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Conserved domains on  [gi|446168169|ref|WP_000246024|]
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MULTISPECIES: acid resistance gamma-aminobutyrate antiporter GadC [Enterobacteriaceae]

Protein Classification

similar to glutamate/gamma-aminobutyrate antiporter( domain architecture ID 11489955)

protein similar to glutamate/gamma-aminobutyrate antiporter

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
2A0307_GadC TIGR00910
glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted ...
 8-509 0e+00

glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]


:

Pssm-ID: 129988  Cd Length: 507  Bit Score: 819.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169    8 GKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRW 87
Cdd:TIGR00910   1 GKAKKLSLFGFFAITASMVLAVYEYPTFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGERF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   88 GFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLP 167
Cdd:TIGR00910  81 GFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  168 AFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAIC 247
Cdd:TIGR00910 161 AFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAIC 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  248 LSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPA 327
Cdd:TIGR00910 241 LDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  328 AFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPG 407
Cdd:TIGR00910 321 AFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  408 GKGVKLVVAVVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANTGVTLEPINSKNA 487
Cdd:TIGR00910 401 GIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGHANTGVTIEEINHFKA 480

                         490       500
                  ....*....|....*....|..
gi 446168169  488 PKGHFFLHPRARSPHYIVMNDK 509
Cdd:TIGR00910 481 GDGHFAIHPAARGEHHIIKKDE 502
 
Name Accession Description Interval E-value
2A0307_GadC TIGR00910
glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted ...
 8-509 0e+00

glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 129988  Cd Length: 507  Bit Score: 819.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169    8 GKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRW 87
Cdd:TIGR00910   1 GKAKKLSLFGFFAITASMVLAVYEYPTFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGERF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   88 GFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLP 167
Cdd:TIGR00910  81 GFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  168 AFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAIC 247
Cdd:TIGR00910 161 AFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAIC 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  248 LSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPA 327
Cdd:TIGR00910 241 LDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  328 AFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPG 407
Cdd:TIGR00910 321 AFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  408 GKGVKLVVAVVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANTGVTLEPINSKNA 487
Cdd:TIGR00910 401 GIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGHANTGVTIEEINHFKA 480

                         490       500
                  ....*....|....*....|..
gi 446168169  488 PKGHFFLHPRARSPHYIVMNDK 509
Cdd:TIGR00910 481 GDGHFAIHPAARGEHHIIKKDE 502
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
1-431 1.37e-38

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 146.20  E-value: 1.37e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   1 MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPT----FATSGFSLVFFLLLGGILwFIPVGLCAAEMATVDGwEEGGVF 76
Cdd:COG0531    1 MSRGESSELKRKLGLFDLVALGVGAIIGAGIFVLpglaAGLAGPAAILAWLIAGLL-ALLVALSYAELASAFP-RAGGAY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  77 AWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNedpitktIAALIILWALALTQFGGTKYTARIA 156
Cdd:COG0531   79 TYARRALGPLLGFLAGWALLLSYVLAVAAVAVAFGGYLSSLFPAGGSV-------LIALVLILLLTLLNLRGVKESAKVN 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 157 KVGFFAgILLPAFILIALAAIYLHSGAPVAIEMDSKTFFpdfskvGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPL 236
Cdd:COG0531  152 NILTVL-KLLVLLLFIVVGLFAFDPANFTPFLPAGGGLS------GVLAALALAFFAFTGFEAIANLAEEAKNPKRNIPR 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 237 AMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVmqtFTVLMSHVAPeiEWTVRVISALLLLGVLAEIASWIVGPSRGM 316
Cdd:COG0531  225 AIILSLLIVGVLYILVSLALTGVVPYDELAASGAP---LADAAEAVFG--PWGAILIALGALLSLLGALNASILGASRLL 299

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 317 YVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNtgggnnmSFLIALALTVVIYLCAYFMLFIGYIVLVLK 395
Cdd:COG0531  300 YAMARDGLLPKVFAKVHpRFGTPVNAILLTGVIALLLLLLGAA-------SFTALASLASVGVLLAYLLVALAVIVLRRR 372

