|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
1-289 |
1.45e-163 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 455.92 E-value: 1.45e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 1 METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIENIQsIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGM 80
Cdd:PRK09636 4 ADAAAEFEPLRPHLLSVAYRMLGSVADAEDIVQEAWLRWNNADRAQ-IRDPRAWLTRVVTRLCLDRLRSARHRRETYVGP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 81 WLPEPLVEESDEPSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILEK 160
Cdd:PRK09636 83 WLPEPVVEELDDPLEAVVAAEDLSLALMLALERLSPLERAAFLLHDVFGVPFDEIASTLGRSPAACRQLASRARKHVRAA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 161 PKQSKLSTEKMAAYVEKFVSSLQCGDAEGMLEVLKTDAILKADGGGKVTTAIHPIYSADRIIRLFFGIAQRLTE--EYTV 238
Cdd:PRK09636 163 RPRFPVSDEEGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPggSTLV 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 446369300 239 DFKMVNGIPGVIVTINNKVTYVLSFAFEDEKISNIYMMVNPEKLMHLNVKI 289
Cdd:PRK09636 243 RLALVNGLPGFVTAEADGEPQTTALEVEDGKIVAIYDVRNPDKLTHLPLKI 293
|
|
| SigX4 |
TIGR02957 |
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of ... |
5-286 |
2.75e-160 |
|
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Pssm-ID: 132002 [Multi-domain] Cd Length: 281 Bit Score: 447.19 E-value: 2.75e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 5 QLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEnIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMWLPE 84
Cdd:TIGR02957 1 EEFEALRPLLFSLAYRMLGSVADAEDIVQETFLRWQEAD-RAQIENPKAYLTKVVTRRCIDVLRSARARREVYVGPWLPE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 85 PLVEESDEPSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILEKPKQS 164
Cdd:TIGR02957 80 PLLTTSADPAESVELAESLSMAYLLLLERLSPLERAVFVLREVFDYPYEEIASIVGKSEANCRQLVSRARRHLDARRPRF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 165 KLSTEKMAAYVEKFVSSLQCGDAEGMLEVLKTDAILKADGGGKVTTAIHPIYSADRIIRLFFGIAQRLTEEYTVDFKMVN 244
Cdd:TIGR02957 160 EVSREESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDPVDVN 239
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 446369300 245 GIPGVIVTINNKVTYVLSFAFEDEKISNIYMMVNPEKLMHLN 286
Cdd:TIGR02957 240 GQPAVLVRIDGKLAYVVTFAIEGGGIQNIYIVRNPEKLAHIG 281
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
4-160 |
2.25e-38 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 133.20 E-value: 2.25e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGmwL 82
Cdd:COG1595 20 EELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLwRKLDSFRGRGSFRAWLYRIARNLAIDHLRKRRRRRELLDE--L 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446369300 83 PEPLVEESDEPSESFVMKEsLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILEK 160
Cdd:COG1595 98 AEELPDEAADPEEALEAEE-LLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGTVKSRLSRARKKLREA 174
|
|
| sigI |
PRK09635 |
RNA polymerase sigma factor SigI; Provisional |
7-282 |
4.04e-33 |
|
RNA polymerase sigma factor SigI; Provisional
Pssm-ID: 182008 [Multi-domain] Cd Length: 290 Bit Score: 122.77 E-value: 4.04e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 7 YEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIEnIQSIENMKAYLCKMATNRSIDKLRSAA--HKRNVYVGMWLPE 84
Cdd:PRK09635 11 WRAHRAYLVDLAFRMVGDIGVAEDMVQEAFSRLLRAP-VGDIDDERGWLIVVTSRLCLDHIKSAStrRERPQDIAAWHDG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 85 PLVEESDEPSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILEKPKQS 164
Cdd:PRK09635 90 DASVSSVDPADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 165 KLSTEKMAAYVEKFVSSLQCGDAEGMLEVLKTdAILKADGGGKVTTAIHPIYSADRIIRLFFGIAQRLTEEytvdfkMVN 244
Cdd:PRK09635 170 SVEPAQHRVVTRAFIEACSNGDLDTLLEVLDP-GVAGEIDARKGVVVVGADRVGPTILRHWSHPATVLVAQ------PVC 242
|
250 260 270
....*....|....*....|....*....|....*...
