|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
7-258 |
1.99e-74 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 227.39 E-value: 1.99e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 7 ESKDNAKIKHLRGLIElNSARKKHQQTVLEGTHLCLAWLQQQKKLFSLFTTEQALE-HPDLKKIIELHQGHVFIISEVLY 85
Cdd:COG0566 2 TSPSNPRVKDLRKLRD-KKYREEEGLFLAEGRHAVEEALKAGREIEELLVTEGALDrLAELLALAKAAGIPVYEVSREVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 86 KDLSTLGNTLPCLAIIDLPKTASTIDYSVDT------LILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLR 159
Cdd:COG0566 81 DKLSGTETHQGVLAVVRPPEYADLEDLLAEAgeppllLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 160 AGMGAHFSLSCFENFQLTDILPKF---DIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPG 235
Cdd:COG0566 161 ASAGALFHVPVARVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACdELVRIPMAG 240
|
250 260
....*....|....*....|...
gi 446190491 236 GQESLNVAIAGSICFFEMVRQRQ 258
Cdd:COG0566 241 GVESLNVAVAAAILLYEAARQRR 263
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
117-253 |
9.24e-61 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 188.40 E-value: 9.24e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKF---DIPVFVTSSH 193
Cdd:cd18095 3 LVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELkeaGYKVVAADLD 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446190491 194 RSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFEM 253
Cdd:cd18095 83 GGSSLYDLDLPKPVALVLGNEGNGLSDELLELCdKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
116-251 |
7.01e-40 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 134.97 E-value: 7.01e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 116 TLILENVQDPGNVGTLLRSAAAANIKQIICT-QGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFD---IPVFVTS 191
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADGLILVePRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKeagYAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446190491 192 SHrSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFF 251
Cdd:pfam00588 83 LG-GKSLYEIDFPKKVALVFGNEGTGLSNEVLELCdRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
32-257 |
2.77e-25 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 99.73 E-value: 2.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 32 QTVLEGTHLCLAWLQQQKKLFSLftteQALEHPDLKKIIEL------------------------HQGHVFIISEVLYKD 87
Cdd:TIGR00186 1 QEYLYGKNAVLEALLNQQRVFIL----KGLESKRLKKLIQLakkqginiqlvdrqkldqltkggnHQGIAAKVKPILYKD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 88 LStlgntlpclaiiDLPKTASTIDYSVdTLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGA--H 165
Cdd:TIGR00186 77 LN------------DLYKTAKSKKQPF-LLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAveY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 166 FSLSCFENFQLT-DILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVA 243
Cdd:TIGR00186 144 VPLARVTNLSRTiTKLKESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCdFLIKIPMAGKVDSLNVS 223
|
250
....*....|....
gi 446190491 244 IAGSICFFEMVRQR 257
Cdd:TIGR00186 224 VAAGILLFEIKRQR 237
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
117-258 |
7.29e-17 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 78.67 E-value: 7.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQIIcTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKF---DIPVFVTSSH 193
Cdd:PRK10864 201 LALEDVGNPHNLGGIMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDSFVDVLDDFrqaGYTIVTTSSH 279
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446190491 194 RSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQ-SVTIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
Cdd:PRK10864 280 KGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDlSVSIDGTGNVESLNVSVATGVLLAEWWRQNK 345
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
7-258 |
1.99e-74 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 227.39 E-value: 1.99e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 7 ESKDNAKIKHLRGLIElNSARKKHQQTVLEGTHLCLAWLQQQKKLFSLFTTEQALE-HPDLKKIIELHQGHVFIISEVLY 85
Cdd:COG0566 2 TSPSNPRVKDLRKLRD-KKYREEEGLFLAEGRHAVEEALKAGREIEELLVTEGALDrLAELLALAKAAGIPVYEVSREVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 86 KDLSTLGNTLPCLAIIDLPKTASTIDYSVDT------LILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLR 159
Cdd:COG0566 81 DKLSGTETHQGVLAVVRPPEYADLEDLLAEAgeppllLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 160 AGMGAHFSLSCFENFQLTDILPKF---DIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPG 235
Cdd:COG0566 161 ASAGALFHVPVARVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACdELVRIPMAG 240
|
250 260
....*....|....*....|...
