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Conserved domains on  [gi|446284814|ref|WP_000362669|]
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MULTISPECIES: HilA family transcriptional regulator YgeH [Escherichia]

Protein Classification

transcriptional regulator( domain architecture ID 11485692)

DNA-binding transcriptional regulator containing a winged helix-turn-helix domain; similar to Escherichia coli uncharacterized protein YgeH

Gene Ontology:  GO:0000160|GO:0003677|GO:0006355

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11906 PRK11906
HilA family transcriptional regulator YgeH;
1-458 0e+00

HilA family transcriptional regulator YgeH;


:

Pssm-ID: 183373 [Multi-domain]  Cd Length: 458  Bit Score: 890.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814   1 MDLENKFSYHFLEGLTLTEDGILTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC 80
Cdd:PRK11906   1 MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  81 IFEKIGYDRCIETIYRKGYRFSGQVFKTKRNEDNTSDYSIAIFPFTTSVNTLDPLILNQELVQNISNKKIDGLYTYPMAA 160
Cdd:PRK11906  81 IFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 161 TNFCNDHISQNSFLRRFKPDYFVTGRINQNNAVKTLYIELIDAKNLFLIASNHLPVDELNNTSQFIIDNILQTVHNPERS 240
Cdd:PRK11906 161 TNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 241 VRLAKSDQGYKNHYLSDELLAGKKELYEFTSESIYRAMTIFDGLQNKSDIQTLKTECYCLLAECHMSLALHGKYELELAA 320
Cdd:PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 321 QKALELLHYVSDITNVDGKILAIMGLITGLSGQAKVSHILFEQAKIHTTDIASLYYYRALVNFHNERIEEARICIDKSLQ 400
Cdd:PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 446284814 401 LEPRRRKAVVIKECVDMYVPNPLKSNMKLYYKETSSESHRVIIDNILKLKQLTRICMR 458
Cdd:PRK11906 401 LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR 458
 
Name Accession Description Interval E-value
PRK11906 PRK11906
HilA family transcriptional regulator YgeH;
1-458 0e+00

HilA family transcriptional regulator YgeH;


Pssm-ID: 183373 [Multi-domain]  Cd Length: 458  Bit Score: 890.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814   1 MDLENKFSYHFLEGLTLTEDGILTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC 80
Cdd:PRK11906   1 MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  81 IFEKIGYDRCIETIYRKGYRFSGQVFKTKRNEDNTSDYSIAIFPFTTSVNTLDPLILNQELVQNISNKKIDGLYTYPMAA 160
Cdd:PRK11906  81 IFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 161 TNFCNDHISQNSFLRRFKPDYFVTGRINQNNAVKTLYIELIDAKNLFLIASNHLPVDELNNTSQFIIDNILQTVHNPERS 240
Cdd:PRK11906 161 TNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 241 VRLAKSDQGYKNHYLSDELLAGKKELYEFTSESIYRAMTIFDGLQNKSDIQTLKTECYCLLAECHMSLALHGKYELELAA 320
Cdd:PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 321 QKALELLHYVSDITNVDGKILAIMGLITGLSGQAKVSHILFEQAKIHTTDIASLYYYRALVNFHNERIEEARICIDKSLQ 400
Cdd:PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 446284814 401 LEPRRRKAVVIKECVDMYVPNPLKSNMKLYYKETSSESHRVIIDNILKLKQLTRICMR 458
Cdd:PRK11906 401 LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR 458
CadC1 COG3710
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
18-105 5.37e-25

DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];


Pssm-ID: 442924 [Multi-domain]  Cd Length: 106  Bit Score: 98.82  E-value: 5.37e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  18 TEDGILTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRCIFEKIGYD-RCIETIYR 96
Cdd:COG3710   12 PARRELLRDGEPVRLSPRAFDLLLLLLEHPGRVVSRDELLAAVWPGRVVSDNSLTQAISRLRKALGDDGLEpRLIRTVPR 91


                 ....*....
gi 446284814  97 KGYRFSGQV 105
Cdd:COG3710   92 RGYRLVAPV 100
trans_reg_C cd00383
DNA-binding effector domain of two-component system response regulators; Bacteria and some ...
 23-101 4.14e-16

DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.


Pssm-ID: 294013 [Multi-domain]  Cd Length: 89  Bit Score: 73.28  E-value: 4.14e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  23 LTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWK-NIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRF 101
Cdd:cd00383   10 VTVDGEEVELTPKEFELLELLARNPGRVVSREELLEAVWGyDYEVDDRTVDVHISRLRKKLEDDPEPRLIKTVRGVGYRL 89
Trans_reg_C smart00862
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ...
 27-101 4.15e-14

Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.


