|
Name |
Accession |
Description |
Interval |
E-value |
| MobT |
NF041493 |
MobT family relaxase; |
15-397 |
0e+00 |
|
MobT family relaxase;
Pssm-ID: 469381 [Multi-domain] Cd Length: 383 Bit Score: 840.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLEMLFDYVRIRFPTTDVQQVVENI 94
Cdd:NF041493 1 LKEKRLAYGVSQNKLAVAAGITRQYLSDIETGKVTPSEELKETLLEALERFNPDAPLEMLFDYVRIRFPTTDVQHVIEDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 95 LQLKLSYFLHEDYGFYSYSEHYALGDIFVLCSHELDKGVLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLD 174
Cdd:NF041493 81 LKLKMDYMLHEDYGFYSYTEHYVFGDIFVMVSPDEEKGVLLELKGKGCRQFESFLLAQHRSWYDFFMDALVEGGVMKRLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 175 LAINDKTGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIYEKDYEQYKKNDIPI 254
Cdd:NF041493 161 LAINDKTGILDIPELTEKCRNEECISVFRSFKSYRSGELVRREEKPDMGNTLYIGSLKSEVYFCIYEKDYEQYVKNGIPI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 255 EDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFVDKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKP 334
Cdd:NF041493 241 EEAEVKNRFEIRLKNERAYHAVRDLLTYYDAERTAFSIINRYIRFVDKDETKRRSDWKTNERWAWFIGENREKLKLTTKP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446320429 335 EPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVI 397
Cdd:NF041493 321 EPYTFERTLNWLARQVAPTLKVAKKLDEINQTDIIKDMIRHAKLTERHEKILEQQTASTEEVI 383
|
|
| NicK |
COG2946 |
DNA relaxase NicK [Replication, recombination and repair]; |
65-393 |
5.18e-109 |
|
DNA relaxase NicK [Replication, recombination and repair];
Pssm-ID: 442189 [Multi-domain] Cd Length: 302 Bit Score: 322.34 E-value: 5.18e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 65 FNPDAPLEMLFDYVRIRFP-TTDVQQVVENILQLKlSYFLHEDYGFYSYSEHYALGDI--FVLCSHELDKGVLVELKGRG 141
Cdd:COG2946 2 KRDGSSNSVLIDYLRFTFKeTDDLEEILEEILGLK-DYFSHERKGFYGYEESYSLGDIvgFVGFGEGQNGTVLVELSGTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 142 CRQFESYLLAqqrSWYE-FFMDVLVAGGVMKRLDLAINDKTGILNIPVLTEKCQQEECISVFRSFKSYRSGelVRKEEKE 220
Cdd:COG2946 81 CRQAEEYLEA---GWYDrLFDWLQDPGGKITRIDLAIDDFDGELSIEQAVSKYKKGLFISRGRRPKYELVG--TDWENGK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 221 CMGNTLYIGSLQSEVYFCIYEKDYEQYKKNdipiedaEVKNRFEIRLKNERAYYAVRDLLvydNPEHTAFKIINRYIRFV 300
Cdd:COG2946 156 GKGRTLYIGSRESGKYWRIYEKGKELGDKE-------SSWVRFELRLKNEKAVIPVDILL---NPGEYLAGAYNIYARFV 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 301 DKDDSKprsdwklneewawfignNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDILDHA-KLT 379
Cdd:COG2946 226 DAEPED-----------------SNEKIPLTVKPAKISLERTLRWLRRQVGPTLNMLKEIDGLDAEEIVEDLVRDGkKLP 288
|
330
....*....|....
gi 446320429 380 DRHKQILKQQSVKE 393
Cdd:COG2946 289 KRLEKIIEQQVTDA 302
|
|
| Rep_trans |
pfam02486 |
Replication initiation factor; Plasmid replication is initiated by the replication initiation ... |
168-373 |
5.16e-90 |
|
Replication initiation factor; Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50.
