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Conserved domains on  [gi|446173797|ref|WP_000251652|]
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MULTISPECIES: membrane protein insertion efficiency factor YidD [Acinetobacter]

Protein Classification

membrane protein insertion efficiency factor YidD( domain architecture ID 10014665)

membrane protein insertion efficiency factor YidD may be involved in the insertion of integral membrane proteins into the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14386 PRK14386
membrane protein insertion efficiency factor YidD;
1-106 1.13e-77

membrane protein insertion efficiency factor YidD;


:

Pssm-ID: 172862  Cd Length: 106  Bit Score: 223.37  E-value: 1.13e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIRFISFHQ 80
Cdd:PRK14386   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIRFISFHQ 80

                         90       100
                 ....*....|....*....|....*.
gi 446173797  81 IDSQTHHVAVPFRDRLMKQNLSNHLG 106
Cdd:PRK14386  81 IDSQTHHVAVPFRDRLMKQNLSNHLG 106
 
Name Accession Description Interval E-value
PRK14386 PRK14386
membrane protein insertion efficiency factor YidD;
1-106 1.13e-77

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172862  Cd Length: 106  Bit Score: 223.37  E-value: 1.13e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIRFISFHQ 80
Cdd:PRK14386   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIRFISFHQ 80

                         90       100
                 ....*....|....*....|....*.
gi 446173797  81 IDSQTHHVAVPFRDRLMKQNLSNHLG 106
Cdd:PRK14386  81 IDSQTHHVAVPFRDRLMKQNLSNHLG 106
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 3-68 1.01e-40

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 128.65  E-value: 1.01e-40
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446173797    3 RILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPV 68
Cdd:pfam01809   2 KLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDPV 67
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 1-68 6.78e-40

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 126.77  E-value: 6.78e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPV 68
Cdd:COG0759    4 MKRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 9-77 3.28e-28

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 97.53  E-value: 3.28e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446173797    9 IRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIRFIS 77
Cdd:TIGR00278   5 IRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPVPKKKQILES 73
 
Name Accession Description Interval E-value
PRK14386 PRK14386
membrane protein insertion efficiency factor YidD;
1-106 1.13e-77

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172862  Cd Length: 106  Bit Score: 223.37  E-value: 1.13e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIRFISFHQ 80
Cdd:PRK14386   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIRFISFHQ 80

                         90       100
                 ....*....|....*....|....*.
gi 446173797  81 IDSQTHHVAVPFRDRLMKQNLSNHLG 106
Cdd:PRK14386  81 IDSQTHHVAVPFRDRLMKQNLSNHLG 106
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 3-68 1.01e-40

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 128.65  E-value: 1.01e-40
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446173797    3 RILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPV 68
Cdd:pfam01809   2 KLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDPV 67
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 1-68 6.78e-40

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 126.77  E-value: 6.78e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPV 68
Cdd:COG0759    4 MKRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
PRK14387 PRK14387
membrane protein insertion efficiency factor YidD;
3-71 5.82e-30

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184655  Cd Length: 84  Bit Score: 102.33  E-value: 5.82e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446173797   3 RILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPK 71
Cdd:PRK14387   6 RTVDLGLRAYKLTLSPLIGRQCRFTPSCSEYTAAALKDHGPLKGSWLGLRRICRCNPFGGSGYDPPPPR 74
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 9-77 3.28e-28

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 97.53  E-value: 3.28e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446173797    9 IRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIRFIS 77
Cdd:TIGR00278   5 IRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPVPKKKQILES 73
PRK14371 PRK14371
hypothetical protein; Provisional
 9-70 6.98e-26

hypothetical protein; Provisional


Pssm-ID: 172847  Cd Length: 81  Bit Score: 91.91  E-value: 6.98e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446173797   9 IRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPP 70
Cdd:PRK14371   9 IQFYRYAISPLMASHCRFYPSCSCYAYEAIENHGLLRGGWLSVRRLGRCHPWNPGGYDPVPP 70
PRK14389 PRK14389
membrane protein insertion efficiency factor YidD;
1-78 2.50e-25