gi 446369300 245 GIPGVIVTINNKVTYVLSFAFEDEKISNIYMMVNPEKL 282
Cdd:PRK09635 243 GQPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTL 280
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
4-160 |
8.17e-28 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 105.12 E-value: 8.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQSIENMKAYLCKMATNRSIDKLRsaaHKRNVYVGMWL 82
Cdd:TIGR02937 4 EELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLlEALDRFDPEGSFKAWLFRIARNLILDYLR---RKRRLRRELDL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446369300 83 PEPLVEESDEPSESFVMKESLSTAYlLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILEK 160
Cdd:TIGR02937 81 LEELLDSDPSPEEELEQEEEREALR-EALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRARKKLREL 157
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
2-200 |
1.28e-22 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 95.39 E-value: 1.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 2 ETEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFI----SLNNIENIQSienMKAYLCKMATNRSIDKLRSAAhKRNVY 77
Cdd:PRK08241 20 AFAALVEPHRRELLAHCYRMLGSVHDAEDAVQETLLrawrGYDRFEGRSS---LRTWLYRIATNVCLDALEGRA-RRPLP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 78 VGM------------------WLpEP-----LVEESDEPSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEE 134
Cdd:PRK08241 96 TDLgapaadpvdelverpevpWL-EPypdalLDPAAADPAARVVARESVRLAFVAALQHLPPRQRAVLILRDVLGWSAAE 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446369300 135 IASIVDKS--SVNcrKIFQRARKSILEK-----PKQSKLSTEKMAAYVEKFVSSLQCGDAEGMLEVLKTDAIL 200
Cdd:PRK08241 175 VAELLDTSvaAVN--SALQRARATLAERgpsaaDTLREPDDPEERALLARYVAAFEAYDVDALVALLTEDATW 245
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
4-137 |
8.68e-20 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 83.77 E-value: 8.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMWL 82
Cdd:TIGR02985 4 EQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLwENRETLEISESIKAYLFTIVKNRCLNYLRHKQVEEKYQEELAE 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 446369300 83 PEPLVEESDEPSESFVMKEsLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIAS 137
Cdd:TIGR02985 84 IEERELSEADPEEELEAKE-LEEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAE 137
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
4-157 |
3.52e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 80.48 E-value: 3.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQS--IENMKAYLCKMATNRSIDKLRSaaHKRNVYVGM 80
Cdd:PRK12542 12 EELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLyKNLEKLHSlnTQELKRYILRVAKNKAIDSYRK--NKRHETFLE 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446369300 81 WLPEPLVEESDEPSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSI 157
Cdd:PRK12542 90 EYERESIEAVDENIEEWEKRKMSEVQIDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARKRV 166
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
4-159 |
1.61e-17 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 78.09 E-value: 1.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFIS-LNNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMWL 82
Cdd:PRK11924 16 SELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRaWRKADLFNGKGSARTWLLTIARNVCYDLLRRRRREKAVLSDDAL 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446369300 83 PEPLVEESDEPSESFVMKESLStAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILE 159
Cdd:PRK11924 96 EPEFAETAETPEAALLAKDDLA-RIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSRLRRARQLLRE 171
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
4-155 |
1.62e-16 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 75.37 E-value: 1.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNiENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNvyvgMWLP 83
Cdd:PRK09639 6 EDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYR-SDFKGIENEKGWLIKSARNVAYNYLRSEKRRRA----RILG 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446369300 84 EPLVEESDE---PSESFVMKESLSTAYlLLLQQLSEVERIVFILREVfSYEYEEIASI--VDKSSVncRKIFQRARK 155
Cdd:PRK09639 81 EFQWQEVDNepsPEEIWIRKEEITKVQ-EVLAKMTERDRTVLLLRFS-GYSYKEIAEAlgIKESSV--GTTLARAKK 153
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
4-160 |
1.56e-15 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 72.92 E-value: 1.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQSIENMKAYLCKMATNRSIDKLRsaAHKRNVYVGM-- 80
Cdd:PRK09652 13 ALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAyRALHSFRGGAAFYTWLYRIARNTAINYLR--KQGRRPPASDvd 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 81 ------WLPEPLVEESDEPSESFV---MKESLSTAylllLQQLSEVERIVFILREV--FSyeYEEIASIVD------KSs 143
Cdd:PRK09652 91 aeeaedFDLADALRDISTPENELLsaeLEQRVRAA----IESLPEELRTAITLREIegLS--YEEIAEIMGcpigtvRS- 163
|
170
....*....|....*..
