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Conserved domains on  [gi|446212979|ref|WP_000290834|]
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MULTISPECIES: single-stranded DNA-binding protein [Bacteria]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 10793852)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-175 5.64e-118

single-stranded DNA-binding protein; Provisional


:

Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 330.93  E-value: 5.64e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK13732   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQVQPQPQQNGQSQSADATKKGSAKTKGRGRKAAQPEPQPQ 160
Cdd:PRK13732  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQQNAQPQPGPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQPQ 160

                        170
                 ....*....|....*
gi 446212979 161 PPEGEDYGFSDDIPF 175
Cdd:PRK13732 161 PPEGEDYGFSDDIPF 175
 
Name Accession Description Interval E-value
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-175 5.64e-118

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 330.93  E-value: 5.64e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK13732   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQVQPQPQQNGQSQSADATKKGSAKTKGRGRKAAQPEPQPQ 160
Cdd:PRK13732  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQQNAQPQPGPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQPQ 160

                        170
                 ....*....|....*
gi 446212979 161 PPEGEDYGFSDDIPF 175
Cdd:PRK13732 161 PPEGEDYGFSDDIPF 175
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 4-175 2.46e-59

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 182.23  E-value: 2.46e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979    4 RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQtGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQ 83
Cdd:TIGR00621   2 RMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD-GEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   84 LRTRSWED-NGITRYVTEILVKTTGTMQMLGsAPQQNAQVQPQPQQNGQSQSADAtkkGSAKTKGRGRKAaqpepQPQPP 162
Cdd:TIGR00621  81 LRTRKWEDqNGQKRSKTEIIADNVQLLDLLG-ARAQGGEFSGGGGSGNRPQGGQE---QSATGKDPAQSA-----PQSGS 151

                         170
                  ....*....|...
gi 446212979  163 EGEDYGFSDDIPF 175
Cdd:TIGR00621 152 ADPIDGDDDEIPF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-121 4.38e-54

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 166.94  E-value: 4.38e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDkQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKD-QDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446212979  86 TRSWED-NGITRYVTEILVKttgTMQMLGSAPQQNAQ 121
Cdd:COG0629   80 TRSWEDkDGQKRYTTEVVAD---EIQFLGSRPSGGGG 113
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 6-112 4.62e-44

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 141.22  E-value: 4.62e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979    6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEmkEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGD--EETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQ 78

                          90       100
                  ....*....|....*....|....*...
gi 446212979   86 TRSWED-NGITRYVTEILVKttgTMQML 112
Cdd:pfam00436  79 TRKYEDqEGQKRYVTEIVAD---EVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 9-103 4.44e-39

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 128.50  E-value: 4.44e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   9 VILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKqtGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88
Cdd:cd04496    1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDR--DEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRS 78

                         90
                 ....*....|....*.
gi 446212979  89 WED-NGITRYVTEILV 103
Cdd:cd04496   79 WEDkDGQKRYGTEVVA 94
 
Name Accession Description Interval E-value
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-175 5.64e-118

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 330.93  E-value: 5.64e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK13732   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQVQPQPQQNGQSQSADATKKGSAKTKGRGRKAAQPEPQPQ 160
Cdd:PRK13732  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAPQQNAQPQPGPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQPQ 160

                        170
                 ....*....|....*
gi 446212979 161 PPEGEDYGFSDDIPF 175
Cdd:PRK13732 161 PPEGEDYGFSDDIPF 175
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 1-175 4.42e-73

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 217.41  E-value: 4.42e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   1 MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK09010   1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  81 EGQLRTRSWED-NGITRYVTEILVKTTGTMQMLGSAPQQNAQVQ---PQPQQNGQSQSADATKKGSAKTKGRGRKAAQPE 156
Cdd:PRK09010  81 EGQLRTRKWTDqSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGgniGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAP 160

                        170
                 ....*....|....*....
gi 446212979 157 PQPQPPEGEDygFSDDIPF 175
Cdd:PRK09010 161 AAPSNEPPMD--FDDDIPF 177
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 1-175 1.52e-68

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 205.93  E-value: 1.52e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   1 MAvRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYI 80
Cdd:PRK05733   1 MA-RGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  81 EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGSAPQQNAQvqpQPQQNGQSQSADATKKGSAKTKGRGRKAAQPEPQPQ 160
Cdd:PRK05733  80 EGKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDDQ---GGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPA 156

                        170
                 ....*....|....*.
gi 446212979 161 PPEGEDY-GFSDDIPF 175
Cdd:PRK05733 157 PQPAADFdSFDDDIPF 172
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 5-175 1.53e-59

