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Conserved domains on  [gi|446314104|ref|WP_000391959|]
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MULTISPECIES: YdaS family helix-turn-helix protein [Enterobacteriaceae]

Protein Classification

transcriptional regulator( domain architecture ID 10008341)

helix-turn-helix-type transcriptional regulator

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdaS COG4197
DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];
1-72 4.90e-16

DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];


:

Pssm-ID: 443351  Cd Length: 68  Bit Score: 65.32  E-value: 4.90e-16
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446314104  1 MEELRLYLNSlsleeQREFATKCGTSIGYLRKALSRNHELGAALCVLIEKFSNGEVTRKDLHP-VDWESIWPE 72
Cdd:COG4197   1 LEKAIEALGS-----QSALARALGVSQQAVSQWLNGKRRVPAERCLAIERATGGAVTREELRPdLDWAYLWPE 68
 
Name Accession Description Interval E-value
YdaS COG4197
DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];
1-72 4.90e-16

DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];


Pssm-ID: 443351  Cd Length: 68  Bit Score: 65.32  E-value: 4.90e-16
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446314104  1 MEELRLYLNSlsleeQREFATKCGTSIGYLRKALSRNHELGAALCVLIEKFSNGEVTRKDLHP-VDWESIWPE 72
Cdd:COG4197   1 LEKAIEALGS-----QSALARALGVSQQAVSQWLNGKRRVPAERCLAIERATGGAVTREELRPdLDWAYLWPE 68
YdaS_antitoxin pfam15943
Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family ...
 15-69 1.40e-09

Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.


Pssm-ID: 435033  Cd Length: 65  Bit Score: 48.88  E-value: 1.40e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446314104  15 EQREFATKCGTSIGYLRKALSRNHELGAALCVLIEKFSNGEVTRKDLHP-VDWESI 69
Cdd:pfam15943 10 GQKALAEALGVTQQAVSQWLHGKKGIPAEYCPAIERATSGKVTREELRPdVDWEFI 65
 
Name Accession Description Interval E-value
YdaS COG4197
DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];
1-72 4.90e-16

DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];


Pssm-ID: 443351  Cd Length: 68  Bit Score: 65.32  E-value: 4.90e-16
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446314104  1 MEELRLYLNSlsleeQREFATKCGTSIGYLRKALSRNHELGAALCVLIEKFSNGEVTRKDLHP-VDWESIWPE 72
Cdd:COG4197   1 LEKAIEALGS-----QSALARALGVSQQAVSQWLNGKRRVPAERCLAIERATGGAVTREELRPdLDWAYLWPE 68
YdaS_antitoxin pfam15943
Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family ...
 15-69 1.40e-09

Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.


Pssm-ID: 435033  Cd Length: 65  Bit Score: 48.88  E-value: 1.40e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446314104  15 EQREFATKCGTSIGYLRKALSRNHELGAALCVLIEKFSNGEVTRKDLHP-VDWESI 69
Cdd:pfam15943 10 GQKALAEALGVTQQAVSQWLHGKKGIPAEYCPAIERATSGKVTREELRPdVDWEFI 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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