Pssm-ID: 214866 [Multi-domain]  Cd Length: 76  Bit Score: 67.19  E-value: 4.15e-14
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446284814    27 NEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWK-NIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRF 101
Cdd:smart00862   1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGdDEDVDDNTLDVHISRLRKKLEDDGDPRLIETVRGVGYRL 76
Trans_reg_C pfam00486
Transcriptional regulatory protein, C terminal;
27-101 5.87e-14

Transcriptional regulatory protein, C terminal;


Pssm-ID: 425712 [Multi-domain]  Cd Length: 77  Bit Score: 66.77  E-value: 5.87e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446284814   27 NEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWK-NIIVSDESLTRCIYSLRCIFEKIGYD-RCIETIYRKGYRF 101
Cdd:pfam00486   1 GEEVELTPKEFKLLELLAENPGRVVSREQLLEEVWGeDYDVDDNTVDVHISRLRKKLEDDPRDpRLIKTVRGVGYRL 77
 
Name Accession Description Interval E-value
PRK11906 PRK11906
HilA family transcriptional regulator YgeH;
1-458 0e+00

HilA family transcriptional regulator YgeH;


Pssm-ID: 183373 [Multi-domain]  Cd Length: 458  Bit Score: 890.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814   1 MDLENKFSYHFLEGLTLTEDGILTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC 80
Cdd:PRK11906   1 MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  81 IFEKIGYDRCIETIYRKGYRFSGQVFKTKRNEDNTSDYSIAIFPFTTSVNTLDPLILNQELVQNISNKKIDGLYTYPMAA 160
Cdd:PRK11906  81 IFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 161 TNFCNDHISQNSFLRRFKPDYFVTGRINQNNAVKTLYIELIDAKNLFLIASNHLPVDELNNTSQFIIDNILQTVHNPERS 240
Cdd:PRK11906 161 TNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 241 VRLAKSDQGYKNHYLSDELLAGKKELYEFTSESIYRAMTIFDGLQNKSDIQTLKTECYCLLAECHMSLALHGKYELELAA 320
Cdd:PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 321 QKALELLHYVSDITNVDGKILAIMGLITGLSGQAKVSHILFEQAKIHTTDIASLYYYRALVNFHNERIEEARICIDKSLQ 400
Cdd:PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 446284814 401 LEPRRRKAVVIKECVDMYVPNPLKSNMKLYYKETSSESHRVIIDNILKLKQLTRICMR 458
Cdd:PRK11906 401 LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR 458
PRK12370 PRK12370
HilA/EilA family virulence transcriptional regulator;
17-412 4.21e-74

HilA/EilA family virulence transcriptional regulator;


Pssm-ID: 237080 [Multi-domain]  Cd Length: 553  Bit Score: 242.45  E-value: 4.21e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  17 LTEDGILTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYR 96
Cdd:PRK12370  21 LNMDGSLLRSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSEDKEHRYIETLYG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  97 KGYRFSGQVFKTKRNEDNTSDYSIAIFPFTTSvNTLDPLILNQELVQNISNKKIDGLYTYPMAATNFCNDHISQNSFLRR 176
Cdd:PRK12370 101 QGYRFNRPVVVVSPPAPQPTTHTLAILPFQMQ-DQVQSESLHYSIVKGLSQYAPFGLSVLPVTITKNCRSVKDILELMDQ 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 177 FKPDYFVTGRINQNNAVKTLYIELIDAKNLFLIASNHLPVDELNNTS--QFIIDNILqtvhnPERSVRLA-KSDQGYKNH 253
Cdd:PRK12370 180 LRPDYYISGQMIPDGNDNIVQIEIVRVKGYHLLHQESIKLIEHQPASllQNKIANLL-----LRCIPGLRwDTKQISELN 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 254 YLSDEL--LAGKKELYEFTSESIYRAMTIFDGLQNKSDIQTLKtecYCLLAECHMSLALHGKYELELAAQKALELLHYVS 331
Cdd:PRK12370 255 SIDSTMvyLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAP---YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 332 DITNVDGKILAIMGLITGLSGQAKVSHILFEQAKIHTTDIASLYYYRALVNFHNERIEEARICIDKSLQLEPRRRKAVVI 411
Cdd:PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411


                 .
gi 446284814 412 K 412
Cdd:PRK12370 412 K 412
CadC1 COG3710
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
18-105 5.37e-25

DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];


Pssm-ID: 442924 [Multi-domain]  Cd Length: 106  Bit Score: 98.82  E-value: 5.37e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  18 TEDGILTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRCIFEKIGYD-RCIETIYR 96
Cdd:COG3710   12 PARRELLRDGEPVRLSPRAFDLLLLLLEHPGRVVSRDELLAAVWPGRVVSDNSLTQAISRLRKALGDDGLEpRLIRTVPR 91


                 ....*....
gi 446284814  97 KGYRFSGQV 105
Cdd:COG3710   92 RGYRLVAPV 100
trans_reg_C cd00383
DNA-binding effector domain of two-component system response regulators; Bacteria and some ...
 23-101 4.14e-16

DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.