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 446168169 396 HPDLKRTFNIPGgkgvkLVVAVVGLLTSIMAFIVSF 431
Cdd:COG0531  373 RPDLPRPFRVPL-----PLIPILGILLCLFLLYLLG 403
AA_permease_2 pfam13520
Amino acid permease;
13-445 3.94e-38

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 144.76  E-value: 3.94e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   13 LTLLGFFAITASMVMAVYEYPT--FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVdGWEEGGVFAWVSNTLGPRWGFA 90
Cdd:pfam13520   1 LGLLSAFALVIGSVIGSGIFVAplVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA-LPRSGGIYVYLENAFGKFVAFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   91 AISFGYLQIAIGFIPMLYFVLGALSYILKwPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFI 170
Cdd:pfam13520  80 AGWSNWFAYVLGLASSASVAASYLLSALG-PDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLIL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  171 LIALAAIYLHSGAPVAIEMDSKTFFPDFSKvGTLVVFVAFILSYMGVEASATHVNEMSNpgRDYPLAMLLLMVAAICLSS 250
Cdd:pfam13520 159 IIILGLVTADGGGFNLLSGEWHTFFPDGWP-GVFAGFLGVLWSFTGFESAANVSEEVKK--RNVPKAIFIGVIIVGVLYI 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  251 VGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPeiEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAA-- 328
Cdd:pfam13520 236 LVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGG--KWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSrf 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  329 FAKMNKNGVPVTLVISQLVITSIALIILtntgGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNipgg 408
Cdd:pfam13520 314 FAKVNKFGSPIRAIILTAILSLILLLLF----LLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPG---- 385

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 446168169  409 kgvKLVVAVVGLLTSIMAFIVSFLPPDNIQGDSTDMY 445
Cdd:pfam13520 386 ---RWPVAIFGILFSLFLIVALFFPPVGPATGSSLNY 419
PRK15238 PRK15238
inner membrane transporter YjeM; Provisional
 39-440 4.33e-19

inner membrane transporter YjeM; Provisional


Pssm-ID: 237929 [Multi-domain]  Cd Length: 496  Bit Score: 90.00  E-value: 4.33e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  39 GFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYIL 118
Cdd:PRK15238  36 GYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 119 -------KWPALNEDPiTKTIAALIILWALALTQFG--GTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEM 189
Cdd:PRK15238 116 fgkdttqTWHFLGLNS-TQVVGILAVIWMILVTFVAskGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPI 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 190 DSKTFF----PDFSKVGTLVVFVAF-ILSYMGVEASATHVNEMSNPGRDYPLAmllLMVAAICLSSVGGLSIAM------ 258
Cdd:PRK15238 195 GVSSFVtspnPAYQSPIAVLSFVVFaIFAYGGIEAVGGLVDKTENPEKNFPKG---IIIAAIVISIGYSLAIFLwgvstn 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 259 ---VIPGNEINL---SAGVMQTFTVL------MSHVAPEI--EWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNL 324
Cdd:PRK15238 272 wqqVLSNKSVNLgniTYVLMNNLGYTlghalgLSPAASLTlgVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKAL 351

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 325 LPAAFAKMNKNGVPVTLVISQLVITSIaLIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFN 404
Cdd:PRK15238 352 WPKKMTKLNKNGMPANAMWLQCIIVSV-FILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKKKKDIDRPFV 430

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 446168169 405 IPGGKGVKLVVAVVGLLTSIMAFIVSFLPPdNIQGD 440
Cdd:PRK15238 431 VFKTKKSTLIATIVVVLVVGFANVFTIIQP-VIEGD 465
 
Name Accession Description Interval E-value
2A0307_GadC TIGR00910
glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted ...
 8-509 0e+00

glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 129988  Cd Length: 507  Bit Score: 819.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169    8 GKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRW 87
Cdd:TIGR00910   1 GKAKKLSLFGFFAITASMVLAVYEYPTFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGERF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   88 GFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLP 167
Cdd:TIGR00910  81 GFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  168 AFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAIC 247
Cdd:TIGR00910 161 AFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAIC 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  248 LSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPA 327
Cdd:TIGR00910 241 LDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  328 AFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPG 407
Cdd:TIGR00910 321 AFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  408 GKGVKLVVAVVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVHDRKGKANTGVTLEPINSKNA 487
Cdd:TIGR00910 401 GIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGHANTGVTIEEINHFKA 480

