlCKKCNSKKGHDVDAALSRHFL 56
 
Name Accession Description Interval E-value
HNH_5 pfam14279
HNH endonuclease; This domain is related to other HNH domain families such as pfam01844. ...
 4-54 6.57e-14

HNH endonuclease; This domain is related to other HNH domain families such as pfam01844. Suggesting that these proteins have a nucleic acid cleaving function.


Pssm-ID: 464124 [Multi-domain]  Cd Length: 56  Bit Score: 64.66  E-value: 6.57e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446111832    4 CIICRKD--TKELSEQYVIPEILCGYYFTNSI---CDTCHEQMTTNIDRPLIRHKL 54
Cdd:pfam14279   1 CIYCGKEfpEKNLTIEHIIPESLGGKNKISNLqtlCKKCNSKKGHDVDAALSRHFL 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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