|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
4-244 |
5.87e-86 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 256.28 E-value: 5.87e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 4 ITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLD-QQIIAYAQE----VFEINMKVA 78
Cdd:COG0566 1 MTSPSNPRVKDLRKLRDKKYREEEGLFLAEGRHAVEEALKAGREIEELLVTEGALDRlAELLALAKAagipVYEVSREVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 79 ESLSGTVTPQGFFAIIEKPQY--------DISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLR 150
Cdd:COG0566 81 DKLSGTETHQGVLAVVRPPEYadledllaEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 151 ASQGSVFHLPVM-TQDLDTFITQF---NGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYG 226
Cdd:COG0566 161 ASAGALFHVPVArVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMAG 240
|
250
....*....|....*...
gi 446357525 227 KAESLNVAIAGSILLYHL 244
Cdd:COG0566 241 GVESLNVAVAAAILLYEA 258
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-244 |
3.35e-62 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 191.49 E-value: 3.35e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQD-LDTFITQF---NGPVYGTAL 182
Cdd:cd18095 2 VLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDdLEELLEELkeaGYKVVAADL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446357525 183 ENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
Cdd:cd18095 82 DGGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
107-242 |
2.31e-43 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 143.44 E-value: 2.31e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIM-EKGTTDPYQDKVLRASQGSVFHLPVMT-QDLDTFITQF---NGPVYGTA 181
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADGLILvEPRSADPYNPKAIRASAGALFHLPLVVvDNLEEALKDLkeaGYAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446357525 182 LeNAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:pfam00588 83 L-GGKSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
29-245 |
2.73e-33 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 120.53 E-value: 2.73e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 29 LALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQI-IAYAQEV--FEINMKVAESLSGTVTPQGFFAIIEKPQY------ 99
Cdd:TIGR00186 1 QEYLYGKNAVLEALLNQQRVFILKGLESKRLKKLIqLAKKQGIniQLVDRQKLDQLTKGGNHQGIAAKVKPILYkdlndl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 100 -DISKAQQ---VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQD-LDTFIT--- 171
Cdd:TIGR00186 81 yKTAKSKKqpfLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTnLSRTITklk 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446357525 172 QFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245
Cdd:TIGR00186 161 ESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIK 234
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
108-242 |
9.75e-14 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 68.10 E-value: 9.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 108 LLIDRVQDPGNLGTLIRTADAAG---MDAVIMEKgttdpyQDKVLR-ASQGSVFHLPVMT-QDLDTFITQFNG---PVYG 179
Cdd:PRK11081 22 VCMEQVHKPHNVSAIIRTADAVGvheVHAVWPGS------RMRTMGsTAAGSNSWVQVKThRTIGDAVAHLKGqgmQILA 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446357525 180 TAL-ENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:PRK11081 96 THLsDTAVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILY 159
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
32-96 |
4.54e-11 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 57.16 E-value: 4.54e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 32 IEGVHLIEEAYQSGIVITQLFAIEPARLD-QQIIAYAQE----VFEINMKVAESLSGTVTPQGFFAIIEK 96
Cdd:smart00967 1 IEGRHAVEEALKSGRRIKELYLTEGRAERlKELLKLAKErgikVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
4-244 |
5.87e-86 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 256.28 E-value: 5.87e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 4 ITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLD-QQIIAYAQE----VFEINMKVA 78
Cdd:COG0566 1 MTSPSNPRVKDLRKLRDKKYREEEGLFLAEGRHAVEEALKAGREIEELLVTEGALDRlAELLALAKAagipVYEVSREVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 79 ESLSGTVTPQGFFAIIEKPQY--------DISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLR 150
Cdd:COG0566 81 DKLSGTETHQGVLAVVRPPEYadledllaEAGEPPLLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKVVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 151 ASQGSVFHLPVM-TQDLDTFITQF---NGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYG 226
Cdd:COG0566 161 ASAGALFHVPVArVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPMAG 240
|
250
....*....|....*...
