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Conserved domains on  [gi|446313389|ref|WP_000391244|]
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MULTISPECIES: aminoglycoside phosphotransferase family protein [Bacillus]

Protein Classification

aminoglycoside phosphotransferase family protein( domain architecture ID 12025366)

aminoglycoside phosphotransferase family protein may catalyze the phosphorylation of small molecules such as aminoglycosides and confer aminoglycoside antibiotic resistance; similar to Streptomyces coelicolor 3-hydroxyasparagine phosphotransferase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
APH pfam01636
Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance ...
19-250 1.89e-30

Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.


:

Pssm-ID: 426359 [Multi-domain]  Cd Length: 239  Bit Score: 114.91  E-value: 1.89e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   19 TCTAISKGFSHEeKYKIELKNQEtYFVKVCDAVH-FERKQEEYTYMKQLESLHI-PTPKLIHFIIIEKLNKCVqvFEWTR 96
Cdd:pfam01636   1 TLRPISSGASNR-TYLVTTGDGR-YVLRLPPPGRaAEELRRELALLRHLAAAGVpPVPRVLAGCTDAELLGLP--FLLME 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   97 GINGEEGLTKLSVEEQYMAGRKAGEVLKRIHSIERESASNKWETSRWNKYERYIEALTDYEVNFLDLKPVLTFVENHKDL 176
Cdd:pfam01636  77 YLPGEVLARPLLPEERGALLEALGRALARLHAVDPAALPLAGRLARLLELLRQLEAALARLLAAELLDRLEELEERLLAA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389  177 LE-----NRPIRFLHDDFHPANSMIHNKEFI--VIDFGGYDFGDPIHDFYNVA-IFTIRISKPFAVGQVHGYF-GGEPSL 247
Cdd:pfam01636 157 LLallpaELPPVLVHGDLHPGNLLVDPGGRVsgVIDFEDAGLGDPAYDLAILLnSWGRELGAELLAAYLAAYGaFGYARL 236

                  ...
gi 446313389  248 HFW 250
Cdd:pfam01636 237 REL 239
 
Name Accession Description Interval E-value
APH pfam01636
Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance ...
19-250 1.89e-30

Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.


Pssm-ID: 426359 [Multi-domain]  Cd Length: 239  Bit Score: 114.91  E-value: 1.89e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   19 TCTAISKGFSHEeKYKIELKNQEtYFVKVCDAVH-FERKQEEYTYMKQLESLHI-PTPKLIHFIIIEKLNKCVqvFEWTR 96
Cdd:pfam01636   1 TLRPISSGASNR-TYLVTTGDGR-YVLRLPPPGRaAEELRRELALLRHLAAAGVpPVPRVLAGCTDAELLGLP--FLLME 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   97 GINGEEGLTKLSVEEQYMAGRKAGEVLKRIHSIERESASNKWETSRWNKYERYIEALTDYEVNFLDLKPVLTFVENHKDL 176
Cdd:pfam01636  77 YLPGEVLARPLLPEERGALLEALGRALARLHAVDPAALPLAGRLARLLELLRQLEAALARLLAAELLDRLEELEERLLAA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389  177 LE-----NRPIRFLHDDFHPANSMIHNKEFI--VIDFGGYDFGDPIHDFYNVA-IFTIRISKPFAVGQVHGYF-GGEPSL 247
Cdd:pfam01636 157 LLallpaELPPVLVHGDLHPGNLLVDPGGRVsgVIDFEDAGLGDPAYDLAILLnSWGRELGAELLAAYLAAYGaFGYARL 236

                  ...
gi 446313389  248 HFW 250
Cdd:pfam01636 237 REL 239
YcbJ COG3173
Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction ...
1-254 5.32e-20

Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction only];