                         490       500
                  ....*....|....*....|..
gi 446168169  488 PKGHFFLHPRARSPHYIVMNDK 509
Cdd:TIGR00910 481 GDGHFAIHPAARGEHHIIKKDE 502
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
1-431 1.37e-38

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 146.20  E-value: 1.37e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   1 MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPT----FATSGFSLVFFLLLGGILwFIPVGLCAAEMATVDGwEEGGVF 76
Cdd:COG0531    1 MSRGESSELKRKLGLFDLVALGVGAIIGAGIFVLpglaAGLAGPAAILAWLIAGLL-ALLVALSYAELASAFP-RAGGAY 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  77 AWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNedpitktIAALIILWALALTQFGGTKYTARIA 156
Cdd:COG0531   79 TYARRALGPLLGFLAGWALLLSYVLAVAAVAVAFGGYLSSLFPAGGSV-------LIALVLILLLTLLNLRGVKESAKVN 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 157 KVGFFAgILLPAFILIALAAIYLHSGAPVAIEMDSKTFFpdfskvGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPL 236
Cdd:COG0531  152 NILTVL-KLLVLLLFIVVGLFAFDPANFTPFLPAGGGLS------GVLAALALAFFAFTGFEAIANLAEEAKNPKRNIPR 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 237 AMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVmqtFTVLMSHVAPeiEWTVRVISALLLLGVLAEIASWIVGPSRGM 316
Cdd:COG0531  225 AIILSLLIVGVLYILVSLALTGVVPYDELAASGAP---LADAAEAVFG--PWGAILIALGALLSLLGALNASILGASRLL 299

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 317 YVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNtgggnnmSFLIALALTVVIYLCAYFMLFIGYIVLVLK 395
Cdd:COG0531  300 YAMARDGLLPKVFAKVHpRFGTPVNAILLTGVIALLLLLLGAA-------SFTALASLASVGVLLAYLLVALAVIVLRRR 372

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 446168169 396 HPDLKRTFNIPGgkgvkLVVAVVGLLTSIMAFIVSF 431
Cdd:COG0531  373 RPDLPRPFRVPL-----PLIPILGILLCLFLLYLLG 403
AA_permease_2 pfam13520
Amino acid permease;
13-445 3.94e-38

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 144.76  E-value: 3.94e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   13 LTLLGFFAITASMVMAVYEYPT--FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVdGWEEGGVFAWVSNTLGPRWGFA 90
Cdd:pfam13520   1 LGLLSAFALVIGSVIGSGIFVAplVASGGPALIVWGWIAAIIFSLAVGLVYAELSSA-LPRSGGIYVYLENAFGKFVAFL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   91 AISFGYLQIAIGFIPMLYFVLGALSYILKwPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFI 170
Cdd:pfam13520  80 AGWSNWFAYVLGLASSASVAASYLLSALG-PDLVPTTWLTYGIAIAILIIFAIINIRGVRESAKIQNILGILKLLLPLIL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  171 LIALAAIYLHSGAPVAIEMDSKTFFPDFSKvGTLVVFVAFILSYMGVEASATHVNEMSNpgRDYPLAMLLLMVAAICLSS 250
Cdd:pfam13520 159 IIILGLVTADGGGFNLLSGEWHTFFPDGWP-GVFAGFLGVLWSFTGFESAANVSEEVKK--RNVPKAIFIGVIIVGVLYI 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  251 VGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPeiEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAA-- 328
Cdd:pfam13520 236 LVNIAFFGVVPDDEIALSSGLGQVAALLFQAVGG--KWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSrf 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  329 FAKMNKNGVPVTLVISQLVITSIALIILtntgGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNipgg 408
Cdd:pfam13520 314 FAKVNKFGSPIRAIILTAILSLILLLLF----LLSPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPG---- 385

