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Conserved domains on  [gi|446271423|ref|WP_000349278|]
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MULTISPECIES: flagellar basal body rod protein FlgF [Salmonella]

Protein Classification

flagellar basal body rod protein FlgF( domain architecture ID 11486070)

flagellar basal body rod protein FlgF is a component of the proximal portion of the basal body central rod of flagellar organelles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 1.39e-144

flagellar basal body rod protein FlgF; Reviewed


:

Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 404.24  E-value: 1.39e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  81 ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVG 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 160 RLKLVKAEGNEVQRSDDGLFRLTaeaqaeRGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDE 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTT------DGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                        250
                 ....*....|..
gi 446271423 240 NEGRANQLLSMS 251
Cdd:PRK12640 235 NAQAANQLLRMS 246
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 1.39e-144

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 404.24  E-value: 1.39e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  81 ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVG 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 160 RLKLVKAEGNEVQRSDDGLFRLTaeaqaeRGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDE 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTT------DGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                        250
                 ....*....|..
gi 446271423 240 NEGRANQLLSMS 251
Cdd:PRK12640 235 NAQAANQLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 9.96e-144

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 402.20  E-value: 9.96e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  81 ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVG 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 160 RLKLVKAEGNEVQRSDDGLFRLTAeaqaerGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDE 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                        250
                 ....*....|..
gi 446271423 240 NEGRANQLLSMS 251
Cdd:COG4787  235 NDQAANQLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-230 3.42e-63

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 197.47  E-value: 3.42e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423    4 AIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLS--LATRTLVTASTPGADMTPGQLDYTSRPLDVA 81
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSgsGQVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   82 LQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGE-GGPITVPE-GSEITIAADGTISALNPGDppnTVAPV 158
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLDWgGGPITLPPdAGSVSIGEDGTVSATYSNG---QTVEL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446271423  159 GRLKLVK-AEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQ 230
Cdd:TIGR03506 159 GQIALANfPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-247 1.86e-20

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 82.31  E-value: 1.86e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446271423  169 NEVQRSDDGLFRLTAEAqaergAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDENEGRANQL 247
Cdd:pfam06429   1 AGLEKGGDNLFRETDGA-----PILGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 1.39e-144

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 404.24  E-value: 1.39e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  81 ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVG 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 160 RLKLVKAEGNEVQRSDDGLFRLTaeaqaeRGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDE 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTT------DGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                        250
                 ....*....|..
gi 446271423 240 NEGRANQLLSMS 251
Cdd:PRK12640 235 NAQAANQLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 9.96e-144

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 402.20  E-value: 9.96e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  81 ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVG 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 160 RLKLVKAEGNEVQRSDDGLFRLTAeaqaerGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDE 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                        250
                 ....*....|..
gi 446271423 240 NEGRANQLLSMS 251
Cdd:COG4787  235 NDQAANQLLRLS 246
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-211 5.67e-88

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 259.78  E-value: 5.67e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV 80
Cdd:PRK12643   1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  81 ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLTIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGR 160
Cdd:PRK12643  81 ALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTVQGYPLMGDNGPIDVPPQAAVTIAADGTISALNAGDSPNTIAQLGQ 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446271423 161 LKLVKAEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRimSGVLEGSNV 211
Cdd:PRK12643 161 IKRVQATAGEMMHGDDGLFHLTPETQQARGAQLPNDPLVK--PGEREHQWL 209
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-230 3.42e-63

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 197.47  E-value: 3.42e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423    4 AIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLS--LATRTLVTASTPGADMTPGQLDYTSRPLDVA 81
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSgsGQVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   82 LQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGE-GGPITVPE-GSEITIAADGTISALNPGDppnTVAPV 158
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLDWgGGPITLPPdAGSVSIGEDGTVSATYSNG---QTVEL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446271423  159 GRLKLVK-AEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQ 230
Cdd:TIGR03506 159 GQIALANfPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-251 2.43e-61

