|
Name |
Accession |
Description |
Interval |
E-value |
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
1-436 |
0e+00 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 816.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 1 MESTEKKEALMRIKAASKNELYRKLFDQYGTDYYYVVDESVKRNIPFFWKKNYEMLVAFPEDKQEEVNEGTAQFHEQLMD 80
Cdd:PRK11889 1 MESTEKKEALMRIKAASKNELYRKLFDQYGTDYYYVVDESVKRNIPFFWKKNYEMLVAFPEDKQEEVNEGTAQFHEQLMD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 81 VVNDSSEQIVKANGIQSVLHNLENVTTPMSYAAMQTGNSEEWARKKEKLLKLFEKGIVVVKQTEETKVTKKQKAVKKVVP 160
Cdd:PRK11889 81 VVNDPSEQIVKANGIQSVLHNLENVTTPMSYAAMQTGNSEEWARKKEKLLKLFEKGIVVVKQTEETKVTKKQKAVKKVVP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 161 VKKEEVVVKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMTSHFNTENVFEKE 240
Cdd:PRK11889 161 VKKEEVVVKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTENVFEKE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320
Cdd:PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIP 400
Cdd:PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIP 400
|
410 420 430
....*....|....*....|....*....|....*.
gi 446368345 401 AVSSAPIVLMTDGQDVKKNIHIATAEQLAKQMLQTS 436
Cdd:PRK11889 401 AVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQTS 436
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
166-436 |
1.03e-169 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 476.55 E-value: 1.03e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 166 VVVKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEeVIEYILEDMTSHFNTENVFEKEVQTIA 245
Cdd:PRK06731 1 MVVKKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMITEE-VIEYILEDMSSHFNTENVFEKEVQTIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 246 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYIL 325
Cdd:PRK06731 80 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 326 IDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSA 405
Cdd:PRK06731 160 IDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSA 239
|
250 260 270
....*....|....*....|....*....|.
gi 446368345 406 PIVLMTDGQDVKKNIHIATAEQLAKQMLQTS 436
Cdd:PRK06731 240 PIVLMTDGQDVKKNIHIATAEHLAKQMLQTS 270
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
242-432 |
2.67e-80 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 245.92 E-value: 2.67e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEear 320
Cdd:cd17873 1 RVIALVGPTGVGKTTTLAKLAARYVLKKgKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPEDLADALERLSD--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIP 400
Cdd:cd17873 78 RDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTKAKDLKEIIERFSPLGYRGLILTKLDETTSLGSVLSVL 157
|
170 180 190
....*....|....*....|....*....|..
gi 446368345 401 AVSSAPIVLMTDGQDVKKNIHIATAEQLAKQM 432
Cdd:cd17873 158 AESQLPVSYVTTGQRVPEDIEVASPLRLARLL 189
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
177-434 |
4.90e-76 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 241.31 E-value: 4.90e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 177 PFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFEnatmitEEEVIEYILEDMTSHFNT-ENVFEKEVQTIALIGPTGVGKT 255
Cdd:COG1419 105 PPELAELLERLLEAGVSPELARELLEKLPEDLS------AEEAWRALLEALARRLPVaEDPLLDEGGVIALVGPTGVGKT 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 256 TTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEearVDYILIDTAGKNYR 334
Cdd:COG1419 179 TTIAKLAARFVlRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEALERLRD---KDLVLIDTAGRSPR 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 335 ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414
Cdd:COG1419 256 DPELIEELKALLDAGPPIEVYLVLSATTKYEDLKEIVEAFSSLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQ 335
|
250 260
....*....|....*....|
gi 446368345 415 DVKKNIHIATAEQLAKQMLQ 434
Cdd:COG1419 336 RVPEDIEVADPERLARLLLG 355
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
10-330 |
2.14e-60 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 197.94 E-value: 2.14e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 10 LMRIKAASKNELYRKLFDQYGTDYYYVVDESVKRniPFFWKKNYEMLVAFPEDKQEevnegtaqfheqlmdvvNDSSEQI 89
Cdd:TIGR03499 3 IKKFTAPTMREALKKVKEELGPDAVILSTRKVRK--GLFGKKFVEVTAAIDEEEAA-----------------AASAEEE 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 90 VKANGIQSVLHNLENVTTPMSYAAMQTGNSEEWARKKEKLLKL--FEKGIVVVKQTEETKVTKKQKAVKkvvpvkkeevv 167