gi 446190491 236 GQESLNVAIAGSICFFEMVRQRQ 258
Cdd:COG0566 241 GVESLNVAVAAAILLYEAARQRR 263
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
117-253 |
9.24e-61 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 188.40 E-value: 9.24e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKF---DIPVFVTSSH 193
Cdd:cd18095 3 LVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELkeaGYKVVAADLD 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446190491 194 RSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFEM 253
Cdd:cd18095 83 GGSSLYDLDLPKPVALVLGNEGNGLSDELLELCdKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
116-251 |
7.01e-40 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 134.97 E-value: 7.01e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 116 TLILENVQDPGNVGTLLRSAAAANIKQIICT-QGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFD---IPVFVTS 191
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADGLILVePRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKeagYAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446190491 192 SHrSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFF 251
Cdd:pfam00588 83 LG-GKSLYEIDFPKKVALVFGNEGTGLSNEVLELCdRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
116-253 |
4.75e-38 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 130.45 E-value: 4.75e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDI---LPKfDIPVFVTSS 192
Cdd:cd18106 2 TVICDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPIYGNLSWDDIpnyLPD-DSKVFLADN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446190491 193 HRSTSLYSKDL--SKPCVWILGNEGQGASDYALEHAQS-----VTIPQPGGQESLNVAIAGSICFFEM 253
Cdd:cd18106 81 NLPVQPYDSIDycSGPIVLVIGGETHGVSPEAYKLAHStggsrVHIPLANGVDSLNSAVAASILLFEM 148
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
116-253 |
5.61e-35 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 122.26 E-value: 5.61e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILP-KFDIPVFVTSSHr 194
Cdd:cd18109 2 TLALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIHYTDLPALLAElKKAFPVYGADLD- 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446190491 195 STSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQ-ESLNVAIAGSICFFEM 253
Cdd:cd18109 81 GENLYEFTLPEKGILVMGNEGHGISPEVLKLLtHRLTIPRYGKGaESLNVAVATAILLSEF 141
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
117-257 |
1.91e-32 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 115.76 E-value: 1.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFE--NFQLTDILPKFDIPVFVTSSHR 194
Cdd:cd18104 3 LVLEGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASLGAVFTLPVAEasSEETLAWLKENKIRILATTPKA 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446190491 195 STSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFEMVRQR 257
Cdd:cd18104 83 EKLYYEADLRGPIAIVVGSESEGLSEFWLKAAdERVRIPMAGQADSLNVSVAAAILLYEALRQR 146
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
117-253 |
9.38e-29 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 106.31 E-value: 9.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQIICTQ-GSASLwSPRVLRAGMGAHFSLSCF--ENF-QLTDILPKFDIPVFVTSS 192
Cdd:cd18103 3 LILDGITDPHNLGAIIRSAEAFGVDGVIIPKrRSAPL-TPTVAKASAGALEHLPIArvTNLaRALEELKEAGFWIYGADG 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446190491 193 HRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFEM 253
Cdd:cd18103 82 EAEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCdFLVKIPMAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
116-252 |
3.14e-27 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 102.30 E-value: 3.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSL--SCFENF-QLTDILPKFDIPVFVTSS 192
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVpyERVDNFeEYLKSLKEEGYPLIGLEL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446190491 193 HR-STSLYSKDL--SKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFE 252
Cdd:cd18082 81 TDgSIPLSEFKFkkPKKIALIFGNERSGLSPELLALCdYTVHIPMSGKNSSLNVSVATGIALYE 144
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
32-257 |
2.77e-25 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 99.73 E-value: 2.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 32 QTVLEGTHLCLAWLQQQKKLFSLftteQALEHPDLKKIIEL------------------------HQGHVFIISEVLYKD 87
Cdd:TIGR00186 1 QEYLYGKNAVLEALLNQQRVFIL----KGLESKRLKKLIQLakkqginiqlvdrqkldqltkggnHQGIAAKVKPILYKD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 88 LStlgntlpclaiiDLPKTASTIDYSVdTLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGA--H 165
Cdd:TIGR00186 77 LN------------DLYKTAKSKKQPF-LLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAveY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 166 FSLSCFENFQLT-DILPKFDIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVA 243
Cdd:TIGR00186 144 VPLARVTNLSRTiTKLKESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCdFLIKIPMAGKVDSLNVS 223
|
250
....*....|....