gi 446369300 144 vncrKIFqRARKSILEK 160
Cdd:PRK09652 164 ----RIF-RAREALRAK 175
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
4-160 |
1.67e-15 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 73.05 E-value: 1.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFIS-LNNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMWL 82
Cdd:PRK09640 29 EELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKvLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMDALSL 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446369300 83 pEPLVEESDEPSEsfvmKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILEK 160
Cdd:PRK09640 109 -DPLEEASEEKAP----KPEERGGLDRWLVHVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYKRALDKLREK 181
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
6-71 |
6.47e-15 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 68.00 E-value: 6.47e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446369300 6 LYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQSIENMK--AYLCKMATNRSIDKLRSAA 71
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLwRAIERFDPERGVSfsTWLYTIIRNAIIDYLRKQR 69
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
6-137 |
1.19e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 59.69 E-value: 1.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 6 LYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIENIQSIE-NMKAYLCKMATNRSIDKLRSAAhKRNVYVGMWLPE 84
Cdd:PRK12519 34 LYDRHAGLVYGLALKILGNSQEAEDLTQEIFLSLWRKSSYDPKRgSLSSYLLTLTRSRAIDRLRSRR-SRQRLLERWQQE 112
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 446369300 85 PLVEES-DEPSESFVMKEsLSTAYLLLLQQLSEVERIVFilrEVFSYE---YEEIAS 137
Cdd:PRK12519 113 LLGEASeDTPLEQASLAE-RSQRVQTALAQLPESQRQVL---ELAYYEglsQSEIAK 165
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
5-140 |
2.50e-10 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 58.55 E-value: 2.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 5 QLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFI-SLNNIENIQSIENMKAYLCKMATNRSIDKLRSaaHKRNVYV----- 78
Cdd:PRK09641 22 ELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIrAYVNIDSYDINRKFSTWLYRIATNLTIDRLRK--RKPDYYLdaeva 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446369300 79 ---GMWLPEPLVEESDEPSESFVMKESLSTAYLLLLqQLSEVERIVFILREVFSYEYEEIASIVD 140
Cdd:PRK09641 100 gteGLTMYSQLAADDALPEEQVVSLELQETIQEAIL-QLPEKYRTVIVLKYIEDLSLKEISEILD 163
|
|
| PRK09651 |
PRK09651 |
RNA polymerase sigma factor FecI; Provisional |
4-153 |
7.68e-10 |
|
RNA polymerase sigma factor FecI; Provisional
Pssm-ID: 182018 [Multi-domain] Cd Length: 172 Bit Score: 56.74 E-value: 7.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRnVYVGMW-- 81
Cdd:PRK09651 13 ESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEK-AYLEMLal 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446369300 82 LPEPLVeESDEPSESfvmkeSLSTAYLL--LLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRA 153
Cdd:PRK09651 92 MPEGGA-PSPEERES-----QLETLQLLdsMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVKKYVAKA 159
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
6-140 |
3.31e-09 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 55.03 E-value: 3.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 6 LYEAYQPLLFSLAYRILGSVMDAEDIVQDVFisLNNIENIQSIEN---MKAYLCKMATNRSIDKLRSaaHKRNVYvgmWL 82
Cdd:PRK09638 23 LFQQHYSFLYKYLLKLTLDPDLAEDLVQETM--LKAIENLSSFQGrskFSTWLISIASRLYKDHLRK--QKREKL---RL 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 446369300 83 PEPLVEESDEPSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVD 140
Cdd:PRK09638 96 QRAKEETLRKEKWEAAIKGAEWSEMLDALSKLDPEFRAPVILKHYYGYTYEEIAKMLN 153