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 182.86  E-value: 1.53e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQL 84
Cdd:PRK06863   3 GINKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  85 RTRSWED-NGITRYVTEIlvkTTGTMQMLGSAPQQNA----QVQPQPQQNGQSQSADATKKGSAKtkgrgrKAAQPEPQP 159
Cdd:PRK06863  83 KTRKWQDqNGQDRYTTEI---QGDVLQMLGGRNQRNAggygNSGPAPQQSYQAGQTNNGNSQQAS------RPAPQQAAP 153

                        170
                 ....*....|....*.
gi 446212979 160 QPPEGEDyGFSDDIPF 175
Cdd:PRK06863 154 QAEPPMD-GFDDDIPF 168
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 4-175 2.46e-59

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 182.23  E-value: 2.46e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979    4 RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQtGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQ 83
Cdd:TIGR00621   2 RMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD-GEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   84 LRTRSWED-NGITRYVTEILVKTTGTMQMLGsAPQQNAQVQPQPQQNGQSQSADAtkkGSAKTKGRGRKAaqpepQPQPP 162
Cdd:TIGR00621  81 LRTRKWEDqNGQKRSKTEIIADNVQLLDLLG-ARAQGGEFSGGGGSGNRPQGGQE---QSATGKDPAQSA-----PQSGS 151

                         170
                  ....*....|...
gi 446212979  163 EGEDYGFSDDIPF 175
Cdd:TIGR00621 152 ADPIDGDDDEIPF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
6-121 4.38e-54

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 166.94  E-value: 4.38e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDkQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKD-QDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446212979  86 TRSWED-NGITRYVTEILVKttgTMQMLGSAPQQNAQ 121
Cdd:COG0629   80 TRSWEDkDGQKRYTTEVVAD---EIQFLGSRPSGGGG 113
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 6-114 4.28e-48

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 154.18  E-value: 4.28e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:PRK06958   4 VNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIR 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 446212979  86 TRSWED-NGITRYVTEILVKttgTMQMLGS 114
Cdd:PRK06958  84 TRKWQGqDGQDRYSTEIVAD---QMQMLGG 110
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 6-112 4.62e-44

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 141.22  E-value: 4.62e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979    6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEmkEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRGEGD--EETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQ 78

                          90       100
                  ....*....|....*....|....*...
gi 446212979   86 TRSWED-NGITRYVTEILVKttgTMQML 112
Cdd:pfam00436  79 TRKYEDqEGQKRYVTEIVAD---EVQFL 103
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 6-113 7.06e-43

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 140.32  E-value: 7.06e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGK-LAEVAGEYLRKGAQVYIEGQL 84
Cdd:PRK06341   5 VNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHRVVIFNEgLCKVAEQYLKKGAKVYIEGQL 84

                         90       100       110
                 ....*....|....*....|....*....|.
gi 446212979  85 RTRSWED-NGITRYVTEILVKT-TGTMQMLG 113
Cdd:PRK06341  85 QTRKWTDqSGVERYSTEVVLQGfNSTLTMLD 115
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 9-103 4.44e-39

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 128.50  E-value: 4.44e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   9 VILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKqtGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88
Cdd:cd04496    1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDR--DEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRS 78

                         90
                 ....*....|....*.
gi 446212979  89 WED-NGITRYVTEILV 103
Cdd:cd04496   79 WEDkDGQKRYGTEVVA 94
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 6-123 2.78e-37

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 125.99  E-value: 2.78e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGEMKEQTEWHRVVLFGK-LAEVAGEYLRKGAQVYIEGQL 84
Cdd:PRK06642   5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEgLVSVVERYVTKGSKLYIEGSL 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 446212979  85 RTRSWEDN-GITRYVTEILVKTTGTMQMLGSAPQQNAQVQ 123
Cdd:PRK06642  85 QTRKWNDNsGQEKYTTEVVLQNFNSQLILLDSKNSNNHNQ 124
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 4-137 3.47e-37

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 125.82  E-value: 3.47e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   4 RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQtGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQ 83
Cdd:PRK08763   3 RGINKVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDRE-GNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGS 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446212979  84 LRTRSWEDN-GITRYVTEILVKttgTMQMLGS------------------APQQNAQVQPQPQQNGQSQSADA 137
Cdd:PRK08763  82 IRYDKFTGQdGQERYVTEIVAD---EMQMLGGrgeggggggggirpqrqpAPRQNNGQDYAPRRQQPAPQQSA 151
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 7-134 4.00e-31