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 193.24  E-value: 2.43e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLN-ALRAVPVDGLSLATRTLVTASTpgaDMTPGQLDYTSRPLD 79
Cdd:PRK12641   1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFIlAIQNHNVKNLYNSDKKITKEYY---NLSPGTLRYTGRNLD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  80 VALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLTIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVG 159
Cdd:PRK12641  78 LFIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKLTVQNNEVIGNNGNIIIPKNINLKISSNGVITSIKNNHKHIVETKIG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 160 RLKLVKAEGNEVQRSDDGLFRL--TAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSV 237
Cdd:PRK12641 158 SLKLVQLPSQDLIQKENGLFYLkkNNEINKKHTKNIKHSSKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKIISMC 237

                        250
                 ....*....|....
gi 446271423 238 DENEGRANQLLSMS 251
Cdd:PRK12641 238 DQNTEYANQLININ 251
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-249 1.98e-57

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 183.48  E-value: 1.98e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   5 IYTA-MGAASQTLNQQaVTASNLANASTPGFRAQ-----------------LNALRAVPVDGLSLATRTLVTASTPgaDM 66
Cdd:COG4786    1 LYTAaSGMLAQQTRLD-VISNNLANVNTTGFKRDravfedllyqlirrpgaPSSQGTQTPVGLQLGTGVRVAATQT--DF 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  67 TPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEGGPITVPEG-SEITIAADGTIS 144
Cdd:COG4786   78 TQGSLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLvTSDGYPVLPENGPITIPEDaTSITISEDGTVS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 145 ALNPGDPPNTVapvGRLKLVKAEGNE-VQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIAN 223
Cdd:COG4786  158 VTLADGDGQQV---GQLGLVDFANPAgLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEA 234

                        250       260
                 ....*....|....*....|....*.
gi 446271423 224 ARRFEMQMKVITSVDENEGRANQLLS 249
Cdd:COG4786  235 QRAYEANSKVIQTADEMLGKANNLRG 260
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 4-248 2.46e-34

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 124.00  E-value: 2.46e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423    4 AIYTA-MGAASQTLNQQaVTASNLANASTPGF---RAQLNAL----------------RAVPVdGLSLATRTLVTASTpg 63
Cdd:TIGR02488   1 ALWTAaTGMNAQQTNMD-VISNNLANVNTTGFkkdRAEFEDLlyqterqpgaqsseqqTILPV-GVQVGLGVRVVATQ-- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   64 ADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEggpITVPEG-SEITIAADG 141
Cdd:TIGR02488  77 KLFTQGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLvTSNGYPLQPE---ITIPENaTSITVGSDG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  142 TISALNPGDP-PNTVAPVGRLKLVKAEGneVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDM 220
Cdd:TIGR02488 154 EVSVRQGGQTePQEVGQITLATFINPAG--LEAVGENLFRETPASGPPQIGTPGLDGFGKLRQGFLEASNVNVVQEMVDM 231

                         250       260
                  ....*....|....*....|....*...
gi 446271423  221 IANARRFEMQMKVITSVDENEGRANQLL 248
Cdd:TIGR02488 232 ITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgF PRK12689
flagellar basal-body rod protein FlgF;
18-249 2.21e-33

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 121.39  E-value: 2.21e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  18 QQAVTASNLANASTPGFRAQLNALRA--VPV---DGLSLATRTLVTASTPGA--DMTPGQLDYTSRPLDVALQQDGWLVV 90
Cdd:PRK12689  18 QLDVVANNVANVNTNGFKARSSLFQEylMPGaheDNFQRPDRRVSYVQDRGTplDLSQGPLEQTKNPLDVAIDGDAFLAV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  91 QAADGaEGYTRNGNIQVGPTGQL-TIQGHPVIGEGGPITV-PEGSEITIAADGTISALNPGDPPNTVApvGRLKLVK-AE 167
Cdd:PRK12689  98 QTPQG-ERYTRDGALEINAQGQLvTSDGYPVLGTGGPITFqPTDTGIAISPDGTVSVNEGTATTDSIR--GKLRLVTfAN 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 168 GNEVQRSDDGLFrltaeaqAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDENEGRANQL 247
Cdd:PRK12689 175 PQALKKEGANLY-------AATAPARPADTKARVEQGYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTAIER 247


