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Conserved domains on  [gi|446333963|ref|WP_000411818|]
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MULTISPECIES: helix-turn-helix domain-containing protein [Bacillus cereus group]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 11443570)

helix-turn-helix domain-containing protein such as an XRE (Xenobiotic Response Element) family transcriptional regulator

Gene Ontology:  GO:0003677
PubMed:  37972151

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
71-112 3.93e-05

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


:

Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 41.14  E-value: 3.93e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446333963  71 EDIGKIVYEERIKSGIRQDELCHNI-CSKAYLSKIENNKTIPT 112
Cdd:COG1396    6 KALGERLRELRKARGLTQEELAERLgVSRSTISRIERGRRNPS 48
 
Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
71-112 3.93e-05

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 41.14  E-value: 3.93e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446333963  71 EDIGKIVYEERIKSGIRQDELCHNI-CSKAYLSKIENNKTIPT 112
Cdd:COG1396    6 KALGERLRELRKARGLTQEELAERLgVSRSTISRIERGRRNPS 48
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 74-112 2.63e-03

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 35.22  E-value: 2.63e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 446333963  74 GKIVYEERIKSGIRQDELCHNI-CSKAYLSKIENNKTIPT 112
Cdd:cd00093    1 GERLKELRKEKGLTQEELAEKLgVSRSTISRIENGKRNPS 40
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
77-112 7.71e-03

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 34.03  E-value: 7.71e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 446333963    77 VYEERIKSGIRQDELCHNI-CSKAYLSKIENNKTIPT 112
Cdd:smart00530   2 LKELREEKGLTQEELAEKLgVSRSTLSRIENGKRKPS 38
 
Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
71-112 3.93e-05

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 41.14  E-value: 3.93e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446333963  71 EDIGKIVYEERIKSGIRQDELCHNI-CSKAYLSKIENNKTIPT 112
Cdd:COG1396    6 KALGERLRELRKARGLTQEELAERLgVSRSTISRIERGRRNPS 48
aMBF1 COG1813
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ...
 71-124 2.98e-04

Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441418 [Multi-domain]  Cd Length: 70  Bit Score: 38.38  E-value: 2.98e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446333963  71 EDIGKIVYEERIKSGIRQDELCHNI-CSKAYLSKIENNKTIPTSHITNLLYKRLN 124
Cdd:COG1813   11 EDYGERIREAREARGLSQEELAEKLgVSESTIRRIERGEATPSLDTLRKLEKALG 65
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 74-112 2.63e-03

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 35.22  E-value: 2.63e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 446333963  74 GKIVYEERIKSGIRQDELCHNI-CSKAYLSKIENNKTIPT 112
Cdd:cd00093    1 GERLKELRKEKGLTQEELAEKLgVSRSTISRIENGKRNPS 40
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
77-112 7.71e-03

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 34.03  E-value: 7.71e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 446333963    77 VYEERIKSGIRQDELCHNI-CSKAYLSKIENNKTIPT 112
Cdd:smart00530   2 LKELREEKGLTQEELAEKLgVSRSTLSRIENGKRKPS 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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