Pssm-ID: 426796 Cd Length: 201 Bit Score: 269.98 E-value: 5.16e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 168 GVMKRLDLAINDKTGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEkECMGNTLYIGSLQSEVYFCIYEKDYEQY 247
Cdd:pfam02486 1 GKITRIDLAIDDFDGELDIEELKKKYRNGLCISRFRRFKYYGSGELVDGED-VGTGKTLYIGSRKSEKYLRIYEKGYEQG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 248 KKNDIPIEdaEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFVDKDDSKpRSDWKLNEEWAWFIGnNRER 327
Cdd:pfam02486 80 DKEGIPVE--SPWVRYELRLRNERAEIPVDELLYGRGLYEIAFSILNNYLRFIDKEDDK-KSRWKTNRWWADFIG-TVER 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 446320429 328 LKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDIL 373
Cdd:pfam02486 156 IKLTVKPEEYTLDRTLRWLRRQVAPTLKMLYEADGLNGEDYLQELI 201
|
|
| HTH_XRE |
smart00530 |
Helix-turn-helix XRE-family like proteins; |
15-63 |
3.60e-10 |
|
Helix-turn-helix XRE-family like proteins;
Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 55.22 E-value: 3.60e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALE 63
Cdd:smart00530 2 LKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALG 50
|
|
| HTH_XRE |
cd00093 |
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
15-63 |
9.53e-10 |
|
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 54.10 E-value: 9.53e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALE 63
Cdd:cd00093 4 LKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALG 52
|
|
| PHA00202 |
PHA00202 |
DNA replication initiation protein |
133-246 |
8.70e-05 |
|
DNA replication initiation protein
Pssm-ID: 164786 [Multi-domain] Cd Length: 388 Bit Score: 44.21 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 133 VLVELKGRGCRQfesyLLAQQRSW--YEFFMDVLvagGVMK--RLDLAINDKTGILNIPvLTEKCQQEECisvFRSFKSY 208
Cdd:PHA00202 156 VFFQINGTGCKH----VFARRPTWslHDWLTNVL---GITRlvRLDLAVDDYTGNFDAK-YAEKCFYEGA---FRTAPRG 224
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446320429 209 RSGELVrkEEKECMGNTLY------IGSLQSEVYFCIYEKDYEQ 246
Cdd:PHA00202 225 QGPSMV--PHKRITSIGALmeeatiVGSRSSAIYWRIYNKKLEQ 266
|
|
| couple_hipB |
TIGR03070 |
transcriptional regulator, y4mF family; Members of this family belong to a clade of ... |
13-47 |
1.20e-04 |
|
transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]
Pssm-ID: 213767 [Multi-domain] Cd Length: 58 Bit Score: 39.56 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|....*
gi 446320429 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGK 47
Cdd:TIGR03070 5 ILVRARRKALGLTQADLADLAGVGLRFIRDLENGK 39
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MobT |
NF041493 |
MobT family relaxase; |
15-397 |
0e+00 |
|
MobT family relaxase;
Pssm-ID: 469381 [Multi-domain] Cd Length: 383 Bit Score: 840.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLEMLFDYVRIRFPTTDVQQVVENI 94
Cdd:NF041493 1 LKEKRLAYGVSQNKLAVAAGITRQYLSDIETGKVTPSEELKETLLEALERFNPDAPLEMLFDYVRIRFPTTDVQHVIEDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 95 LQLKLSYFLHEDYGFYSYSEHYALGDIFVLCSHELDKGVLVELKGRGCRQFESYLLAQQRSWYEFFMDVLVAGGVMKRLD 174
Cdd:NF041493 81 LKLKMDYMLHEDYGFYSYTEHYVFGDIFVMVSPDEEKGVLLELKGKGCRQFESFLLAQHRSWYDFFMDALVEGGVMKRLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 175 LAINDKTGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEKECMGNTLYIGSLQSEVYFCIYEKDYEQYKKNDIPI 254
