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Conserved domains on  [gi|446112916|ref|WP_000190771|]
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MULTISPECIES: head decoration protein [Enterobacteriaceae]

Protein Classification

head decoration protein( domain architecture ID 10502809)

head decoration protein similar to bacteriophage lambda head decoration protein D, which stabilizes the expansion of the capsid head shell after genome packaging

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HDPD pfam02924
Bacteriophage lambda head decoration protein D;
3-106 1.14e-12

Bacteriophage lambda head decoration protein D;


:

Pssm-ID: 427057  Cd Length: 115  Bit Score: 59.21  E-value: 1.14e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446112916    3 THYTELMAGTEALVTTLGIFSANKGVIPAFTPLM------QEDATGALVVW-----DGSSVGKAVYVSAVQIDTAKKTQA 71
Cdd:pfam02924   1 TLTEGRHLGDFLLSEAPGHYSRDTVTIAAGAGLLlgtvlgRITASGKLVPWdpaatDGSQTAVGILAAPVDATAADVAAV 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 446112916   72 QVYKTGVLNVDALNWPESVKElSAKVAAFVGSGIS 106
Cdd:pfam02924  81 AIARDAEVNRAALVWPASVTD-AQKAAAFAQLAAL 114
 
Name Accession Description Interval E-value
HDPD pfam02924
Bacteriophage lambda head decoration protein D;
3-106 1.14e-12

Bacteriophage lambda head decoration protein D;


Pssm-ID: 427057  Cd Length: 115  Bit Score: 59.21  E-value: 1.14e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446112916    3 THYTELMAGTEALVTTLGIFSANKGVIPAFTPLM------QEDATGALVVW-----DGSSVGKAVYVSAVQIDTAKKTQA 71
Cdd:pfam02924   1 TLTEGRHLGDFLLSEAPGHYSRDTVTIAAGAGLLlgtvlgRITASGKLVPWdpaatDGSQTAVGILAAPVDATAADVAAV 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 446112916   72 QVYKTGVLNVDALNWPESVKElSAKVAAFVGSGIS 106
Cdd:pfam02924  81 AIARDAEVNRAALVWPASVTD-AQKAAAFAQLAAL 114
 
Name Accession Description Interval E-value
HDPD pfam02924
Bacteriophage lambda head decoration protein D;
3-106 1.14e-12

Bacteriophage lambda head decoration protein D;


Pssm-ID: 427057  Cd Length: 115  Bit Score: 59.21  E-value: 1.14e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446112916    3 THYTELMAGTEALVTTLGIFSANKGVIPAFTPLM------QEDATGALVVW-----DGSSVGKAVYVSAVQIDTAKKTQA 71
Cdd:pfam02924   1 TLTEGRHLGDFLLSEAPGHYSRDTVTIAAGAGLLlgtvlgRITASGKLVPWdpaatDGSQTAVGILAAPVDATAADVAAV 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 446112916   72 QVYKTGVLNVDALNWPESVKElSAKVAAFVGSGIS 106
Cdd:pfam02924  81 AIARDAEVNRAALVWPASVTD-AQKAAAFAQLAAL 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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