Cdd:TIGR03499 64 ASKALEQADPKPLSATAEPLELPAPQEEPAAPAAQAAEPLLPEeeLRKELEALRELLERLLAGLAWLQR----------- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 168 vkkekqesvPFIIQKVIRMLEQNDVEQYFIHAYAEKLKvKFENATMITEEeVIEYiLEDMTSHFNTENVFEKEVQTIALI 247
Cdd:TIGR03499 133 ---------PPERAKLYERLLEAGVSEELARELLEKLP-EDADAEDAWRW-LREA-LEGMLPVKPEEDPILEQGGVIALV 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 248 GPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEearVDYIL 325
Cdd:TIGR03499 201 GPTGVGKTTTLAKLAARFalEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKELREALDRLRD---KDLIL 277
|
....*
gi 446368345 326 IDTAG 330
Cdd:TIGR03499 278 IDTAG 282
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
217-434 |
4.59e-50 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 175.08 E-value: 4.59e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 217 EEVIEYILEDMTSHFNTE-----NVFEKEVQT-----------IALIGPTGVGKTTTLAKMAWQF---HGKKKtVGFITT 277
Cdd:PRK05703 181 EKLLKLLLEHMPPRERTAwryllELLANMIPVrvedilkqggvVALVGPTGVGKTTTLAKLAARYallYGKKK-VALITL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 278 DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKeeaRVDYILIDTAGKNYRASETVEEMIETM-GQVEPDYICL 356
Cdd:PRK05703 260 DTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR---DCDVILIDTAGRSQRDKRLIEELKALIeFSGEPIDVYL 336
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446368345 357 TLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEQLAKQMLQ 434
Cdd:PRK05703 337 VLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLG 414
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
242-433 |
1.31e-47 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 161.81 E-value: 1.31e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFK 316
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKLKgGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGegaDPVAVaKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 317 EEaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGE 395
Cdd:smart00962 82 AR-GYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEV-LLVSDATTGQDAVEQAKAFNEaLGLTGIILTKLDGTAKGGA 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 446368345 396 LLKIPAVSSAPIVLMTDGQDVkKNIHIATAEQLAKQML 433
Cdd:smart00962 160 ALSIAAETGLPIKFIGTGEKV-PDLEPFDPERFVSRLL 196
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
184-435 |
8.59e-43 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 155.28 E-value: 8.59e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 184 IRMLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMTSHFNTENVFE-KEVQTIALIGPTGVGKTTTLAKMA 262
Cdd:PRK12726 148 VKFLKGRGISDTYVADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDlSNHRIISLIGQTGVGKTTTLVKLG 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 263 WQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEM 342
Cdd:PRK12726 228 WQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEI 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 343 IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNIHI 422
Cdd:PRK12726 308 SAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFR 387
|
250
....*....|...
gi 446368345 423 ATAEQLAKQMLQT 435
Cdd:PRK12726 388 PKSRWLAERFVGT 400
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
244-429 |
2.47e-35 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 129.20 E-value: 2.47e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMT-RALTYFKEEa 319
Cdd:pfam00448 3 ILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKtgaDPAAVAfDAVEKAKAE- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKI 399
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|
gi 446368345 400 PAVSSAPIVLMTDGQDVkKNIHIATAEQLA 429
Cdd:pfam00448 162 VAETGKPIKFIGVGEKI-DDLEPFDPERFV 190
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
244-414 |
1.25e-30 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 116.70 E-value: 1.25e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAA----MTRALTYFKEEA 319
Cdd:cd03115 3 ILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDpasiAQEAVEKAKLEG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 320 RvDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDmIEIITNFKD-IHIDGIVFTKFDETASSGELLK 398
Cdd:cd03115 83 Y-DVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEA-LSQAKAFNEaVGLTGVILTKLDGTAKGGAALS 160
|
170
....*....|....*.