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184656  Cd Length: 98  Bit Score: 90.76  E-value: 2.50e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP---PKAIRFIS 77
Cdd:PRK14389   2 MRRLLMALVRGYRLLLSPWLGSACRFEPTCSAYSLQALEQHGAAAGSYLTLRRLARCHPWCDGGHDPVPqekPRGMRLFS 81


                 .
gi 446173797  78 F 78
Cdd:PRK14389  82 R 82
PRK14388 PRK14388
membrane protein insertion efficiency factor YidD;
1-69 3.15e-25

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172864  Cd Length: 82  Bit Score: 90.34  E-value: 3.15e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
Cdd:PRK14388   1 MTRILLLLLRFYQYFISPLLGNNCRFHPTCSEYAKEAISMHGSIKGLWFTFKRIIKCQPFCDGGYDTVP 69
PRK14373 PRK14373
hypothetical protein; Provisional
 1-69 1.15e-24

hypothetical protein; Provisional


Pssm-ID: 172849  Cd Length: 73  Bit Score: 88.52  E-value: 1.15e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
Cdd:PRK14373   5 LSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPFGGHGHDPVP 73
PRK14380 PRK14380
hypothetical protein; Provisional
 9-70 2.20e-24

hypothetical protein; Provisional


Pssm-ID: 184654  Cd Length: 81  Bit Score: 88.08  E-value: 2.20e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446173797   9 IRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPP 70
Cdd:PRK14380  16 IKMYQYFISPLITPCCRYYPSCSEYADSAIKHYGVIKGLLMALNRLSRCHPWSKGGYDPLFP 77
PRK14370 PRK14370
hypothetical protein; Provisional
 3-69 3.00e-24

hypothetical protein; Provisional


Pssm-ID: 184651  Cd Length: 120  Bit Score: 88.75  E-value: 3.00e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446173797   3 RILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
Cdd:PRK14370  11 KLLLAFIHFYQRIISPILPARCRYYPTCSNYGKQAIAWHGVGKGSLLLLKRIGRCHPLGGHGIDFVP 77
PRK14369 PRK14369
membrane protein insertion efficiency factor YidD;
8-71 3.20e-24

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184650  Cd Length: 119  Bit Score: 88.96  E-value: 3.20e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446173797   8 FIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPK 71
Cdd:PRK14369   8 LIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAIKGTALTAWRILRCNPWSLGGVDHVPPR 71
PRK14381 PRK14381
membrane protein insertion efficiency factor YidD;
2-73 6.93e-23

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172857  Cd Length: 103  Bit Score: 84.91  E-value: 6.93e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446173797   2 VRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAI 73
Cdd:PRK14381  12 VRICLGLIHLYRWTISPLLGSPCRFFPSCSQYALQALKHHGCIMGLWLTIKRIGKCGPWHPGGIDLVPMTTL 83
PRK14383 PRK14383
membrane protein insertion efficiency factor YidD;
1-69 9.06e-22

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237698 [Multi-domain]  Cd Length: 84  Bit Score: 81.54  E-value: 9.06e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446173797   1 MVRILRWfirlYQIAISPLL-GPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
Cdd:PRK14383   8 LVRAVRW----YQRVLSPRKpAPTCRFSPTCSQYAVEAIERHGALKGGWLALWRVLRCNPLVPGGFDPVP 73
PRK14378 PRK14378
membrane protein insertion efficiency factor YidD;
9-74 4.00e-21

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237696  Cd Length: 103  Bit Score: 80.38  E-value: 4.00e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446173797   9 IRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIR 74
Cdd:PRK14378  20 IRLYRRVVSPFYGDVCRYYPSCSAYGLEAVQEHGLIFGGYLAVWRVCRCHPWAEGGIDDVPARGVQ 85
PRK14379 PRK14379
membrane protein insertion efficiency factor YidD;
1-71 1.11e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237697  Cd Length: 95  Bit Score: 76.40  E-value: 1.11e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPK 71
Cdd:PRK14379   1 MRKILIFLVRVYQKFISPILPPSCRYYPTCSSYMIDALKKHGPILGLIMGLARILRCNPFIRGGVDPVPDY 71
PRK14375 PRK14375
membrane protein insertion efficiency factor YidD;
8-71 2.54e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172851  Cd Length: 70  Bit Score: 75.03  E-value: 2.54e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446173797   8 FIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSG-YDPVPPK 71
Cdd:PRK14375   2 LINLYRYCISPFIPARCRYYPTCSEYALEALKTHGILKGLYLTTRRLLRCHPLSKRDyYDLVPCK 66
PRK14372 PRK14372
membrane protein insertion efficiency factor YidD;
1-69 3.95e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172848  Cd Length: 97  Bit Score: 74.97  E-value: 3.95e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446173797   1 MVRILRWfirlYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
Cdd:PRK14372   1 MIRGIRW----YQQRISANTPPCCKYYPSCSNYAIEAIERFGAFKGGVLAVLRLLRCRPWSRGGIDDVP 65
PRK14382 PRK14382
hypothetical protein; Provisional
 1-66 2.94e-18