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 446168169  409 kgvKLVVAVVGLLTSIMAFIVSFLPPDNIQGDSTDMY 445
Cdd:pfam13520 386 ---RWPVAIFGILFSLFLIVALFFPPVGPATGSSLNY 419
PRK15238 PRK15238
inner membrane transporter YjeM; Provisional
 39-440 4.33e-19

inner membrane transporter YjeM; Provisional


Pssm-ID: 237929 [Multi-domain]  Cd Length: 496  Bit Score: 90.00  E-value: 4.33e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  39 GFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYIL 118
Cdd:PRK15238  36 GYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 119 -------KWPALNEDPiTKTIAALIILWALALTQFG--GTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEM 189
Cdd:PRK15238 116 fgkdttqTWHFLGLNS-TQVVGILAVIWMILVTFVAskGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPI 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 190 DSKTFF----PDFSKVGTLVVFVAF-ILSYMGVEASATHVNEMSNPGRDYPLAmllLMVAAICLSSVGGLSIAM------ 258
Cdd:PRK15238 195 GVSSFVtspnPAYQSPIAVLSFVVFaIFAYGGIEAVGGLVDKTENPEKNFPKG---IIIAAIVISIGYSLAIFLwgvstn 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 259 ---VIPGNEINL---SAGVMQTFTVL------MSHVAPEI--EWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNL 324
Cdd:PRK15238 272 wqqVLSNKSVNLgniTYVLMNNLGYTlghalgLSPAASLTlgVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKAL 351

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 325 LPAAFAKMNKNGVPVTLVISQLVITSIaLIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFN 404
Cdd:PRK15238 352 WPKKMTKLNKNGMPANAMWLQCIIVSV-FILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKKKKDIDRPFV 430

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 446168169 405 IPGGKGVKLVVAVVGLLTSIMAFIVSFLPPdNIQGD 440
Cdd:PRK15238 431 VFKTKKSTLIATIVVVLVVGFANVFTIIQP-VIEGD 465
AA_permease pfam00324
Amino acid permease;
32-432 9.82e-15

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 76.20  E-value: 9.82e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   32 YPTFATSGFSLVFFLLLGGILWFIpVGLCAAEMATVdGWEEGGVFAWVSNTLGPRWGFAaISFGYLQIAIGFIPmlyFVL 111
Cdd:pfam00324  21 SVLGQAGPAGALLGYLISGVVIFL-VMLSLGEISTN-GPVSGGFYTYASRFLGPSLGFA-TGWNYWLSWITVLA---LEL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  112 GALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARiAKVGFFAGILLPAFILIALAAIYLHSGAPVA----- 186
Cdd:pfam00324  95 TAASILIQFWELVPDIPYLWVWGAVFLVLLTIINLVGVKWYGE-AEFWFALIKIIAIIGFIIVGIILLSGGNPNDgaifr 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  187 --IEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNE 264
Cdd:pfam00324 174 ylGDNGGKNNFPPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAIGLLVPWND 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  265 INLSAGVMQT-------FTVLMSHVAPEIewtvrvISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGV 337
Cdd:pfam00324 254 PGLLNDSASAaspfvifFKFLGISGLAPL------INAVILTAALSAANSSLYSGSRMLYSLARDGLAPKFLKKVDKRGV 327

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  338 PVTLVISQLVitsIALIILTNTGGGNNMSFLIALALTVVIylcayfmLFIGYIVLVLKHPDLKRTFNIPGGK----GVKL 413
Cdd:pfam00324 328 PLRAILVSMV---ISLLALLLASLNPAIVFNFLLAISGLS-------GLIVWGLISLSHLRFRKAFKYQGRSidelPFKA 397

                         410
                  ....*....|....*....
gi 446168169  414 VVAVVGLLTSIMAFIVSFL 432
Cdd:pfam00324 398 PLGPLGVILGLAAIIIILI 416
PRK10644 PRK10644
arginine/agmatine antiporter;
62-389 4.31e-09

arginine/agmatine antiporter;