                 ..
gi 446271423 248 LS 249
Cdd:PRK12689 248 LA 249
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-248 7.28e-33

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 119.97  E-value: 7.28e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTA-MGAASQTLNQqAVTASNLANASTPGFRAQlnalRAVPVD---------------------GLSLATRTLVT 58
Cdd:PRK12693   1 MIRALWIAkTGLDAQQTNI-DVISNNLANVNTTGFKKS----RAVFEDllyqtirqpgaqssqnttlpsGLQVGTGVRPV 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  59 ASTpgADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEggpITVPEGSE-IT 136
Cdd:PRK12693  76 ATQ--KIFTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLvTSGGYPLQPE---ITIPENATsIT 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 137 IAADGTISALNPGDPPNTVapVGRLKLV--------KAEGnevqrsdDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEG 208
Cdd:PRK12693 151 IGTDGTVSVTQAGQAAPQV--VGQITLTdfinpaglESIG-------ENLYLETAASGAPIEGTPGLNGLGTLRQGFLET 221

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 446271423 209 SNVKPVEAMTDMIANARRFEMQMKVITSVDENEGRANQLL 248
Cdd:PRK12693 222 SNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261
flgF PRK12690
flagellar hook-basal body complex protein;
1-239 9.50e-31

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 114.01  E-value: 9.50e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQ----LNALRAVPVDGLSLATRTLVTASTpgaDMTPGQLDYTSR 76
Cdd:PRK12690   1 MDNAGYTTLTRQSGLMREMQVVANNIANASTTGFRREglvfSEYVKSLDSGEASLSMARASGRQT---DLEQGGLTQTGG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  77 PLDVALQQDGWLVVQAADGaEGYTRNGNIQVGPTGQL-TIQGHPVIGEGG-PITVPEGSE-ITIAADGTISAlnPGDppn 153
Cdd:PRK12690  78 QFDFAIEGEGFFMVETPQG-ERLTRAGSFTPNAEGELvDPDGNRLLDAGGaPIFIPPDARsVAVGADGTLSA--DGQ--- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 154 tvaPVGRLKLVKAEGN-EVQRSDDGLFRLTAEAQAERGAvlaadpsiRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMK 232
Cdd:PRK12690 152 ---PLGQIGLYQPTDPlGLRREGGTRFRAEGGVEPAEGA--------RLLQGFLEGSNVNPVSEIARMIEVQRAYELGQS 220


                 ....*..
gi 446271423 233 VITSVDE 239
Cdd:PRK12690 221 FLDREDE 227
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-228 9.79e-28

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 106.29  E-value: 9.79e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVpvdgLSLATRTLVTASTPGADMT---PGQLDYTSRP 77
Cdd:PRK12642   1 MQSGLYVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTV----VSDTASKKVAFVSQGKSYLsteAGPLTKTGNP 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  78 LDVALQQDGWLVVQAADGAeGYTRNGNIQVGPTGQL-TIQGHPVIGEGG-PITV-PEGSEITIAADGTISAlnpgdppNT 154
Cdd:PRK12642  77 LDFAVKGDAWFSFDTPAGQ-VYTRDGRFTMTSTGELvSVTGYPVLDAGGaPIQLnPGGGEPTIGADGAIYQ-------NG 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 155 VaPVGRLklvkaegnevqrsddGLFRLTAEAQAER---GAVLAADP--------SIRIMSGVLEGSNVKPVEAMTDMIAN 223
Cdd:PRK12642 149 V-QVGAI---------------GLFEIDADAGLLRygnSGVIPDKPpqpvvdrnSVGVVQGYLEGSNVNAMTEMTQLISV 212


