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Conserved domains on  [gi|446193458|ref|WP_000271313|]
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MULTISPECIES: DUF3870 domain-containing protein [Bacillus]

Protein Classification

DUF3870 domain-containing protein( domain architecture ID 10585677)

DUF3870 domain-containing protein may have a lytic function

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3870 pfam12986
Domain of unknown function (DUF3870); A family based on the C-terminal domain of 3KOG which ...
 8-99 1.15e-39

Domain of unknown function (DUF3870); A family based on the C-terminal domain of 3KOG which shows structural similarity to pore-forming proteins, suggesting it may have a lytic function.


:

Pssm-ID: 432920  Cd Length: 94  Bit Score: 127.28  E-value: 1.15e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446193458    8 YIVGDAKAPQNNPITEKFKSYFVAFILVKDTGEIVDADCSATIALTSQFVKYLFLHKNIND--PALVMEVKNRYFGSSQK 85
Cdd:pfam12986   1 YITGYAKTPSGNAITSLYGTFFIGLVVDKKTGEIVDADCTLTLELTRDFVRSLLVGKSLLEdiEEIEEEIRERYFGSSQK 80

                          90
                  ....*....|....
gi 446193458   86 ALLVALKDAQKKYN 99
Cdd:pfam12986  81 ALIAALKDALKKYR 94
 
Name Accession Description Interval E-value
DUF3870 pfam12986
Domain of unknown function (DUF3870); A family based on the C-terminal domain of 3KOG which ...
 8-99 1.15e-39

Domain of unknown function (DUF3870); A family based on the C-terminal domain of 3KOG which shows structural similarity to pore-forming proteins, suggesting it may have a lytic function.


Pssm-ID: 432920  Cd Length: 94  Bit Score: 127.28  E-value: 1.15e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446193458    8 YIVGDAKAPQNNPITEKFKSYFVAFILVKDTGEIVDADCSATIALTSQFVKYLFLHKNIND--PALVMEVKNRYFGSSQK 85
Cdd:pfam12986   1 YITGYAKTPSGNAITSLYGTFFIGLVVDKKTGEIVDADCTLTLELTRDFVRSLLVGKSLLEdiEEIEEEIRERYFGSSQK 80

                          90
                  ....*....|....
gi 446193458   86 ALLVALKDAQKKYN 99
Cdd:pfam12986  81 ALIAALKDALKKYR 94
 
Name Accession Description Interval E-value
DUF3870 pfam12986
Domain of unknown function (DUF3870); A family based on the C-terminal domain of 3KOG which ...
 8-99 1.15e-39

Domain of unknown function (DUF3870); A family based on the C-terminal domain of 3KOG which shows structural similarity to pore-forming proteins, suggesting it may have a lytic function.


Pssm-ID: 432920  Cd Length: 94  Bit Score: 127.28  E-value: 1.15e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446193458    8 YIVGDAKAPQNNPITEKFKSYFVAFILVKDTGEIVDADCSATIALTSQFVKYLFLHKNIND--PALVMEVKNRYFGSSQK 85
Cdd:pfam12986   1 YITGYAKTPSGNAITSLYGTFFIGLVVDKKTGEIVDADCTLTLELTRDFVRSLLVGKSLLEdiEEIEEEIRERYFGSSQK 80

                          90
                  ....*....|....
gi 446193458   86 ALLVALKDAQKKYN 99
Cdd:pfam12986  81 ALIAALKDALKKYR 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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