Pssm-ID: 442406 [Multi-domain]  Cd Length: 284  Bit Score: 87.86  E-value: 5.32e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   1 MEEILREieRILEWPRIATCTAISKGFSHEeKYKIELknQETYFVKVCDAVHF--ERKQEEYTYMKQL-ESLHIPTPKLI 77
Cdd:COG3173    8 LRALLAA--QLPGLAGLPEVEPLSGGWSNL-TYRLDT--GDRLVLRRPPRGLAsaHDVRREARVLRALaPRLGVPVPRPL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389  78 HFII-IEKLNKCVQVFEWTRGINGEEGLTKLSVEEQYMAGRKAGEVLKRIHSIERESA--------SNKWETSRWnkYER 148
Cdd:COG3173   83 ALGEdGEVIGAPFYVMEWVEGETLEDALPDLSPAERRALARALGEFLAALHAVDPAAAgladgrpeGLERQLARW--RAQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389 149 YIEALTDYEVNFLDLKPVLTFVENHKDllENRPIRFLHDDFHPANSMIHNKEF---IVIDFGGYDFGDPIHDFYNVAIFT 225
Cdd:COG3173  161 LRRALARTDDLPALRERLAAWLAANLP--EWGPPVLVHGDLRPGNLLVDPDDGrltAVIDWELATLGDPAADLAYLLLYW 238
                        250       260       270
                 ....*....|....*....|....*....|....
gi 446313389 226 IRISKPFAVGQ--VHGYF---GGEPSLHFWKLYT 254
Cdd:COG3173  239 RLPDDLLGPRAafLAAYEeatGDLDDLTWWALAD 272
APH_ChoK_like cd05120
Aminoglycoside 3'-phosphotransferase and Choline Kinase family; This family is composed of APH, ...
37-218 5.95e-03

Aminoglycoside 3'-phosphotransferase and Choline Kinase family; This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270690 [Multi-domain]  Cd Length: 158  Bit Score: 36.90  E-value: 5.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389  37 LKNQETYFVKVCDAVHFERKQEEYTYMKQLES-LHIPTPKLIHFIIIEKLNKCVQvfEWTRGINGEEGLTKLSVEEQYMA 115
Cdd:cd05120   17 LGDPREYVLKIGPPRLKKDLEKEAAMLQLLAGkLSLPVPKVYGFGESDGWEYLLM--ERIEGETLSEVWPRLSEEEKEKI 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389 116 GRKAGEVLKRIHSIeresasnkwetsrwnkyeryiealtDYEVnfldlkpvltfvenhkdllenrpirFLHDDFHPANSM 195
Cdd:cd05120   95 ADQLAEILAALHRI-------------------------DSSV-------------------------LTHGDLHPGNIL 124
                        170       180
                 ....*....|....*....|....*
gi 446313389 196 IHNKEFI--VIDFGGYDFGDPIHDF 218
Cdd:cd05120  125 VKPDGKLsgIIDWEFAGYGPPAFDY 149
 
Name Accession Description Interval E-value
APH pfam01636
Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance ...
19-250 1.89e-30

Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.


Pssm-ID: 426359 [Multi-domain]  Cd Length: 239  Bit Score: 114.91  E-value: 1.89e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   19 TCTAISKGFSHEeKYKIELKNQEtYFVKVCDAVH-FERKQEEYTYMKQLESLHI-PTPKLIHFIIIEKLNKCVqvFEWTR 96
Cdd:pfam01636   1 TLRPISSGASNR-TYLVTTGDGR-YVLRLPPPGRaAEELRRELALLRHLAAAGVpPVPRVLAGCTDAELLGLP--FLLME 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   97 GINGEEGLTKLSVEEQYMAGRKAGEVLKRIHSIERESASNKWETSRWNKYERYIEALTDYEVNFLDLKPVLTFVENHKDL 176
Cdd:pfam01636  77 YLPGEVLARPLLPEERGALLEALGRALARLHAVDPAALPLAGRLARLLELLRQLEAALARLLAAELLDRLEELEERLLAA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389  177 LE-----NRPIRFLHDDFHPANSMIHNKEFI--VIDFGGYDFGDPIHDFYNVA-IFTIRISKPFAVGQVHGYF-GGEPSL 247
Cdd:pfam01636 157 LLallpaELPPVLVHGDLHPGNLLVDPGGRVsgVIDFEDAGLGDPAYDLAILLnSWGRELGAELLAAYLAAYGaFGYARL 236

                  ...
gi 446313389  248 HFW 250
Cdd:pfam01636 237 REL 239
YcbJ COG3173
Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction ...
1-254 5.32e-20

Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction only];