                 ....*
gi 446271423 224 ARRFE 228
Cdd:PRK12642 213 SRAFE 217
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 1-239 9.27e-25

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 98.67  E-value: 9.27e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQlnalRAVPVDglsLATRTLVTASTPGAD--------------- 65
Cdd:PRK12636   1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFKKS----RVTFKD---MVSQTISGASGPTANrggvnskqvglgsql 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  66 ------MTPGQLDYTSRPLDVALQQDGWLVVQAADGAEgYTRNGNIQVGPTGQL-TIQGHPVIGE-GGPITVPEGSE-IT 136
Cdd:PRK12636  74 gaidtiHTQGSLQTTGRPLDLAISGDGFFRVGDGDNTA-YTRAGNFYLDNEGNIvNADGLYLLGMnGGRIQIPTDAQsFS 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 137 IAADGTISALnpgDPPNTVAPVGRLKLVKAEGNE-VQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVE 215
Cdd:PRK12636 153 IGADGTVSYV---DAGGELQTAGQIGLATFANPDgLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSGALEMSNVDLAE 229

                        250       260
                 ....*....|....*....|....
gi 446271423 216 AMTDMIANARRFEMQMKVITSVDE 239
Cdd:PRK12636 230 EFTEMIVAQRGFQANTRIITTSDE 253
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 7-247 2.67e-24

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 97.45  E-value: 2.67e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   7 TAMGAASQTLNqqaVTASNLANASTPGFRAQ-----------LNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTS 75
Cdd:PRK12817  10 SGMNAQQEKLD---SISNNLANVNTTGYKREdvsfsdlvyetLDRKGYPTNDKPEIITGTGVKATNWIRDNQQGNLLTTG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  76 RPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLT--------IQGHPVIGEGGPITVPEGSEITIAADGTISALN 147
Cdd:PRK12817  87 NKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVddngnrleIQLEAGVGINNRNTGFDSNNFTVDEDGGISVKN 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 148 PGdppNTVAPVGRLKLVKAEGNEVQRS-DDGLFrltaeaQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARR 226
Cdd:PRK12817 167 VD---GQNKKVGKINIYNAVGNDAFISiGDNLY------VPSDGVQVFLNNDVDILQGYLENSNVDLGKEMTDMIITQRA 237

                        250       260
                 ....*....|....*....|.
gi 446271423 227 FEMQMKVITSVDENEGRANQL 247
Cdd:PRK12817 238 FQLSSKGIKTADEMWGIINNM 258
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-244 1.92e-22

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 92.45  E-value: 1.92e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAqlNALRAVPVDGLSLAT----------RTLVTASTPGADM---- 66
Cdd:PRK12818   1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKS--DNLAFKSFEDVLIENydkkvgnknvKNIIGGLSMGSKIdevn 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  67 ---TPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEG------GPITVPEGsEIT 136
Cdd:PRK12818  79 tlfTQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLvNDSGYYVLGRNnatgarEPINVGNG-KFS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 137 IAADGTISalnpgdppntVAPVGRLKLVKAEGNE---VQRSDDGLFRLTaeaqaerGAVLAADPSIRimSGVLEGSNVKP 213
Cdd:PRK12818 158 TDADGNIS----------LDGNASYKFNVADFNDynsLKKIGDNLYTGN-------NPQNINGAIVR--QNSLEKSNVNV 218

                        250       260       270
                 ....*....|....*....|....*....|.
gi 446271423 214 VEAMTDMIANARRFEMQMKVITSVDENEGRA 244
Cdd:PRK12818 219 TNEMVNMMTTMRSFETNQKIVQSIDETLGKA 249
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 127-228 5.54e-22

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 86.53  E-value: 5.54e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  127 ITVPEGSEITIAADGTISAlnpgdppNTVaPVGRLKLVKAEG-NEVQRSDDGLFRLTAeaqaerGAVLAADPSIRIMSGV 205
Cdd:TIGR02490   1 IVLPPDGDITIGADGTISQ-------DGE-EVGRLGLVNFDNpNQLQREGDGLFRATG------GGPAPADSNVRVVQGY 66