gi 446368345 399 IPAVSSAPIVLMTDGQ 414
Cdd:cd03115 161 IVAETKKPIKFIGVGE 176
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
222-436 |
1.65e-27 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 114.29 E-value: 1.65e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 222 YILEDMTSHFNTE-------NVFEKEVQTI-------------ALIGPTGVGKTTTLAKMAWQF---HGKKKtVGFITTD 278
Cdd:PRK06995 217 MLVDNLPEGDDAEaaldwvqSALAKNLPVLdsedalldrggvfALMGPTGVGKTTTTAKLAARCvmrHGASK-VALLTTD 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 279 HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVdyiLIDTAGKNYRaSETVEEMIETMGQVEPDyI--CL 356
Cdd:PRK06995 296 SYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIV---LIDTIGMSQR-DRMVSEQIAMLHGAGAP-VkrLL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 357 TLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEQLAKQMLQTS 436
Cdd:PRK06995 371 LLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
244-428 |
1.03e-26 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 112.39 E-value: 1.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 244 IALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGfevIAVRdEAAMTRALTYFKEEARv 321
Cdd:PRK12727 353 IALVGPTGAGKTTTIAKLAQRFAAQHapRDVALVTTDTQRVGGREQLHSYGRQLG---IAVH-EADSAESLLDLLERLR- 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 322 DY--ILIDTAGKNYRASETVEEM--IETMGQVEPdyiCLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELL 397
Cdd:PRK12727 428 DYklVLIDTAGMGQRDRALAAQLnwLRAARQVTS---LLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSAL 504
|
170 180 190
....*....|....*....|....*....|.
gi 446368345 398 KIPAVSSAPIVLMTDGQDVKKNIHIATAEQL 428
Cdd:PRK12727 505 SVVVDHQMPITWVTDGQRVPDDLHRANAASL 535
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
180-423 |
9.60e-26 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 108.07 E-value: 9.60e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 180 IQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATM----ITEEEVIEYILEDMTSHFNTENVFEKEVqtIALIGPTGVGKT 255
Cdd:PRK12723 111 ILKIEDILRENDFSESYIKDINEFIKKEFSLSDLddydKVRDSVIIYIAKTIKCSGSIIDNLKKRV--FILVGPTGVGKT 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 256 TTLAKMAwQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEearVDYILIDTAG 330
Cdd:PRK12723 189 TTIAKLA-AIYGinsddKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKD---FDLVLVDTIG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 331 KNYRASETVEEMIETMGQVEPDY-ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVL 409
Cdd:PRK12723 265 KSPKDFMKLAEMKELLNACGRDAeFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSY 344
|
250
....*....|....
gi 446368345 410 MTDGQDVKKNIHIA 423
Cdd:PRK12723 345 VTDGQIVPHNISIA 358
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
245-435 |
1.54e-22 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 100.65 E-value: 1.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 245 ALIGPTGVGKTTTLAKMAWQF---HGKKKtVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEarv 321
Cdd:PRK14723 189 ALVGPTGVGKTTTTAKLAARCvarEGADQ-LALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK--- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKdiH-----IDGIVFTKFDETASSGEL 396
Cdd:PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR--HgagedVDGCIITKLDEATHLGPA 342
|
170 180 190
....*....|....*....|....*....|....*....
gi 446368345 397 LKIPAVSSAPIVLMTDGQDVKKNIHIATAEQLAKQMLQT 435
Cdd:PRK14723 343 LDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFAT 381
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
245-436 |
2.34e-22 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 98.48 E-value: 2.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 245 ALIGPTGVGKTTTLAKMAWQF---HGKKKtVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321
Cdd:PRK14721 195 ALIGPTGVGKTTTTAKLAARAvirHGADK-VALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHMV 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 322 dyiLIDTAGKNYRASETVEE--MIETMGQVEPDYICLTLSASMKSKDmiEIITNFKDIHIDGIVFTKFDETASSGELLKi 399
Cdd:PRK14721 274 ---LIDTVGMSQRDQMLAEQiaMLSQCGTQVKHLLLLNATSSGDTLD--EVISAYQGHGIHGCIITKVDEAASLGIALD- 347
|
170 180 190
....*....|....*....|....*....|....*....