Pssm-ID: 294013 [Multi-domain]  Cd Length: 89  Bit Score: 73.28  E-value: 4.14e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  23 LTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWK-NIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRF 101
Cdd:cd00383   10 VTVDGEEVELTPKEFELLELLARNPGRVVSREELLEAVWGyDYEVDDRTVDVHISRLRKKLEDDPEPRLIKTVRGVGYRL 89
Trans_reg_C smart00862
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ...
 27-101 4.15e-14

Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.


Pssm-ID: 214866 [Multi-domain]  Cd Length: 76  Bit Score: 67.19  E-value: 4.15e-14
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446284814    27 NEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWK-NIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRF 101
Cdd:smart00862   1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGdDEDVDDNTLDVHISRLRKKLEDDGDPRLIETVRGVGYRL 76
Trans_reg_C pfam00486
Transcriptional regulatory protein, C terminal;
27-101 5.87e-14

Transcriptional regulatory protein, C terminal;


Pssm-ID: 425712 [Multi-domain]  Cd Length: 77  Bit Score: 66.77  E-value: 5.87e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446284814   27 NEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWK-NIIVSDESLTRCIYSLRCIFEKIGYD-RCIETIYRKGYRF 101
Cdd:pfam00486   1 GEEVELTPKEFKLLELLAENPGRVVSREQLLEEVWGeDYDVDDNTVDVHISRLRKKLEDDPRDpRLIKTVRGVGYRL 77
PRK10161 PRK10161
phosphate response regulator transcription factor PhoB;
12-102 3.41e-05

phosphate response regulator transcription factor PhoB;


Pssm-ID: 182277 [Multi-domain]  Cd Length: 229  Bit Score: 45.09  E-value: 3.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  12 LEGLTL--TEDGILTqGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVW-KNIIVSDESLTRCIYSLRCIFEKIGYD 88
Cdd:PRK10161 134 MQGLSLdpTSHRVMA-GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWgTNVYVEDRTVDVHIRRLRKALEPGGHD 212

                         90
                 ....*....|....
gi 446284814  89 RCIETIYRKGYRFS 102
Cdd:PRK10161 213 RMVQTVRGTGYRFS 226
OmpR COG0745
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ...
 14-93 7.19e-05

DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 440508 [Multi-domain]  Cd Length: 204  Bit Score: 43.79  E-value: 7.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  14 GLTLTEDGILTQGNEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRcifEKIGyDRCIET 93
Cdd:COG0745  129 DLLDLAAREVTRDGEPVELTPKEFRLLELLMRNPGRVVSREQLLEEVWGYDYGDDRTVDVHISRLR---KKLE-DDLIET 204
PRK10153 PRK10153
DNA-binding transcriptional activator CadC; Provisional
 15-100 3.97e-04

DNA-binding transcriptional activator CadC; Provisional


Pssm-ID: 236658 [Multi-domain]  Cd Length: 517  Bit Score: 42.72  E-value: 3.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814  15 LTLTEDGILTQGnEQIYIPPKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRCI-----FEKIGYdr 89
Cdd:PRK10153  13 VTPSENKISRQG-REVTLEPRLIDLLVFFAQHSGEVLSRDELIDHVWDRAIVTDHVVTQSISELRKSlkdgrEDNPEY-- 89

                         90
                 ....*....|.
gi 446284814  90 cIETIYRKGYR 100
Cdd:PRK10153  90 -IVTVPKRGYK 99
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 298-413 6.19e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.60  E-value: 6.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446284814 298 YCLLAECHMSLalhGKYELELAA-QKALELlhyvsDITNVDGKI-LAIMGLITGLSGQAKVshiLFEQA-KIHTTDIASL 374
Cdd:COG4235   20 WLLLGRAYLRL---GRYDEALAAyEKALRL-----DPDNADALLdLAEALLAAGDTEEAEE---LLERAlALDPDNPEAL 88

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 446284814 375 YYYrALVNFHNERIEEARICIDKSLQLEPRRRKAVVIKE 413
Cdd:COG4235   89 YLL-GLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 372-404 5.26e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.42  E-value: 5.26e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 446284814  372 ASLYYYRALVNFHNERIEEARICIDKSLQLEPR 404
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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