                          90       100
                  ....*....|....*....|...
gi 446271423  206 LEGSNVKPVEAMTDMIANARRFE 228
Cdd:TIGR02490  67 LEGSNVNAVSEMVDMIEAQRAYE 89
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-247 1.43e-21

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 90.25  E-value: 1.43e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   1 MDHAIYTAmgaASQTLNQQA---VTASNLANASTPGFRAQlnalRAvpvDGLSLATRTLVTASTPGADMT---------- 67
Cdd:PRK12816   1 MMRSLWTA---ASGMNAQQFnidTIANNLANVNTTGFKKI----RA---EFEDLIYQTQRRAGTPATEDTvtplgvqvgh 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  68 ------------PGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEggpITVPEGSE 134
Cdd:PRK12816  71 gvkvaatqrlfeQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLvTSNGYRLLPE---IIFPENYI 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 135 ---ITIAADGTISA-LNPGDPPNTVAPVGRLKLVKAEGneVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSN 210
Cdd:PRK12816 148 lnsITISEEGIVSVkVGEDNDPIELGQIELYRFVNPAG--LSAIGKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEMSN 225

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 446271423 211 VKPVEAMTDMIANARRFEMQMKVITSVDENEGRANQL 247
Cdd:PRK12816 226 VSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNL 262
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-247 1.86e-20

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 82.31  E-value: 1.86e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446271423  169 NEVQRSDDGLFRLTAEAqaergAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDENEGRANQL 247
Cdd:pfam06429   1 AGLEKGGDNLFRETDGA-----PILGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 8-239 1.71e-19

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 84.51  E-value: 1.71e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   8 AMGAASQTLNQQaVTASNLANASTPGFRAQlnalRAVPVDGLSLATRTLVTASTPGADMTP------------------- 68
Cdd:PRK12692   8 ATGMSAQQLNLE-VIANNIANLNTTGFKGA----RAEFTDLLYQAERQQGVPNQAGQEAVPegamlglgvraaairnlhr 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  69 -GQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVigeGGPITVPEGS-EITIAADGTISA 145
Cdd:PRK12692  83 qGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLvTMEGYAV---DPAILIPQNTtQVTINESGQVFA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 146 LNPGDppntVAP--VGRLKLVK-AEGNEVQRSDDGLFRLTAEAQAERGAVlAADPSI-RIMSGVLEGSNVKPVEAMTDMI 221
Cdd:PRK12692 160 KIDGQ----VAPqnLGQLTLANfANESGLEPLGNGLYRETPASGAPVVGN-PGDVGFgKIQQGYLEGSNVDPVKEITSLI 234

                        250
                 ....*....|....*...
gi 446271423 222 ANARRFEMQMKVITSVDE 239
Cdd:PRK12692 235 TAQRAFEMNSKVIQAADE 252
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
7-133 2.20e-12

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 65.96  E-value: 2.20e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   7 TAMGAASQTLNqqaVTASNLANASTPGF---RAQ-----LNALRAVPVDGLSLATRTLVTAStpgaDMTPGQLDYTSRPL 78
Cdd:COG1749   10 SGLNAASTALD---VIGNNIANSNTVGFkssRAEfadlvAQSLSGANPTQVGGGVRVASVAQ----IFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  79 DVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLT------IQGHPVIGEG---------GPITVPEGS 133
Cdd:COG1749   83 DLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVnssglyLQGYPADADGtipdtggglEPIQIPTGQ 152
flgG PRK12819
flagellar basal-body rod protein FlgG;
21-248 6.47e-11

