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Conserved domains on  [gi|446151798|ref|WP_000229653|]
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MULTISPECIES: hypothetical protein [Acinetobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
XRE super family cl43426
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
4-75 5.17e-03

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


The actual alignment was detected with superfamily member COG1476:

Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 32.13  E-value: 5.17e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446151798  4 KNNVATLREQAGMTVYQLAKQCGfISNNHVlNRYikdaEAGKHI-SVYRALLIYTELKKagvceKFEDVFWLE 75
Cdd:COG1476   6 GNRLKELRKERGLTQEELAELLG-VSRQTI-SAI----ENGKYNpSLELALKIARALGV-----SLEELFSLE 67
 
Name Accession Description Interval E-value
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
4-75 5.17e-03

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 32.13  E-value: 5.17e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446151798  4 KNNVATLREQAGMTVYQLAKQCGfISNNHVlNRYikdaEAGKHI-SVYRALLIYTELKKagvceKFEDVFWLE 75
Cdd:COG1476   6 GNRLKELRKERGLTQEELAELLG-VSRQTI-SAI----ENGKYNpSLELALKIARALGV-----SLEELFSLE 67
 
Name Accession Description Interval E-value
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
4-75 5.17e-03

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 32.13  E-value: 5.17e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446151798  4 KNNVATLREQAGMTVYQLAKQCGfISNNHVlNRYikdaEAGKHI-SVYRALLIYTELKKagvceKFEDVFWLE 75
Cdd:COG1476   6 GNRLKELRKERGLTQEELAELLG-VSRQTI-SAI----ENGKYNpSLELALKIARALGV-----SLEELFSLE 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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