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Conserved domains on  [gi|446209255|ref|WP_000287110|]
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MULTISPECIES: GntP family permease [Salmonella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GntT super family cl29849
H+/gluconate symporter GntT or related permease, GntP/DsdX family [Carbohydrate transport and ...
 4-114 2.73e-10

H+/gluconate symporter GntT or related permease, GntP/DsdX family [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG2610:

Pssm-ID: 442022 [Multi-domain]  Cd Length: 440  Bit Score: 56.66  E-value: 2.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446209255   4 LLMLVAYRGYSVILFAPLVALGAVLFTRpvTVAPVFSDIFMDKLIGFVKLYFPVFLLGAVFGKLIEFAGFYYSIVSAVTC 83
Cdd:COG2610   14 LILLIIKFKLHPFLALLLAALLVGLLAG--MPLAKIVTSIMTGFGGTLGSIGLVIGLGAMLGKLLEDSGAAERIADTIIK 91

                         90       100       110
                 ....*....|....*....|....*....|...
gi 446209255  84 MVGQNKAMPMIILVCALLtygGVSLF--VVAFA 114
Cdd:COG2610   92 KFGEKRAPLALVLAGFIL---GIPVFfdVGFVI 121
 
Name Accession Description Interval E-value
GntT COG2610
H+/gluconate symporter GntT or related permease, GntP/DsdX family [Carbohydrate transport and ...
 4-114 2.73e-10

H+/gluconate symporter GntT or related permease, GntP/DsdX family [Carbohydrate transport and metabolism];


Pssm-ID: 442022 [Multi-domain]  Cd Length: 440  Bit Score: 56.66  E-value: 2.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446209255   4 LLMLVAYRGYSVILFAPLVALGAVLFTRpvTVAPVFSDIFMDKLIGFVKLYFPVFLLGAVFGKLIEFAGFYYSIVSAVTC 83
Cdd:COG2610   14 LILLIIKFKLHPFLALLLAALLVGLLAG--MPLAKIVTSIMTGFGGTLGSIGLVIGLGAMLGKLLEDSGAAERIADTIIK 91

                         90       100       110
                 ....*....|....*....|....*....|...
gi 446209255  84 MVGQNKAMPMIILVCALLtygGVSLF--VVAFA 114
Cdd:COG2610   92 KFGEKRAPLALVLAGFIL---GIPVFfdVGFVI 121
 
Name Accession Description Interval E-value
GntT COG2610
H+/gluconate symporter GntT or related permease, GntP/DsdX family [Carbohydrate transport and ...
 4-114 2.73e-10

H+/gluconate symporter GntT or related permease, GntP/DsdX family [Carbohydrate transport and metabolism];


Pssm-ID: 442022 [Multi-domain]  Cd Length: 440  Bit Score: 56.66  E-value: 2.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446209255   4 LLMLVAYRGYSVILFAPLVALGAVLFTRpvTVAPVFSDIFMDKLIGFVKLYFPVFLLGAVFGKLIEFAGFYYSIVSAVTC 83
Cdd:COG2610   14 LILLIIKFKLHPFLALLLAALLVGLLAG--MPLAKIVTSIMTGFGGTLGSIGLVIGLGAMLGKLLEDSGAAERIADTIIK 91

                         90       100       110
                 ....*....|....*....|....*....|...
gi 446209255  84 MVGQNKAMPMIILVCALLtygGVSLF--VVAFA 114
Cdd:COG2610   92 KFGEKRAPLALVLAGFIL---GIPVFfdVGFVI 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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