hypothetical protein; Provisional


Pssm-ID: 172858  Cd Length: 68  Bit Score: 72.11  E-value: 2.94e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYD 66
Cdd:PRK14382   1 MKRLLIKFIKFYQKFISPLYPSSCRFYPTCSTYAILSIEKYGALKGSLKAFWRILRCNPFSKGGVD 66
PRK14391 PRK14391
membrane protein insertion efficiency factor YidD;
1-74 4.42e-18

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172867  Cd Length: 84  Bit Score: 71.98  E-value: 4.42e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAIR 74
Cdd:PRK14391   1 MNQFVIQLIQLYKKIISPLLPPACRFTPTCSEYAAQAFQECGFFQAIQLSAWRILRCNPLSQGFDDPLPPNTKG 74
PRK14390 PRK14390
hypothetical protein; Provisional
 9-69 1.14e-17

hypothetical protein; Provisional


Pssm-ID: 172866  Cd Length: 63  Bit Score: 70.42  E-value: 1.14e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446173797   9 IRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
Cdd:PRK14390   2 ISFYQKWFSPFFGPRCRFIPSCSSYGYEAITRHGPWKGGWLTLRRLSRCHPLTPCGCDPVP 62
PRK14377 PRK14377
membrane protein insertion efficiency factor YidD;
9-73 6.63e-15

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172853  Cd Length: 104  Bit Score: 64.79  E-value: 6.63e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446173797   9 IRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKAI 73
Cdd:PRK14377  14 VHLYRWAISPFLGAPCRFFPTCSEYALVALKKHPLRKSLFLIAKRLLKCGPWCIGGIDLVPRTSV 78
PRK14376 PRK14376
membrane protein insertion efficiency factor YidD;
9-72 6.43e-13

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237695  Cd Length: 176  Bit Score: 61.12  E-value: 6.43e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446173797   9 IRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKA 72
Cdd:PRK14376  49 VRLYRAGWSGRNAGCCRFEPSCSAYALTAVRRHGGVRGGLLAVRRLLRCQPLSAGGYDPVPGEA 112
PRK14384 PRK14384
hypothetical protein; Provisional
 24-72 3.89e-10

hypothetical protein; Provisional


Pssm-ID: 172860  Cd Length: 56  Bit Score: 51.21  E-value: 3.89e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446173797  24 CRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPKA 72
Cdd:PRK14384   4 CRFYPSCSCYAETALKRFGVIKGSGLTVWRLLRCHPFHPGGVDFVPEKS 52
PRK14385 PRK14385
membrane protein insertion efficiency factor YidD;
4-71 1.24e-08

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172861  Cd Length: 96  Bit Score: 48.28  E-value: 1.24e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446173797   4 ILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVPPK 71
Cdd:PRK14385  13 ILILLIKIYQNTLSKIVGFQCIYKPSCSNYALECLKKYNILTALILITLRIIRCNALFKGGNESLPTK 80
PRK14374 PRK14374
membrane protein insertion efficiency factor YidD;
1-65 8.77e-04

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237694  Cd Length: 118  Bit Score: 35.82  E-value: 8.77e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446173797   1 MVRILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPW--GGSGY 65
Cdd:PRK14374   9 LSAIFTASIRGYQRFFSAFTFSSCRFYPTCSNYALWLLCFENPLSAMGKIAIRILSCNPFcsGGIAY 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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