gi 446357525 227 KAESLNVAIAGSILLYHL 244
Cdd:COG0566 241 GVESLNVAVAAAILLYEA 258
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-244 |
3.35e-62 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 191.49 E-value: 3.35e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQD-LDTFITQF---NGPVYGTAL 182
Cdd:cd18095 2 VLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDdLEELLEELkeaGYKVVAADL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446357525 183 ENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
Cdd:cd18095 82 DGGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-244 |
1.26e-44 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 146.53 E-value: 1.26e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQDLDTFITQFNG--PVYGTALEN 184
Cdd:cd18109 2 TLALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIHYTDLPALLAELKKafPVYGADLDG 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446357525 185 AvAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGK-AESLNVAIAGSILLYHL 244
Cdd:cd18109 82 E-NLYEFTLPEKGILVMGNEGHGISPEVLKLLTHRLTIPRYGKgAESLNVAVATAILLSEF 141
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
107-242 |
2.31e-43 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 143.44 E-value: 2.31e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIM-EKGTTDPYQDKVLRASQGSVFHLPVMT-QDLDTFITQF---NGPVYGTA 181
Cdd:pfam00588 3 VVVLDNIQDPGNLGAIIRTAAAFGADGLILvEPRSADPYNPKAIRASAGALFHLPLVVvDNLEEALKDLkeaGYAVVATS 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446357525 182 LeNAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:pfam00588 83 L-GGKSLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
107-244 |
9.00e-38 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 129.04 E-value: 9.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV-MTQDLDTFITQF---NGPVYGTAL 182
Cdd:cd18103 2 LLILDGITDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASAGALEHLPIaRVTNLARALEELkeaGFWIYGADG 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446357525 183 ENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
Cdd:cd18103 82 EAEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIILYEI 143
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-242 |
1.06e-36 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 126.54 E-value: 1.06e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMT---QDLDTFITQFNGPVYGTALE 183
Cdd:cd18104 2 ILVLEGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASLGAVFTLPVAEassEETLAWLKENKIRILATTPK 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 446357525 184 NAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:cd18104 82 AEKLYYEADLRGPIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLY 140
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
29-245 |
2.73e-33 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 120.53 E-value: 2.73e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 29 LALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQI-IAYAQEV--FEINMKVAESLSGTVTPQGFFAIIEKPQY------ 99
Cdd:TIGR00186 1 QEYLYGKNAVLEALLNQQRVFILKGLESKRLKKLIqLAKKQGIniQLVDRQKLDQLTKGGNHQGIAAKVKPILYkdlndl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 100 -DISKAQQ---VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQD-LDTFIT--- 171
Cdd:TIGR00186 81 yKTAKSKKqpfLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTnLSRTITklk 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446357525 172 QFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLK 245
Cdd:TIGR00186 161 ESGFWTVGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIK 234
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-244 |
5.73e-33 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 116.94 E-value: 5.73e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLP-VMTQDLDTFITQF---NGPVYGTAL 182
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPyERVDNFEEYLKSLkeeGYPLIGLEL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446357525 183 ENA-VAYKEVTSSDS--FALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
Cdd:cd18082 81 TDGsIPLSEFKFKKPkkIALIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
107-242 |
3.63e-29 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 106.95 E-value: 3.63e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMtQDLD-TFITQFNGP-----VYG 179
Cdd:cd18106 1 LTVIcDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPIY-GNLSwDDIPNYLPDdskvfLAD 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446357525 180 TALENAVAYKEVTSSDSFALLLGNEGEGVNPE--LLAHTT--QNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:cd18106 80 NNLPVQPYDSIDYCSGPIVLVIGGETHGVSPEayKLAHSTggSRVHIPLANGVDSLNSAVAASILLF 146
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
107-242 |
3.52e-25 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 96.69 E-value: 3.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVM----TQDLDTFI----TQFNG-PV 177
Cdd:cd18107 2 VVLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLPIVrvpsNRELEDWVearkARGTPlQL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446357525 178 YGTALENAVAYKEVTSSDSFALLLGNEGEGVNP---ELLAHTTQnliIPIYGKAESLNVAIAGSILLY 242
Cdd:cd18107 82 VGTDEHGDHQIADHDFTRPTLLLIGNETAGLSAawrELCDETVS---IPMAGSASSLNAACAASIFLY 146
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
107-244 |
5.05e-23 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 91.43 E-value: 5.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVM-TQDLDTFIT--QFNG-PVYGTAL 182
Cdd:cd18105 2 WLLLDEITDPQNLGAILRSAYFLGVDGVVVSSKNSAPLSPVVSKASAGALELMPIYsVDNLASFLKssKENGwKVVGTSA 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446357525 183 E-NAVAYKEVTSSDSFA---------LLLGNEGEGVNPELLAHTTQNLIIPIYGKAE-----SLNVAIAGSILLYHL 244
Cdd:cd18105 82 PpSASSDKKTIPANELSelllekptiLVLGNEGRGLRTNIKNLCDYLVSIPGGRSAEnpgvdSLNVSVAAGILLHSL 158
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
92-245 |
1.05e-22 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 90.60 E-value: 1.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 92 AIIEKPQYDIskaqqVLLIDRVQDPGNLGTLIRTADAAGMDAV--IMEKGTTDPYQdkvlRASQGSVFHLPVMT-QDLDT 168
Cdd:cd18092 8 EVLARRTRDL-----TVVLENVHDPHNASAVLRTCDAFGVQDVhvIEPKNKFKKNR----GVAMGADKWLDVHRhDSTEE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 169 FITQF--NGP-VYGTAL-ENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
Cdd:cd18092 79 CLAALkeQGYrIVATSLsPDAVPLDELDYTRPTALVFGNEKDGVSEEALAAADERVYIPMYGFVESLNVSVAAAIILYEL 158
|
.