Pssm-ID: 182613 [Multi-domain]  Cd Length: 445  Bit Score: 58.65  E-value: 4.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  62 AEMATVDGwEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYIlkWPALnEDPITKTIAALIILWAL 141
Cdd:PRK10644  61 AKMSSLDP-SPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYF--FPIL-KDPLVLTITCVVVLWIF 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 142 ALTQFGGTKYTARIAKVG-FFAgiLLPaFILIALAAIYLHSGApVAIEMDSKTFFPDFSKVGTLVVFVafILSYMGVEAS 220
Cdd:PRK10644 137 VLLNIVGPKMITRVQAVAtVLA--LIP-IVGIAVFGWFWFRGE-TYMAAWNVSGLGTFGAIQSTLNVT--LWSFIGVESA 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 221 ATHVNEMSNPGRDYPLAMLL-LMVAAIC--LSSVgglSIAMVIPGNEINLSAGVMQTFTVLMSHvapeiEWTVRVISALL 297
Cdd:PRK10644 211 SVAAGVVKNPKRNVPIATIGgVLIAAVCyvLSST---AIMGMIPNAALRVSASPFGDAARMALG-----DTAGAIVSFCA 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 298 LLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFL--IALALTV 375
Cdd:PRK10644 283 AAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVssVSVIFTL 362

                        330
                 ....*....|....*.
gi 446168169 376 V--IYLCAYfMLFIGY 389
Cdd:PRK10644 363 VpyLYTCAA-LLLLGH 377
2A0303 TIGR00906
cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides ...
 58-351 1.23e-06

cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273330 [Multi-domain]  Cd Length: 557  Bit Score: 50.97  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   58 GLCAAEMAtVDGWEEGGVFAWVSNTLGPRWGFaaisfgylqIAIGFIPMLYfVLGALSYILKWPALNEDPITKTIA---- 133
Cdd:TIGR00906  79 GFCYAEFG-ARVPKAGSAYLYSYVTVGELWAF---------ITGWNLILEY-VIGTAAVARSWSAYFDELLNKQIGqfrr 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  134 -----------------ALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIA---LAAIYLHSGAPVAIEMDskt 193
Cdd:TIGR00906 148 tyfklnydglaeypdffAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAgftKADVANWSITEEKGAGG--- 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  194 FFPdFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAM---LLLMVAAICLSSVgglSIAMVIPGNEINLSAg 270
Cdd:TIGR00906 225 FMP-YGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIvtsLLVCFVAYFLMSA---ALTLMMPYYLLDPDA- 299

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  271 vmqTFTVLMSHVApeIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVIT 349
Cdd:TIGR00906 300 ---PFPVAFEYVG--WDPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINsKTKTPINATVVSGAIA 374


                  ..
gi 446168169  350 SI 351
Cdd:TIGR00906 375 AL 376
2A0310 TIGR00913
amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]
 42-372 3.20e-06

amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273334  Cd Length: 478  Bit Score: 49.59  E-value: 3.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   42 LVFFLLLGGILWFipVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAisfGYLQIAIGFIPMLYFVLGALSYILKW- 120
Cdd:TIGR00913  39 LIGYAIMGSIIYC--VMQSLGEMATFYPVVSGSFATYASRFVDPAFGFAV---GWNYWLQWLIVLPLELVTASMTIQYWt 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  121 PALNEDP-ITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIA--------LAAIYLHSGAPVAIEMDS 191
Cdd:TIGR00913 114 DKVNPAVwIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCgggpnhgyIGFRYWHDPGAFAGGTIG 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  192 KTFfpdfskVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLlMVAAICLSSVGGL-SIAMVIPGNEINLSAG 270
Cdd:TIGR00913 194 GRF------KGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKR-TFWRILVFYILTLfLIGFLVPYNDPRLLSS 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  271 vmqtFTVLMSHVAP--------EIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLV 342
Cdd:TIGR00913 267 ----SSSSDSAASPfviaiqnhGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVDRRGVPYVAV 342