gi 446368345 400 pAVSSAPIVL--MTDGQDVKKNIHIATAEQLAKQMLQTS 436
Cdd:PRK14721 348 -AVIRRKLVLhyVTNGQKVPEDLHEANSRYLLHRIFKPS 385
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
236-416 |
1.28e-20 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 93.35 E-value: 1.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 236 VFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE----AAMTRA 311
Cdd:PRK00771 90 VLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNkdavEIAKEG 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 312 LTYFKEearVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMkSKDMIEIITNFKD-IHIDGIVFTKFDET 390
Cdd:PRK00771 170 LEKFKK---ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATI-GQQAKNQAKAFHEaVGIGGIIITKLDGT 245
|
170 180
....*....|....*....|....*.
gi 446368345 391 ASSGELLKIPAVSSAPIVLMTDGQDV 416
Cdd:PRK00771 246 AKGGGALSAVAETGAPIKFIGTGEKI 271
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
244-407 |
1.89e-20 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 88.42 E-value: 1.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA----AMTRALTYFKEEA 319
Cdd:cd18539 3 ILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQspvdIAKRALEKAKEEG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 320 rVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLK 398
Cdd:cd18539 83 -FDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDA-MTGQDAVNVAKAFNErLGLTGVVLTKLDGDARGGAALS 160
|
....*....
gi 446368345 399 IPAVSSAPI 407
Cdd:cd18539 161 IRHVTGKPI 169
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
126-415 |
3.82e-19 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 88.11 E-value: 3.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 126 KEKLLKLFEKGIVVVKQTEETKVTKKQKAVKKVVPVKKEEVVVKKEKQESVPFI---IQKVIRMLE----QNDVEQYFIH 198
Cdd:PRK14974 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKekdIEDLLEELElellESDVALEVAE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 199 AYAEKLKVK--------FENATMITEEEVIEYILEDMTSHFNTENVFEKEVQ----TIALIGPTGVGKTTTLAKMAWQFH 266
Cdd:PRK14974 86 EILESLKEKlvgkkvkrGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSKgkpvVIVFVGVNGTGKTTTIAKLAYYLK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 267 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMT-RALTYFKeeAR-VDYILIDTAGKNYRASETVEE 341
Cdd:PRK14974 166 KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKygaDPAAVAyDAIEHAK--ARgIDVVLIDTAGRMHTDANLMDE 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446368345 342 MIETMGQVEPDYICLTLSAsMKSKDMIEIITNF-KDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQD 415
Cdd:PRK14974 244 LKKIVRVTKPDLVIFVGDA-LAGNDAVEQAREFnEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQG 317
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
231-430 |
1.54e-18 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 86.70 E-value: 1.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 231 FNTENVFEKEVQTIALIGPTGVGKTTTLAKMA----WQFHGKKktVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA 306
Cdd:PRK14722 127 LDSEDALMERGGVFALMGPTGVGKTTTTAKLAarcvMRFGASK--VALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 307 AMTRALTYFKEEARVdyiLIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDI--------- 377
Cdd:PRK14722 205 DLQLALAELRNKHMV---LIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAagqpkaalp 281
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446368345 378 HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEQLAK 430
Cdd:PRK14722 282 DLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLK 334
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
242-430 |
4.39e-18 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 85.79 E-value: 4.39e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 242 QTIALIGPTGVGKTTTLAKMAWQ-FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDeaamtraLTYFKEEAR 320
Cdd:PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKyFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-------IKKFKETLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 321 VD---YILIDTAGKNYRASETVEEM---IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 394
Cdd:PRK12724 297 RDgseLILIDTAGYSHRNLEQLERMqsfYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376
|
170 180 190
....*....|....*....|....*....|....*.