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 60.66  E-value: 6.47e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  21 VTASNLANASTPGFRAQLNALRAVPV-------DGLSLATRTLVTASTPGA---DMTPGQLDYTSRPLDVALQ----QDG 86
Cdd:PRK12819  20 VHSNNVANAQTTGFKAENMTSKVFDVqdtyrrgDGAVTNIGSVDYAVVPAAthvNLVQGNIQMTNSDTDFFLDdgpaGTS 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423  87 WLVVQAADGAEGYTRNGNIQVGPTGQL-TIQGHPVIGEGGP-ITVPEGSEITIAADGTisaLNPGDPPNTVAPVGRlKLV 164
Cdd:PRK12819 100 SFFVTSKNGETFLTRDGSFTLNSDRYLqTASGAFVMGENNErIRIPEGAKVAVQADGT---LYDAVTQNNIARLQT-KTV 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423 165 KAEGNE--VQRsDDGLFRL----TAEAQAERGAVlaadpsiriMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVD 238
Cdd:PRK12819 176 SAEQNDrlVQR-ENKSFTLaegnIANLPNGQGIV---------KNGMLENSNVDMTKEMADLMTDQRMIQASQRVMTSFD 245

                        250
                 ....*....|.
gi 446271423 239 E-NEGRANQLL 248
Cdd:PRK12819 246 KiYEKEANEIL 256
flgE PRK05682
flagellar hook protein FlgE; Validated
 7-129 5.83e-09

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 55.61  E-value: 5.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   7 TAMGAASQTLNqqaVTASNLANASTPGF---RAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDVALQ 83
Cdd:PRK05682   8 SGLNAASNRLD---VIGNNIANANTTGFkssRAEFADLYANSAGTNPTQVGSGVKVAGVAQQFSQGSITSTGNSLDLAIS 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446271423  84 QDGWLVVqAADGAEGYTRNGNIQVGPTGQLT------IQGHPVIGEGGPITV 129
Cdd:PRK05682  85 GNGFFVV-SNGGNGFYTRAGAFKLDKNGYLVnaagyyLQGYPADADGGTPPT 135
flgE PRK06803
flagellar basal body protein FlaE;
7-124 2.96e-08

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 53.62  E-value: 2.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446271423   7 TAMGAASQTLNqqaVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADmtpGQLDYTSRPLDVALQQDG 86
Cdd:PRK06803   8 SGLNATTQQLN---TISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQNFSKD---GSLTYTGRGLDLAISGGG 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 446271423  87 WLVVQAADGAEGYTRNGNIQVGPTGQLT------IQGHPVIGEG 124
Cdd:PRK06803  82 FFVLKESDGDTAYTRAGMFRSDVDGYLTdpqgmkLQGYPVDAAG 125
Flg_bb_rod pfam00460
Flagella basal body rod protein;
5-34 6.72e-06

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 41.78  E-value: 6.72e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 446271423    5 IYTAMGAASQTLNQQAVTASNLANASTPGF 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-53 6.10e-05

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 41.82  E-value: 6.10e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446271423   1 MDHAIYTAMGAASQTLN----QQAVTASNLANASTPGFRAQ-------LNALRAVPVDGLSLAT 53
Cdd:COG1815    1 MSILFDKTFGLLEKALDlrslRQEVIASNIANADTPGYKARdvdfeaaLKAALGGGSAGLALAT 64
flgB PRK12627
FlgB family protein;
19-37 4.97e-03

FlgB family protein;


Pssm-ID: 237152 [Multi-domain]  Cd Length: 128  Bit Score: 36.25  E-value: 4.97e-03
                         10
                 ....*....|....*....
gi 446271423  19 QAVTASNLANASTPGFRAQ 37
Cdd:PRK12627  22 QAVVARNVANADTPGYRAR 40
flgB PRK06003
flagellar basal body rod protein FlgB; Reviewed
 19-37 7.35e-03

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 168340  Cd Length: 126  Bit Score: 35.76  E-value: 7.35e-03
                         10
                 ....*....|....*....
gi 446271423  19 QAVTASNLANASTPGFRAQ 37
Cdd:PRK06003  21 QATVAGNIANANTPGYRAR 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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