                         330       340       350
                  ....*....|....*....|....*....|
gi 446168169  343 ISQLVITSIALIIlTNTGGGNNMSFLIALA 372
Cdd:TIGR00913 343 IVSSLFGLLAFLA-VSKKEAEVFTWLLNIS 371
LysP COG0833
Amino acid permease [Amino acid transport and metabolism];
168-354 4.39e-06

Amino acid permease [Amino acid transport and metabolism];


Pssm-ID: 440595 [Multi-domain]  Cd Length: 467  Bit Score: 49.01  E-value: 4.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 168 AFILIALAAIY--LHSGAPV-AIEMDSKTFFPDFSKvGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAM------ 238
Cdd:COG0833  166 AFIIVGLLMIFgiIGGHAPGfSNFTTGDGPFPGGFL-AILGVMMIVGFSFQGTELIGIAAGESENPEKTIPKAIrqvfwr 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 239 -LLLMVAAIclssvggLSIAMVIPGNEINLSAGVmqtFTVLMSHVApeIEWTVRVISALLLLGVLAEIASWIVGPSRGMY 317
Cdd:COG0833  245 iLLFYILAI-------FVIAALIPYTDAGVAESP---FTLVFERAG--IPYAADIMNAVILTAVLSAGNSGLYASTRMLW 312

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446168169 318 VTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALI 354
Cdd:COG0833  313 SLAKEGMAPKIFAKLNKRGVPLNALLATMAVGLLALL 349
2A0308 TIGR00911
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 39-439 9.81e-06

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 48.20  E-value: 9.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169   39 GFSLVFFLLLGgiLWFIPVGLCAAEMATVDGwEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGalSYIL 118
Cdd:TIGR00911  77 GLALIMWAVCG--IFSIVGALVYAELGTTIP-KSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFA--IYIL 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  119 KwPALNEDPIT----KTIAALIILWALALTQFGgTKYTARIAKVgFFAGILLPAFILIALAAIYLHSGApvAIEMDSKTF 194
Cdd:TIGR00911 152 T-PVFPDCEVPewaiRLVAVLCVLLLTLVNCLS-VKWATRVQDI-FTACKLLALLLIIITGWVQLGKGG--VESLNPKNA 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  195 FPDFSK-VGTLVV-FVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVM 272
Cdd:TIGR00911 227 FEGTETsAGGIVLaFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVA 306

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  273 QTF-TVLMSHVApeiewtvRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNgvPVTLVISQLVITSI 351
Cdd:TIGR00911 307 VDFgERLLGVMS-------WAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVK--RLTPLPSLLIVCTL 377

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  352 ALIILTNtgggNNMSFLIALaLTVVIYLCaYFMLFIGYIVLVLKHPDLKRTFNIPggkgvkLVVAVVGLLTSIMAFIVSF 431
Cdd:TIGR00911 378 TLLMLFS----GDIYSLINL-ISFANWLF-NALAVAGLLWLRYKRPEMNRPIKVP------LFFPVFFLLSCLFLIILSL 445


                  ....*...
gi 446168169  432 LPPDNIQG 439
Cdd:TIGR00911 446 YSPPVGCG 453
cadB PRK10435
cadaverine/lysine antiporter;
71-378 4.55e-05

cadaverine/lysine antiporter;


Pssm-ID: 182458  Cd Length: 435  Bit Score: 45.90  E-value: 4.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169  71 EEGGVFAWvSNTLGPRWGFAAisfGYLQIAIGFIPMLYFVLGALSYI-LKWPALNeDPITKTIAALIILWALALTQFGGT 149
Cdd:PRK10435  66 QQGGPIAY-AGEISPAFGFQT---GVLYYHANWIGNLAIGITAVSYLsTFFPVLN-DPIPAGIACIAIVWVFTFVNMLGG 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 150 KYTARIAKVGFFAgILLPafiLIALAAIYLHSGAPVAIEMDSKTffPDFSKVGTLVVFVAFIL-SYMGVEASATHVNEMS 228
Cdd:PRK10435 141 TWVSRLTTIGLVL-VLIP---VVGTAIVGWHWFDAATYAANWNT--SDTTDGHAIIKSILLCLwAFVGVESAAVSTGMVK 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 229 NPGRDYPLAMLLlmvaAICLSSVGGLSIAMVIPGneiNLSAGVMQTFTVLMSHVAPEI--EWTVRVISALLLLGVLAEIA 306
Cdd:PRK10435 215 NPKRTVPLATML----GTGLAGIIYIAATQVISG---MFPASVMAASGAPFAISASTIlgNWAAPLVSAFTAFACLTSLG 287