Pssm-ID: 442406 [Multi-domain]  Cd Length: 284  Bit Score: 87.86  E-value: 5.32e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   1 MEEILREieRILEWPRIATCTAISKGFSHEeKYKIELknQETYFVKVCDAVHF--ERKQEEYTYMKQL-ESLHIPTPKLI 77
Cdd:COG3173    8 LRALLAA--QLPGLAGLPEVEPLSGGWSNL-TYRLDT--GDRLVLRRPPRGLAsaHDVRREARVLRALaPRLGVPVPRPL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389  78 HFII-IEKLNKCVQVFEWTRGINGEEGLTKLSVEEQYMAGRKAGEVLKRIHSIERESA--------SNKWETSRWnkYER 148
Cdd:COG3173   83 ALGEdGEVIGAPFYVMEWVEGETLEDALPDLSPAERRALARALGEFLAALHAVDPAAAgladgrpeGLERQLARW--RAQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389 149 YIEALTDYEVNFLDLKPVLTFVENHKDllENRPIRFLHDDFHPANSMIHNKEF---IVIDFGGYDFGDPIHDFYNVAIFT 225
Cdd:COG3173  161 LRRALARTDDLPALRERLAAWLAANLP--EWGPPVLVHGDLRPGNLLVDPDDGrltAVIDWELATLGDPAADLAYLLLYW 238
                        250       260       270
                 ....*....|....*....|....*....|....
gi 446313389 226 IRISKPFAVGQ--VHGYF---GGEPSLHFWKLYT 254
Cdd:COG3173  239 RLPDDLLGPRAafLAAYEeatGDLDDLTWWALAD 272
SrkA COG2334
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist [Signal ...
7-218 3.14e-05

Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist [Signal transduction mechanisms]; Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist is part of the Pathway/BioSystem: Threonine biosynthesis


Pssm-ID: 441905 [Multi-domain]  Cd Length: 297  Bit Score: 44.92  E-value: 3.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389   7 EIERILE-WPrIATCTAIsKGFSHEE--KYKIELKNQETYFVKVCDAVHFERKQ--EEYTYMKQLESLHIPTPKLIHFI- 80
Cdd:COG2334    2 ELAAALErYG-LGPLSSL-KPLNSGEnrNYRVETEDGRRYVLKLYRPGRWSPEEipFELALLAHLAAAGLPVPAPVPTRd 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389  81 --IIEKLN-KCVQVFEWtrgINGEEgLTKLSVEEQYMAGRKAGevlkRIH----SIERESASNkweTSRWNKYERYIEAL 153
Cdd:COG2334   80 geTLLELEgRPAALFPF---LPGRS-PEEPSPEQLEELGRLLA----RLHralaDFPRPNARD---LAWWDELLERLLGP 148
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389 154 TDYEVNFLD-LKPVLTFVENH-KDLLENRPIRFLHDDFHPANSMIHNKEFI-VIDFggYD--FGDPIHDF 218
Cdd:COG2334  149 LLPDPEDRAlLEELLDRLEARlAPLLGALPRGVIHGDLHPDNVLFDGDGVSgLIDF--DDagYGPRLYDL 216
APH_ChoK_like cd05120
Aminoglycoside 3'-phosphotransferase and Choline Kinase family; This family is composed of APH, ...
37-218 5.95e-03

Aminoglycoside 3'-phosphotransferase and Choline Kinase family; This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270690 [Multi-domain]  Cd Length: 158  Bit Score: 36.90  E-value: 5.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389  37 LKNQETYFVKVCDAVHFERKQEEYTYMKQLES-LHIPTPKLIHFIIIEKLNKCVQvfEWTRGINGEEGLTKLSVEEQYMA 115
Cdd:cd05120   17 LGDPREYVLKIGPPRLKKDLEKEAAMLQLLAGkLSLPVPKVYGFGESDGWEYLLM--ERIEGETLSEVWPRLSEEEKEKI 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446313389 116 GRKAGEVLKRIHSIeresasnkwetsrwnkyeryiealtDYEVnfldlkpvltfvenhkdllenrpirFLHDDFHPANSM 195
Cdd:cd05120   95 ADQLAEILAALHRI-------------------------DSSV-------------------------LTHGDLHPGNIL 124
                        170       180
                 ....*....|....*....|....*
gi 446313389 196 IHNKEFI--VIDFGGYDFGDPIHDF 218
Cdd:cd05120  125 VKPDGKLsgIIDWEFAGYGPPAFDY 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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