gi 446357525 245 K 245
Cdd:cd18092 159 Q 159
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-244 |
4.12e-21 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 86.08 E-value: 4.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMT-QDLDTFITQFNGPVYG-TALE- 183
Cdd:cd18097 2 VVVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWEHfEDTLEAVRALKARGYTiIALEt 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446357525 184 --NAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244
Cdd:cd18097 82 teNSVPLHEARLPRPLALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
107-243 |
3.59e-15 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 69.94 E-value: 3.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIM-EKGTTDPYqdkvlrASQGSVFHLPVM----TQDLDTFITQFNGPVYGT- 180
Cdd:cd18096 2 YLVLHNVAKRHNIGTIVRSANAFGVKEVHLvGRRKFNPF------GAMGTDRHVKFRhfdtLAEAKEYLKERGIRLVGVe 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446357525 181 ALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKA-ESLNVAIAGSILLYH 243
Cdd:cd18096 76 IVPGAEPIETHPFPGDTAFVLGNEGTGLSDEQLAICDGFVYIPQYGSGtASLNVSVAASIVLHH 139
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
107-242 |
3.99e-15 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 70.20 E-value: 3.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGMDAVIM-EKGTTDPYQDKVLRASQGSVFHLPVM---TQDLDTFITQFNGPVYGTAL 182
Cdd:cd18108 2 VVVLDGVRIVGNIGAIVRTSLALGAAGIVLvDSDLATVADRRLLRASRGYVFSLPVVladREEAVAFLRDNDIPLMTLDA 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446357525 183 ENAVAYKEVTS-SDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:cd18108 82 DGDVPVKELGDrPDRLALVFGSEKGGPSGLFEEAAAGTVSIPMSSSTESLNVSVSAGIALH 142
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
108-242 |
9.75e-14 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 68.10 E-value: 9.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 108 LLIDRVQDPGNLGTLIRTADAAG---MDAVIMEKgttdpyQDKVLR-ASQGSVFHLPVMT-QDLDTFITQFNG---PVYG 179
Cdd:PRK11081 22 VCMEQVHKPHNVSAIIRTADAVGvheVHAVWPGS------RMRTMGsTAAGSNSWVQVKThRTIGDAVAHLKGqgmQILA 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446357525 180 TAL-ENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:PRK11081 96 THLsDTAVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILY 159
|
|
| SpoU_sub_bind |
pfam08032 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
31-98 |
8.23e-13 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 429793 [Multi-domain] Cd Length: 74 Bit Score: 61.87 E-value: 8.23e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446357525 31 LIEGVHLIEEAYQSGIVITQLFAIEPARLD--QQIIAYAQE----VFEINMKVAESLSGTVTPQGFFAIIEKPQ 98
Cdd:pfam08032 1 LIYGRHAVLEALKSGPEIKKLYLTEGRRDPrlKELLKLAKErgikVEEVDRKKLDKLSGTANHQGVVAEVKPYE 74
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
37-242 |
6.14e-12 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 63.45 E-value: 6.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 37 LIEEAYQSGIVITQLfaiepAR--LD--------QQIIAYAQEVFEINMK-VAESLSGTVTPqgFFaiiekpqydiskaq 105
Cdd:PRK11181 39 LINELEAQGIVIQLA-----NRqtLDekaegavhQGIIARVKPGRQLQENdLPDLLASLEQP--FL-------------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 106 qvLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVM--TQDLDT--FITQFNGPVYGTA 181
Cdd:PRK11181 98 --LILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIrvTNLARTmrMLQEKNIWIVGTA 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446357525 182 LEnavAYKEVTSSD---SFALLLGNEGEGVNpELLAHTTQNLI-IPIYGKAESLNVAIAGSILLY 242
Cdd:PRK11181 176 GE---ADHTLYQSKltgPLALVMGAEGEGMR-RLTREHCDELIsIPMAGSVSSLNVSVATGICLF 236
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