gi 446190491 244 IAGSICFFEMVRQR 257
Cdd:TIGR00186 224 VAAGILLFEIKRQR 237
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
117-252 |
7.24e-23 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 90.91 E-value: 7.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSL-----SCFENFQ--LTDILPKFD-IPVF 188
Cdd:cd18107 3 VLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLpivrvPSNRELEdwVEARKARGTpLQLV 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446190491 189 VTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFE 252
Cdd:cd18107 83 GTDEHGDHQIADHDFTRPTLLLIGNETAGLSAAWRELCdETVSIPMAGSASSLNAACAASIFLYE 147
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
116-253 |
6.78e-20 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 83.00 E-value: 6.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 116 TLILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSC--FENfqLTDILPK-----FDIpVF 188
Cdd:cd18097 2 VVVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWehFED--TLEAVRAlkargYTI-IA 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446190491 189 VTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFFEM 253
Cdd:cd18097 79 LETTENSVPLHEARLPRPLALVLGNEVRGVSPEVLALCDAVVeIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
116-257 |
2.52e-19 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 82.13 E-value: 2.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 116 TLILENVQDPGNVGTLLRSAAAANIKQI-ICTQGSASLWSPRVLragMGAH--FSLSCFENF-QLTDILPKFDIPVFVTS 191
Cdd:cd18092 18 TVVLENVHDPHNASAVLRTCDAFGVQDVhVIEPKNKFKKNRGVA---MGADkwLDVHRHDSTeECLAALKEQGYRIVATS 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446190491 192 SH-RSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFEMVRQR 257
Cdd:cd18092 95 LSpDAVPLDELDYTRPTALVFGNEKDGVSEEALAAAdERVYIPMYGFVESLNVSVAAAIILYELQRQR 162
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
117-252 |
4.00e-17 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 75.71 E-value: 4.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQiICTQGSASlWSPrvlRAGMGA--HFSLSCFENFQ-LTDILPKFDIPVF-VTSS 192
Cdd:cd18096 3 LVLHNVAKRHNIGTIVRSANAFGVKE-VHLVGRRK-FNP---FGAMGTdrHVKFRHFDTLAeAKEYLKERGIRLVgVEIV 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446190491 193 HRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPG-GQESLNVAIAGSICFFE 252
Cdd:cd18096 78 PGAEPIETHPFPGDTAFVLGNEGTGLSDEQLAICdGFVYIPQYGsGTASLNVSVAASIVLHH 139
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
117-258 |
7.29e-17 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 78.67 E-value: 7.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQIIcTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKF---DIPVFVTSSH 193
Cdd:PRK10864 201 LALEDVGNPHNLGGIMRSCAHFGVKGVV-VQDAALLESGAAIRTAEGGAEHVQPITGDSFVDVLDDFrqaGYTIVTTSSH 279
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446190491 194 RSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQ-SVTIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
Cdd:PRK10864 280 KGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDlSVSIDGTGNVESLNVSVATGVLLAEWWRQNK 345
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
117-248 |
2.30e-16 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 74.09 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQII-CTQGSASLwSPRVLRAGMGAhfslscFENFQL--TDILPKF---------- 183
Cdd:cd18105 3 LLLDEITDPQNLGAILRSAYFLGVDGVVvSSKNSAPL-SPVVSKASAGA------LELMPIysVDNLASFlksskengwk 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446190491 184 ----DIPVFVTSSHR---STSLYSKDLSKPCVWILGNEGQGASDYALEHAQS-VTIPQPGGQE-----SLNVAIAGSI 248