gi 446368345 395 ELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEQLAK 430
Cdd:PRK12724 377 SFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAE 412
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
244-414 |
8.83e-17 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 78.38 E-value: 8.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMT-RALTYFKEEA 319
Cdd:cd17874 3 ILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNegaDPAAVAfDAIQAAKARG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 320 rVDYILIDTAGKNYRASETVEEM------IETMGQVEPDYICLTLSASMkSKDMIEIITNFKD-IHIDGIVFTKFDETAS 392
Cdd:cd17874 83 -IDVVLIDTAGRLHTKKNLMEELkkikrvIKKKDPEAPHEVLLVLDATT-GQNALEQAKEFNEaVGLTGIILTKLDGTAK 160
|
170 180
....*....|....*....|..
gi 446368345 393 SGELLKIPAVSSAPIVLMTDGQ 414
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGE 182
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
242-416 |
1.28e-16 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 77.62 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA----AMTRALTYFKE 317
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKdpvkIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 318 EaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETASSGEL 396
Cdd:cd17875 81 E-KFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQ-AKAFKEaVDIGSVIITKLDGHAKGGGA 158
|
170 180
....*....|....*....|
gi 446368345 397 LKIPAVSSAPIVLMTDGQDV 416
Cdd:cd17875 159 LSAVAATGAPIIFIGTGEHI 178
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
242-407 |
1.32e-14 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 75.06 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE----AAMTRALTYFKE 317
Cdd:COG0541 101 TVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEEDGkdpvDIAKRALEYAKK 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 318 EARvDYILIDTAGknyRASETvEEMIETMGQ----VEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETAS 392
Cdd:COG0541 181 NGY-DVVIVDTAG---RLHID-EELMDELKAikaaVNPDETLLVVDA-MTGQDAVNVAKAFNEaLGLTGVILTKLDGDAR 254
|
170
....*....|....*
gi 446368345 393 SGELLKIPAVSSAPI 407
Cdd:COG0541 255 GGAALSIRAVTGKPI 269
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
243-418 |
9.44e-13 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 66.87 E-value: 9.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMTRALTYFKEEA 319
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKgygKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNF----------KDIH-IDGIVFTKFD 388
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLV-LFVGEALVGNDAVDQLKKFnqaladyspsDNPRlIDGIVLTKFD 160
|
170 180 190
....*....|....*....|....*....|....*
gi 446368345 389 eTASS--GELLKIPAVSSAPIVLMTDGQ---DVKK 418
Cdd:cd17876 161 -TIDDkvGAALSMVYATGQPIVFVGTGQtytDLKK 194
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
244-433 |
5.91e-10 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 61.00 E-value: 5.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA----AMTRALTYFKEEa 319
Cdd:TIGR01425 103 IMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESdpvkIASEGVEKFRKE- 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEiITNFKD-IHIDGIVFTKFDETASSGELLK 398
Cdd:TIGR01425 182 KFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQ-AKAFKDsVEVGSVIITKLDGHAKGGGALS 260
|
170 180 190
....*....|....*....|....*....|....*
gi 446368345 399 IPAVSSAPIVLMTDGQDVkKNIHIATAEQLAKQML 433
Cdd:TIGR01425 261 AVAATKSPIIFIGTGEHV-DEFEIFDAEPFVSKLL 294
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
202-400 |
8.29e-10 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 59.65 E-value: 8.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 202 EKLKVKFENATMITEEEVIEYILEDMTSHFNTE----NVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277