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 111.09  E-value: 4.00e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRdKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRT 86
Cdd:PRK08486   3 NKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFK-KQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTF 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 446212979  87 RSWED-NGITRYVTEILVKttgTMQMLGSAPQQNAQVQPQPQQNGQSQS 134
Cdd:PRK08486  82 ESWMDqNGQKRSKHTITAE---SMQMLDSKSDNPQANAMQDNSFHENFN 127
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 7-117 2.78e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 81.34  E-value: 2.78e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDkQTGEmkEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRT 86
Cdd:PRK07274   3 NKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKN-QNGE--READFINVVLWGKLAETLASYASKGSLISIDGELRT 79

                         90       100       110
                 ....*....|....*....|....*....|.
gi 446212979  87 RSWEDNGITRYVTEILVKttgTMQMLGSAPQ 117
Cdd:PRK07274  80 RKYEKDGQTHYVTEVLCQ---SFQLLESRAQ 107
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 5-124 3.09e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 80.89  E-value: 3.09e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDkqtgemkEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQL 84
Cdd:PRK07459   2 SLNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRD-------DEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSL 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 446212979  85 RTRSWED--NGITRYVTEILVKttgTMQMLGSA--PQQNAQVQP 124
Cdd:PRK07459  75 KFDRWTDrnTGEDRSKPVIRVD---RLELLGSKrdSEGNANPSN 115
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 6-130 9.65e-19

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 78.69  E-value: 9.65e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQtGEmkEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:PRK06751   2 MNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQ-GE--READFINCVIWRKQAENVANYLKKGSLAGVDGRLQ 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 446212979  86 TRSWE-DNGITRYVTEILVKTTGTMQMLGSAPQQNAQVQPQPQQNG 130
Cdd:PRK06751  79 TRNYEgQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAG 124
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 6-138 2.66e-16

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 71.84  E-value: 2.66e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDkQTGEmkEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:PRK07275   2 INNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKS-QNGE--READFINCVIWRQQAENLANWAKKGALIGVTGRIQ 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446212979  86 TRSWEDNGITR-YVTEILVKttgTMQML--------GSAPQQNAQVQPQPQQNGQSQSADAT 138
Cdd:PRK07275  79 TRNYENQQGQRvYVTEVVAD---NFQMLesratregGSGGSYNGGFNNAPSANSYSAPAQQT 137
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 6-105 5.00e-15

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 67.37  E-value: 5.00e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDkQTGEmkEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85
Cdd:PRK06752   2 MNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRN-SLGE--QQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIH 78

                         90       100
                 ....*....|....*....|.
gi 446212979  86 TRSWEDNGITR-YVTEILVKT 105
Cdd:PRK06752  79 TRNYEDDQGKRiYITEVVIES 99
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 11-131 1.91e-14

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 67.75  E-value: 1.91e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  11 LVGRLGKDPEVRYIPNGGAVANLQVA-TSETWrDKQTGEMKE-QTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88
Cdd:PRK07772   9 VVGNLTADPELRFTPSGAAVANFTVAsTPRTF-DRQTNEWKDgEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQRS 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 446212979  89 WED-NGITRYVTEILVKTTGTmqMLGSAPqqnAQVQPQPQQNGQ 131
Cdd:PRK07772  88 YETrEGEKRTVVELEVDEIGP--SLRYAT---AKVTRASRGGGG 126
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 9-175 2.13e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 56.45  E-value: 2.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979   9 VILVGRLGKDPEVRYIPNGGAVANLQVATsetwrdKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRS 88
Cdd:PRK06293   4 GYIVGRLGADPEERMTSKGKRVVVLRLGV------KSRVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPES 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  89 WED-NGITRYVTEIlvkTTGTMQMLGSAPQQNAQvQPQPQQNGQSQSADATKKGSAKTKGRGRKAAQPEPQPQPPEGEDY 167
Cdd:PRK06293  78 YVDkDGSPQSSLVV---SVDTIKFSPFGRNEGSR-QPSAGEDEGQQRGYDNVSIGFEGESLDTESALDKDMYAGYGQDQQ 153


                 ....*...
gi 446212979 168 GFSDDIPF 175
Cdd:PRK06293 154 YASEDVPF 161
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
 13-140 3.91e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 169261  Cd Length: 148  Bit Score: 46.98  E-value: 3.91e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446212979  13 GRLGKDPEVRYIPNGG----AVANLQVATSETWRDKQtGEMKEQTE-WHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTR 87
Cdd:PRK08182   9 GNIGSAPEYREFPNGNdeprRLLRLNVYFDNPVPTKD-GEYEDRGGfWAPVELWHRDAEHWARLYQKGMRVLVEGRMERD 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446212979  88 SWEDNGITRYVT--------EILVKTTGTMQMLGSAPQQNAQVQPQPQQNGQSQSADATKK 140
Cdd:PRK08182  88 EWTDNEDNERVTfkvearrvGILPYRIESVTLSPKPAATEPEAEPKPQAAQESTAPKEPKR 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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