109-242 |
1.49e-11 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 60.24 E-value: 1.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 109 LIDRvqdPGNLGTLIRTADAAGMDAVIM-EKGTTDPYQDKVLRASqgSVFHLPVMT---QDLDTFITQFNGPVYG-TALE 183
Cdd:cd18091 7 LIDK---PPNLGGLCRTCEIFGVSKLVLpNLAVVEDKQFKALSVS--AEKWLPIEEvkpEDLLPYLKEKKQEGYTiVGLE 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446357525 184 ---NAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:cd18091 82 qtaNSVSLHDFQFPKKTVLVLGNEKEGIPAELLSLLDVCVEIPQLGVIRSLNVHVSGAIAIY 143
|
|
| SpoU_sub_bind |
smart00967 |
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose ... |
32-96 |
4.54e-11 |
|
RNA 2'-O ribose methyltransferase substrate binding; This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Pssm-ID: 214943 [Multi-domain] Cd Length: 70 Bit Score: 57.16 E-value: 4.54e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 32 IEGVHLIEEAYQSGIVITQLFAIEPARLD-QQIIAYAQE----VFEINMKVAESLSGTVTPQGFFAIIEK 96
Cdd:smart00967 1 IEGRHAVEEALKSGRRIKELYLTEGRAERlKELLKLAKErgikVIEVSKKELDKLSGTANHQGVVAVVKP 70
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
110-242 |
8.88e-11 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 58.04 E-value: 8.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 110 IDRVQDPGNLGTLIRTADAAGMDAVI-------MEKGTTDpyqdkvlraSQGSVFHLPVM-TQDLDTFitqFNGPVYGTA 181
Cdd:cd18098 5 IENPKTPKNVGTLWRAAGCLGASFVFtigarykRRKQSTD---------TSKAWRHIPLFhYDDLEDL---AEPLPFGAV 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446357525 182 L------ENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGkaeSLNVAIAGSILLY 242
Cdd:cd18098 73 LvaveltEGATPLPDFKHPDRAVYLLGPEDGGLPQEVLARCHHVVYLPTRG---SLNVAVAGSIVLY 136
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
116-242 |
9.28e-09 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 52.84 E-value: 9.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 116 PGNLGTLIRTADA----------------------AGMDavimekgttdpYQDKVlrasqgSVFHLPvmtqDLDTFITQF 173
Cdd:cd18094 10 PQNTGNIARTCAAtgarlhlieplgfslddkrlkrAGLD-----------YWDHV------DLTVHD----SWEAFLEAL 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446357525 174 -NGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLI-IPIYGKAESLNVAIAGSILLY 242
Cdd:cd18094 69 pPGRLFLFTTKGTKPYTDFDFKPGDYLVFGRESTGLPEEILDAFPDRRLrIPMRPKVRSLNLSNSVAIVLY 139
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
107-241 |
2.05e-06 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 47.85 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 107 VLLIDRVQDPGNLGTLIRTADAAGM------DAVIMEKGTTdpyqdkvLRASQGSVFHL-PVMTQDLDTFITQFNGPVY- 178
Cdd:PRK10864 200 VLALEDVGNPHNLGGIMRSCAHFGVkgvvvqDAALLESGAA-------IRTAEGGAEHVqPITGDSFVDVLDDFRQAGYt 272
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446357525 179 --------GTALENAVAYKEVTssdsfaLLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILL 241
Cdd:PRK10864 273 ivttsshkGTPLFKASLPAKMV------LVLGQEYDGLSDAARQQGDLSVSIDGTGNVESLNVSVATGVLL 337
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
116-242 |
7.88e-06 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 44.64 E-value: 7.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446357525 116 PGNLGTLIRTA------------------DA----AGMDavimekgttdpYQDKVlrasqgSVFHLPvmtqDLDTFITQF 173
Cdd:COG0219 12 PQNTGNIIRLCaatgarlhlieplgfsldDKklkrAGLD-----------YWELV------DLTVHD----SWEAFLEAL 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446357525 174 -NGPVYgtALEN--AVAYKEVTSSDSFALLLGNEGEGVNPELLA-HTTQNLIIPIYGKAESLNVAIAGSILLY 242
Cdd:COG0219 71 pGGRLF--LFTTkgTKPYTDVDYQPGDVLLFGRETAGLPEEVLAaPADQRLRIPMRPGVRSLNLSNAVAIVLY 141
|
|
| |