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446168169 307 SWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVT-LVISQLVITSIALIILTNTGGGNNMSFL------IALALTVVIY 378
Cdd:PRK10435 288 SWMMLVGQAGVRAANDGNFPKVYGEVDKNGIPKKgLLLAAVKMTALMILITLMNSSGGKASDLfgeltgIAVLLTMLPY 366
potE PRK10655
putrescine transporter; Provisional
 127-426 6.14e-04

putrescine transporter; Provisional


Pssm-ID: 182622  Cd Length: 438  Bit Score: 42.32  E-value: 6.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 127 PITKTIAALIILWALALTQFGGTKYTARIAKVGFFaGILLPAfILIALAAIYLHSGApVAIEMDSKTFFPDFSKVGtlvV 206
Cdd:PRK10655 120 PVQICLATIGVLWLCTVANFGGARITGQISSVTVW-GVIIPV-VGLSIIGWFWFSPS-LYVAAWNPHHLPFFSAVG---S 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 207 FVAFIL-SYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEI-NLSAGVMQTFTVLMShvap 284
Cdd:PRK10655 194 SIAMTLwAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELaNSTAPFGLAFAQMFN---- 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 285 eiEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSiaLIILTNTGGGNN 364
Cdd:PRK10655 270 --PTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKVDAPVQGMLIIVVIQS--LLSLMTISPSLN 345

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446168169 365 MSFLIALALTVVIYLCAYFMLFIGYIVlvlkhpdLKRTFNIPGGKG-VKLVVAVVGLLTSIMA 426
Cdd:PRK10655 346 SQFNVLVNLAVVTNIIPYILSMAALVI-------IQKVANVPPSKAkVANFIAFVGALYSFYA 401
PRK11021 PRK11021
putative transporter; Provisional
 213-381 8.89e-04

putative transporter; Provisional


Pssm-ID: 236823 [Multi-domain]  Cd Length: 410  Bit Score: 41.82  E-value: 8.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 213 SYMGVEASATHVNEMSNPGRDYPLAMLL-LMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVApeiewtVR 291
Cdd:PRK11021 189 CFVGIEAFAHLASEFKNPERDFPRALMIgLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYA------LW 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 292 VISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPV--TLVISQLVITSIALIILTntggGNNMSFLI 369
Cdd:PRK11021 263 VICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVnaLNAVLGCCAVSILLIYAL----GLNLEALI 338

                        170
                 ....*....|....
gi 446168169 370 ALA--LTVVIYLCA 381
Cdd:PRK11021 339 AYAngIFVLIYLLC 352
PRK11387 PRK11387
S-methylmethionine permease;
164-346 1.09e-03

S-methylmethionine permease;


Pssm-ID: 236904  Cd Length: 471  Bit Score: 41.38  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 164 ILLPAFILIALAAIYLH------SGAPVAIEMDSKTFFPDfSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237
Cdd:PRK11387 164 VTILAFIVLGGAAIFGFipmqdgSPAPGLRNLTAEGWFPH-GGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVA 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446168169 238 MLLLMVAAICLSSVGGLSIAMVIPGNEinlsAGVMQTFTVLMSHVApEIEWTVRVISALLLLGVLAEIASWIVGPSRGMY 317
Cdd:PRK11387 243 IRTTIARLVIFFVGTVLVLAALIPMQQ----AGVEKSPFVLVFEKV-GIPYAADIFNFVILTAILSAANSGLYASGRMLW 317

                        170       180       190
                 ....*....|....*....|....*....|
gi 446168169 318 VTAQKNLLPAAFAKMNKNGVPVT-LVISQL 346
Cdd:PRK11387 318 SLSNEGTLPACFARLTKRGIPLTaLSVSML 347
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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