Cdd:NF041493 161 LAINDKTGILDIPELTEKCRNEECISVFRSFKSYRSGELVRREEKPDMGNTLYIGSLKSEVYFCIYEKDYEQYVKNGIPI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 255 EDAEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFVDKDDSKPRSDWKLNEEWAWFIGNNRERLKLTTKP 334
Cdd:NF041493 241 EEAEVKNRFEIRLKNERAYHAVRDLLTYYDAERTAFSIINRYIRFVDKDETKRRSDWKTNERWAWFIGENREKLKLTTKP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446320429 335 EPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDILDHAKLTDRHKQILKQQSVKEQDVI 397
Cdd:NF041493 321 EPYTFERTLNWLARQVAPTLKVAKKLDEINQTDIIKDMIRHAKLTERHEKILEQQTASTEEVI 383
|
|
| NicK |
COG2946 |
DNA relaxase NicK [Replication, recombination and repair]; |
65-393 |
5.18e-109 |
|
DNA relaxase NicK [Replication, recombination and repair];
Pssm-ID: 442189 [Multi-domain] Cd Length: 302 Bit Score: 322.34 E-value: 5.18e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 65 FNPDAPLEMLFDYVRIRFP-TTDVQQVVENILQLKlSYFLHEDYGFYSYSEHYALGDI--FVLCSHELDKGVLVELKGRG 141
Cdd:COG2946 2 KRDGSSNSVLIDYLRFTFKeTDDLEEILEEILGLK-DYFSHERKGFYGYEESYSLGDIvgFVGFGEGQNGTVLVELSGTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 142 CRQFESYLLAqqrSWYE-FFMDVLVAGGVMKRLDLAINDKTGILNIPVLTEKCQQEECISVFRSFKSYRSGelVRKEEKE 220
Cdd:COG2946 81 CRQAEEYLEA---GWYDrLFDWLQDPGGKITRIDLAIDDFDGELSIEQAVSKYKKGLFISRGRRPKYELVG--TDWENGK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 221 CMGNTLYIGSLQSEVYFCIYEKDYEQYKKNdipiedaEVKNRFEIRLKNERAYYAVRDLLvydNPEHTAFKIINRYIRFV 300
Cdd:COG2946 156 GKGRTLYIGSRESGKYWRIYEKGKELGDKE-------SSWVRFELRLKNEKAVIPVDILL---NPGEYLAGAYNIYARFV 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 301 DKDDSKprsdwklneewawfignNRERLKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDILDHA-KLT 379
Cdd:COG2946 226 DAEPED-----------------SNEKIPLTVKPAKISLERTLRWLRRQVGPTLNMLKEIDGLDAEEIVEDLVRDGkKLP 288
|
330
....*....|....
gi 446320429 380 DRHKQILKQQSVKE 393
Cdd:COG2946 289 KRLEKIIEQQVTDA 302
|
|
| Rep_trans |
pfam02486 |
Replication initiation factor; Plasmid replication is initiated by the replication initiation ... |
168-373 |
5.16e-90 |
|
Replication initiation factor; Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50.
Pssm-ID: 426796 Cd Length: 201 Bit Score: 269.98 E-value: 5.16e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 168 GVMKRLDLAINDKTGILNIPVLTEKCQQEECISVFRSFKSYRSGELVRKEEkECMGNTLYIGSLQSEVYFCIYEKDYEQY 247
Cdd:pfam02486 1 GKITRIDLAIDDFDGELDIEELKKKYRNGLCISRFRRFKYYGSGELVDGED-VGTGKTLYIGSRKSEKYLRIYEKGYEQG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 248 KKNDIPIEdaEVKNRFEIRLKNERAYYAVRDLLVYDNPEHTAFKIINRYIRFVDKDDSKpRSDWKLNEEWAWFIGnNRER 327
Cdd:pfam02486 80 DKEGIPVE--SPWVRYELRLRNERAEIPVDELLYGRGLYEIAFSILNNYLRFIDKEDDK-KSRWKTNRWWADFIG-TVER 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 446320429 328 LKLTTKPEPYSFQRTLNWLSHQVAPTLKVAIKLDEINQTQVVKDIL 373
Cdd:pfam02486 156 IKLTVKPEEYTLDRTLRWLRRQVAPTLKMLYEADGLNGEDYLQELI 201
|
|
| Rol_Rep_N |
pfam18106 |
Rolling Circle replication initiation protein N-terminal domain; This is the N-terminal domain ... |
72-160 |
1.11e-34 |
|
Rolling Circle replication initiation protein N-terminal domain; This is the N-terminal domain of the Rolling Circle Replication Initiator Protein (Rep) from Geobacillus stearothermophilus. This protein acts on plasmids from family pT181 to initiate replication, recruit a helicase to the site of initiation and terminate replication after DNA synthesis. These proteins possess a unique active site and a catalytically essential metal ion is bound in a distinct manner from other rolling circle Reps.
Pssm-ID: 465652 Cd Length: 92 Bit Score: 123.46 E-value: 1.11e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 72 EMLFDYVRIRFPTTDVQQVVENILQLKLSYFLHEDYGFYSYSEHYALGDIFVLCS-HELDKGVLVELKGRGCRQFESYLL 150
Cdd:pfam18106 1 EALIDYLRIRFKTHDPDEVIEDILGIPPDFFVLEPRGFYGYEGTYSFGDIKVFYSpNDDNMGVLIELSGQGCREFESFLE 80
|
90
....*....|
gi 446320429 151 AQQRSWYEFF 160
Cdd:pfam18106 81 AQGRTWYDFF 90
|
|
| HTH_XRE |
smart00530 |
Helix-turn-helix XRE-family like proteins; |
15-63 |
3.60e-10 |
|
Helix-turn-helix XRE-family like proteins;
Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 55.22 E-value: 3.60e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALE 63
Cdd:smart00530 2 LKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALG 50
|
|
| XRE |
COG1476 |
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
13-77 |
4.78e-10 |
|
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 55.24 E-value: 4.78e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446320429 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERfnpdaPLEMLFDY 77
Cdd:COG1476 7 NRLKELRKERGLTQEELAELLGVSRQTISAIENGKYNPSLELALKIARALGV-----SLEELFSL 66
|
|
| HTH_XRE |
cd00093 |
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
15-63 |
9.53e-10 |
|
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 54.10 E-value: 9.53e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALE 63
Cdd:cd00093 4 LKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALG 52
|
|
| HipB |
COG1396 |
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
13-63 |
2.16e-09 |
|
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 53.85 E-value: 2.16e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 446320429 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALE 63
Cdd:COG1396 10 ERLRELRKARGLTQEELAERLGVSRSTISRIERGRRNPSLETLLKLAKALG 60
|
|
| HTH_3 |
pfam01381 |
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
15-53 |
4.86e-08 |
|
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.
Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 49.08 E-value: 4.86e-08
10 20 30
....*....|....*....|....*....|....*....
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSED 53
Cdd:pfam01381 1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLE 39
|
|
| AF2118 |
COG3620 |
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
8-64 |
1.91e-07 |
|
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription];
Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 48.86 E-value: 1.91e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 446320429 8 EQTWLQHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALER 64
Cdd:COG3620 15 DDTLGEALRLMRKELGLSQLPVAELVGVSQSDILRIESGKRDPTVSTLEKIAEALGK 71
|
|
| aMBF1 |
COG1813 |
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ... |
15-63 |
9.14e-07 |
|
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 441418 [Multi-domain] Cd Length: 70 Bit Score: 46.08 E-value: 9.14e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALE 63
Cdd:COG1813 17 IREAREARGLSQEELAEKLGVSESTIRRIERGEATPSLDTLRKLEKALG 65
|
|
| VapI |
COG3093 |
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense ... |
14-54 |
1.12e-05 |
|
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms];
Pssm-ID: 442327 [Multi-domain] Cd Length: 87 Bit Score: 43.26 E-value: 1.12e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 446320429 14 HLKEKRL-AYGLSQNRLAVATGITRQYLSDIETGKVKPSEDL 54
Cdd:COG3093 12 ILREEFLePLGLSQTELAKALGVSRQRISEILNGKRAITADT 53
|
|
| HTH_31 |
pfam13560 |
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
12-65 |
2.05e-05 |
|
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 42.13 E-value: 2.05e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 446320429 12 LQHLKEKRlayGLSQNRLAVATGITRQYLSDIETGK-VKPSedlqqslWEALERF 65
Cdd:pfam13560 6 LRRLRERA---GLSQEALARRLGVSRSTLSRLETGRrGRPS-------PAVVERL 50
|
|
| PHA00202 |
PHA00202 |
DNA replication initiation protein |
133-246 |
8.70e-05 |
|
DNA replication initiation protein
Pssm-ID: 164786 [Multi-domain] Cd Length: 388 Bit Score: 44.21 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446320429 133 VLVELKGRGCRQfesyLLAQQRSW--YEFFMDVLvagGVMK--RLDLAINDKTGILNIPvLTEKCQQEECisvFRSFKSY 208
Cdd:PHA00202 156 VFFQINGTGCKH----VFARRPTWslHDWLTNVL---GITRlvRLDLAVDDYTGNFDAK-YAEKCFYEGA---FRTAPRG 224
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446320429 209 RSGELVrkEEKECMGNTLY------IGSLQSEVYFCIYEKDYEQ 246
Cdd:PHA00202 225 QGPSMV--PHKRITSIGALmeeatiVGSRSSAIYWRIYNKKLEQ 266
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|
| couple_hipB |
TIGR03070 |
transcriptional regulator, y4mF family; Members of this family belong to a clade of ... |
13-47 |
1.20e-04 |
|
transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]
Pssm-ID: 213767 [Multi-domain] Cd Length: 58 Bit Score: 39.56 E-value: 1.20e-04
10 20 30
....*....|....*....|....*....|....*
gi 446320429 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGK 47
Cdd:TIGR03070 5 ILVRARRKALGLTQADLADLAGVGLRFIRDLENGK 39
|
|
| RodZ |
COG1426 |
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ... |
13-49 |
2.60e-04 |
|
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441035 [Multi-domain] Cd Length: 71 Bit Score: 39.02 E-value: 2.60e-04
10 20 30
....*....|....*....|....*....|....*..
gi 446320429 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVK 49
Cdd:COG1426 8 ELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFD 44
|
|
| YiaG |
COG2944 |
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; |
15-51 |
6.40e-04 |
|
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
Pssm-ID: 442187 [Multi-domain] Cd Length: 64 Bit Score: 37.61 E-value: 6.40e-04
10 20 30
....*....|....*....|....*....|....*..
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPS 51
Cdd:COG2944 11 IRALRERLGLSQAEFAALLGVSVSTVRRWEQGRRKPS 47
|
|
| PRK09943 |
PRK09943 |
HTH-type transcriptional regulator PuuR; |
15-70 |
6.62e-04 |
|
HTH-type transcriptional regulator PuuR;
Pssm-ID: 182158 [Multi-domain] Cd Length: 185 Bit Score: 40.55 E-value: 6.62e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWE----ALERF-----NPDAP 70
Cdd:PRK09943 12 LSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKvyglSLSEFfsepeKPDEP 76
|
|
| PRK13890 |
PRK13890 |
conjugal transfer protein TrbA; Provisional |
23-77 |
2.99e-03 |
|
conjugal transfer protein TrbA; Provisional
Pssm-ID: 237547 [Multi-domain] Cd Length: 120 Bit Score: 37.42 E-value: 2.99e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 446320429 23 GLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALErfnpdAPLEMLFDY 77
Cdd:PRK13890 18 HMTKKELSERSGVSISFLSDLTTGKANPSLKVMEAIADALE-----TPLPLLLES 67
|
|
| HTH_19 |
pfam12844 |
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ... |
15-63 |
5.19e-03 |
|
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.
Pssm-ID: 463728 [Multi-domain] Cd Length: 64 Bit Score: 35.34 E-value: 5.19e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446320429 15 LKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALE 63
Cdd:pfam12844 4 LRKAREERGLTQEELAERLGISRSQLSAIENGKSVPPAETLYKIAELLG 52
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