Cdd:COG0552 57 EELRERVKRKKLKDPEELKEALKEELLEILDPVdkplAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAG 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 278 DHSRIGTVQQLQDYVKTIGFEVIAVR---DEAA-MTRALTYFKEEaRVDYILIDTAG-----KNYrasetVEEM------ 342
Cdd:COG0552 137 DTFRAAAIEQLEVWGERVGVPVIAQKegaDPAAvAFDAIQAAKAR-GADVVIIDTAGrlhnkKNL-----MEELkkikrv 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446368345 343 IETMGQVEPDYICLTLSASMkSKDMIEIITNFKD-IHIDGIVFTKFDETASSG------ELLKIP 400
Cdd:COG0552 211 IKKLDPDAPHEVLLVLDATT-GQNALSQAKVFNEaVGVTGIVLTKLDGTAKGGvvlaiaDELGIP 274
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
205-400 |
1.07e-09 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 59.34 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 205 KVKFENATmiTEEEV----IEYILEDMTSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280
Cdd:PRK10416 76 RVKRKNLK--DPEELkellKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 281 RIGTVQQLQDYVKTIGFEVIAVRDEA--------AMTRALtyfkeeAR-VDYILIDTAG----KNYRASEtVEEMIETMG 347
Cdd:PRK10416 154 RAAAIEQLQVWGERVGVPVIAQKEGAdpasvafdAIQAAK------ARgIDVLIIDTAGrlhnKTNLMEE-LKKIKRVIK 226
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446368345 348 QV---EPDYICLTLSASmkskdmieiiT--N-------FKD-IHIDGIVFTKFDETASSG------ELLKIP 400
Cdd:PRK10416 227 KAdpdAPHEVLLVLDAT----------TgqNalsqakaFHEaVGLTGIILTKLDGTAKGGvvfaiaDELGIP 288
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
242-389 |
2.25e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 2.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTyfkEEARV 321
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA---RKLKP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446368345 322 DYILIDTAGKNYRASETVEEMIETMGQVepdyicLTLSASMKSKDMIeIITNFKDIHIDGIVFTKFDE 389
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRL------LLLLKSEKNLTVI-LTTNDEKDLGPALLRRRFDR 140
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
244-346 |
3.57e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 40.98 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTvgFITTDHSRIgtvqqLQDYVKTIGFEVIAVRDEAAMtraltyfKEEARVDY 323
Cdd:cd00009 22 LLLYGPPGTGKTTLARAIANELFRPGAP--FLYLNASDL-----LEGLVVAELFGHFLVRLLFEL-------AEKAKPGV 87
|
90 100
....*....|....*....|....
gi 446368345 324 ILIDTAGKNYR-ASETVEEMIETM 346
Cdd:cd00009 88 LFIDEIDSLSRgAQNALLRVLETL 111
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
244-329 |
9.13e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.25 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSriGTVQQL-QDYVKTIGFEVIAVRDEAAMTRALT-YFKEEARV 321
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSG--TSPKDLlRALLRALGLPLSGRLSKEELLAALQqLLLALAVA 85
|
....*...
gi 446368345 322 DYILIDTA 329
Cdd:pfam13401 86 VVLIIDEA 93
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
242-285 |
3.45e-03 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 39.56 E-value: 3.45e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 446368345 242 QTIALIGPTGVGKTTTLAKMAWQFhgkKKTVGFITTDHSRIGTV 285
Cdd:PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVF---DPQSGRILIDGTDIRTV 402
|
|
| AAA_24 |
pfam13479 |
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins. |
242-349 |
9.98e-03 |
|
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.
Pssm-ID: 433243 Cd Length: 199 Bit Score: 37.31 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446368345 242 QTIALIGPTGVGKTTTLAKMawqfhgkKKTVgFITTDHSrigtvqqlQDYVKTIGFEVIAVRD-EAAMTRALTYFKEEAR 320
Cdd:pfam13479 3 LKILIYGPSGIGKTTFAKTL-------PKPL-FLDTEKG--------SKALDGDRFPDIVIRDsWQDFLDAIDELTAAEL 66
|
90 100 110
....*....|....*....|....*....|.
gi 446368345 321 VDY--ILIDTAGKnyrASETVEEMIETMGQV 349
Cdd:pfam13479 67 ADYktIVIDTVDW---LERLCLAYICKQNGK 94
|
|
| |
