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Conserved domains on  [gi|446320817|ref|WP_000398672|]
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MULTISPECIES: beta-class phenol-soluble modulin [Bacteria]

Protein Classification

PSMbeta domain-containing protein( domain architecture ID 10527241)

PSMbeta domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSMbeta pfam05480
Phenol-soluble modulin beta protein; This family consists of several different short ...
 1-43 2.32e-15

Phenol-soluble modulin beta protein; This family consists of several different short Staphylococcal proteins known as the phenol-soluble modulin beta proteins. The family contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.


:

Pssm-ID: 428486  Cd Length: 43  Bit Score: 61.54  E-value: 2.32e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446320817   1 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFG 43
Cdd:pfam05480  1 MTKLAEAIKNTVQAAIAHDWAKLGTSIVDIVENGVGLLSKIFG 43
 
Name Accession Description Interval E-value
PSMbeta pfam05480
Phenol-soluble modulin beta protein; This family consists of several different short ...
 1-43 2.32e-15

Phenol-soluble modulin beta protein; This family consists of several different short Staphylococcal proteins known as the phenol-soluble modulin beta proteins. The family contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.


Pssm-ID: 428486  Cd Length: 43  Bit Score: 61.54  E-value: 2.32e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446320817   1 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFG 43
Cdd:pfam05480  1 MTKLAEAIKNTVQAAIAHDWAKLGTSIVDIVENGVGLLSKIFG 43
 
Name Accession Description Interval E-value
PSMbeta pfam05480
Phenol-soluble modulin beta protein; This family consists of several different short ...
 1-43 2.32e-15

Phenol-soluble modulin beta protein; This family consists of several different short Staphylococcal proteins known as the phenol-soluble modulin beta proteins. The family contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.


Pssm-ID: 428486  Cd Length: 43  Bit Score: 61.54  E-value: 2.32e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446320817   1 MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFG 43
Cdd:pfam05480  1 MTKLAEAIKNTVQAAIAHDWAKLGTSIVDIVENGVGLLSKIFG 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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