NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446193756|ref|WP_000271611|]
View 

MULTISPECIES: zinc ribbon domain-containing protein [Bacillus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RPL40A super family cl47290
Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 39-74 1.14e-03

Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L40E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


The actual alignment was detected with superfamily member COG1552:

Pssm-ID: 441161 [Multi-domain]  Cd Length: 50  Bit Score: 36.84  E-value: 1.14e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 446193756  39 KYCRTCGVESKETATYCEKCGDSLLVgITKKEMKTK 74
Cdd:COG1552   16 KICMRCGARNPIRATRCRKCGYKNLR-PKKKERRAK 50
 
Name Accession Description Interval E-value
RPL40A COG1552
Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 39-74 1.14e-03

Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L40E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441161 [Multi-domain]  Cd Length: 50  Bit Score: 36.84  E-value: 1.14e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 446193756  39 KYCRTCGVESKETATYCEKCGDSLLVgITKKEMKTK 74
Cdd:COG1552   16 KICMRCGARNPIRATRCRKCGYKNLR-PKKKERRAK 50
 
Name Accession Description Interval E-value
RPL40A COG1552
Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 39-74 1.14e-03

Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L40E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441161 [Multi-domain]  Cd Length: 50  Bit Score: 36.84  E-value: 1.14e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 446193756  39 KYCRTCGVESKETATYCEKCGDSLLVgITKKEMKTK 74
Cdd:COG1552   16 KICMRCGARNPIRATRCRKCGYKNLR-PKKKERRAK 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH