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Conserved domains on  [gi|446260331|ref|WP_000338186|]
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MULTISPECIES: DUF739 family protein [Staphylococcus]

Protein Classification

helix-turn-helix domain-containing protein; LacI family DNA-binding transcriptional regulator( domain architecture ID 10526394)

helix-turn-helix (HTH) domain-containing protein with an XRE (Xenobiotic Response Element) family; HTH domain binds DNA and may function as a transcriptional regulator| LacI family DNA-binding transcriptional regulator functions as an activator or repressor by binding a specific effector ligand that either decreases (induction) or increases DNA-binding affinity (co-repression)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF739 pfam05339
Protein of unknown function (DUF739); This family contains several bacteriophage proteins. ...
 1-68 1.50e-40

Protein of unknown function (DUF739); This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.


:

Pssm-ID: 428429  Cd Length: 68  Bit Score: 127.26  E-value: 1.50e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446260331   1 MCYDYSRLSGKIVEKYGTQYNFAIAMKLSERSLSLKLNGKVGWKDSEIWKAIQLLDIPVEKIHLYFFK 68
Cdd:pfam05339  1 MSYDYSSLLGKITEKYGTQYNFAIAMGLSERSLSLKLNDKVTWKDDEILKAVHLLDLNPQKIPKYFFN 68
 
Name Accession Description Interval E-value
DUF739 pfam05339
Protein of unknown function (DUF739); This family contains several bacteriophage proteins. ...
 1-68 1.50e-40

Protein of unknown function (DUF739); This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.


Pssm-ID: 428429  Cd Length: 68  Bit Score: 127.26  E-value: 1.50e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446260331   1 MCYDYSRLSGKIVEKYGTQYNFAIAMKLSERSLSLKLNGKVGWKDSEIWKAIQLLDIPVEKIHLYFFK 68
Cdd:pfam05339  1 MSYDYSSLLGKITEKYGTQYNFAIAMGLSERSLSLKLNDKVTWKDDEILKAVHLLDLNPQKIPKYFFN 68
 
Name Accession Description Interval E-value
DUF739 pfam05339
Protein of unknown function (DUF739); This family contains several bacteriophage proteins. ...
 1-68 1.50e-40

Protein of unknown function (DUF739); This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.


Pssm-ID: 428429  Cd Length: 68  Bit Score: 127.26  E-value: 1.50e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446260331   1 MCYDYSRLSGKIVEKYGTQYNFAIAMKLSERSLSLKLNGKVGWKDSEIWKAIQLLDIPVEKIHLYFFK 68
Cdd:pfam05339  1 MSYDYSSLLGKITEKYGTQYNFAIAMGLSERSLSLKLNDKVTWKDDEILKAVHLLDLNPQKIPKYFFN 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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