Cdd:cd18105 76 vvgtSAPPSASSDKKtipANELSELLLEKPTILVLGNEGRGLRTNIKNLCDYlVSIPGGRSAEnpgvdSLNVSVAAGI 153
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
117-257 |
2.03e-15 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 73.46 E-value: 2.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 117 LILENVQDPGNVGTLLRSAAAANIKQIICTQG-SASLwSPRVLRAGMGAHfslscfEN---FQLTDI------LPKFDIP 186
Cdd:PRK11181 98 LILDGVTDPHNLGACLRSADAAGVHAVIVPKDrSAQL-NATAKKVACGAA------ETvplIRVTNLartmrmLQEKNIW 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446190491 187 VFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFEMVRQR 257
Cdd:PRK11181 171 IVGTAGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCdELISIPMAGSVSSLNVSVATGICLFEAVRQR 242
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
116-258 |
5.43e-10 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 57.69 E-value: 5.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 116 TLILENVQDPGNVGTLLRSAAAANIKQIictqgsASLWSPRVLR----AGMGAHFSLSCFENFQLTDILPKF---DIPVF 188
Cdd:PRK11081 21 TVCMEQVHKPHNVSAIIRTADAVGVHEV------HAVWPGSRMRtmgsTAAGSNSWVQVKTHRTIGDAVAHLkgqGMQIL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446190491 189 VTS-SHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFEMVRQRQ 258
Cdd:PRK11081 95 ATHlSDTAVDFREIDYTRPTCILMGQEKTGISQEALALAdQDIIIPMIGMVQSLNVSVASALILYEAQRQRQ 166
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
125-256 |
7.38e-09 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 53.23 E-value: 7.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 125 PGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMG--AHFSLSCFENFQltDILPKFDI-PVFVTSSHRSTSLYSK 201
Cdd:cd18094 10 PQNTGNIARTCAATGARLHLIEPLGFSLDDKRLKRAGLDywDHVDLTVHDSWE--AFLEALPPgRLFLFTTKGTKPYTDF 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 446190491 202 DLSKPCVWILGNEGQGASDYALEHA--QSVTIPQPGGQESLNVAIAGSICFFEMVRQ 256
Cdd:cd18094 88 DFKPGDYLVFGRESTGLPEEILDAFpdRRLRIPMRPKVRSLNLSNSVAIVLYEALRQ 144
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
119-248 |
9.91e-08 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 49.95 E-value: 9.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 119 LENVQDPGNVGTLLRSAAAANIKQIICTqgsaslwSPRVLRAGM-----GAHFSLSCFENFQLTDI---LPKFDIPVFVT 190
Cdd:cd18098 5 IENPKTPKNVGTLWRAAGCLGASFVFTI-------GARYKRRKQstdtsKAWRHIPLFHYDDLEDLaepLPFGAVLVAVE 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446190491 191 SSHRSTSLysKDLSKP--CVWILGNEGQGASDYALEHAQS-VTIPqpgGQESLNVAIAGSI 248
Cdd:cd18098 78 LTEGATPL--PDFKHPdrAVYLLGPEDGGLPQEVLARCHHvVYLP---TRGSLNVAVAGSI 133
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
187-252 |
1.97e-07 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 49.07 E-value: 1.97e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446190491 187 VFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGSICFFE 252
Cdd:cd18091 78 VGLEQTANSVSLHDFQFPKKTVLVLGNEKEGIPAELLSLLdVCVEIPQLGVIRSLNVHVSGAIAIYE 144
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
125-256 |
1.22e-04 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 41.17 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446190491 125 PGNVGTLLRSAAAANIKQIIctqgsaSLWSPRVLRAGM--GAHFSLSCFENFQltDILPKF-DIPVFVTSSHRSTSLYSK 201
Cdd:COG0219 12 PQNTGNIIRLCAATGARLHLieplgfSLDDKKLKRAGLdyWELVDLTVHDSWE--AFLEALpGGRLFLFTTKGTKPYTDV 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 446190491 202 DLSKPCVWILGNEGQGASDYALEHA--QSVTIPQPGGQESLNVAIAGSICFFEMVRQ 256
Cdd:COG0219 90 DYQPGDVLLFGRETAGLPEEVLAAPadQRLRIPMRPGVRSLNLSNAVAIVLYEALRQ 146
|
|
| |