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
1-170 |
3.32e-09 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 54.88 E-value: 3.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 1 METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIENIQSIENMKAYLCKMATNRSIDKLRSaaHKRNVYVGM 80
Cdd:PRK09644 1 MEIEEIYKMYINDVYRYLFSLTKSHHAAEDLLQETFYRAYIYLEDYDNQKVKPWLFKVAYHTFIDFVRK--EKKVSFVGT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 81 WLPEPLVEESdepSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILEK 160
Cdd:PRK09644 79 DEIEAIQAES---TEEYVVAKNSYEKLIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLKAL 155
|
170
....*....|
gi 446369300 161 PKQSKLSTEK 170
Cdd:PRK09644 156 LKEEKSQNDK 165
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
7-155 |
6.61e-09 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 53.61 E-value: 6.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 7 YEAYQPLLFSLAYRILGSVMDAEDIVQDVFI-SLNNIENIQSiENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMwLPEP 85
Cdd:TIGR02950 1 YREYMHDVFRYLYRLTKDKHLAEDLLQETFLkAYIHLHSFKD-SSIKPWLFRIARNAFIDWYRKDKKIQTIDDDA-IGDL 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 86 LVEESDEPSESFVMKESLSTAYLLLlQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARK 155
Cdd:TIGR02950 79 EQHPVESPEHHLLIKIEQEEITHHL-SRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARK 147
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
106-157 |
2.99e-08 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 49.38 E-value: 2.99e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 446369300 106 AYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSI 157
Cdd:pfam08281 3 ALLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
4-157 |
7.59e-08 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 51.48 E-value: 7.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDI---VQDVFISL-NNIENIQS-IENMKAYLCKMATNRSIDKLRSAAHKRNVYv 78
Cdd:PRK06811 21 EFIVDTYGNLVKKIVHKVLGTVNYSQLIeecVNDIFLSIwNNIDKFDEeKGSFKKWIAAISKYKAIDYKRKLTKNNEID- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 79 gmwLPEPLVEESDEPSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASI--VDKSSVNCRkiFQRARKS 156
Cdd:PRK06811 100 ---SIDEFILISEESIENEIILKENKEEILKLINDLEKLDREIFIRRYLLGEKIEEIAKKlgLTRSAIDNR--LSRGRKK 174
|
.
gi 446369300 157 I 157
Cdd:PRK06811 175 L 175
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
28-159 |
1.98e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 50.31 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 28 AEDIVQDVFIS-LNNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYV------------------GMWLPEPLVE 88
Cdd:PRK12532 33 AEDLVQETLLSaYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTllddelldeafeshfsqnGHWTPEGQPQ 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446369300 89 ESDEPSESFVMKEsLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILE 159
Cdd:PRK12532 113 HWNTPEKSLNNNE-FQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQ 182
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
5-71 |
3.18e-07 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 49.30 E-value: 3.18e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446369300 5 QLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIENIQSIENMKAYLCKMATNRSIDKLRSAA 71
Cdd:PRK07037 2 DVFVDNRSMLVKIAARIVGCRSRAEDVVQDAFVKLVEAPNQDAVKQPVAYLFRIVRNLAIDHYRRQA 68
|
|
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
15-159 |
6.47e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 49.47 E-value: 6.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 15 FSLAYRILGSVMDAEDIVQDVFISL--NNIENIQSIENMKAYLCKMATNRSIDkLRSAAHKRNVYVgmwLPEPlveESDE 92
Cdd:PRK12538 77 YAIALRIVGNRADAEDVVQDTMLKVwtHRGRWQHGRAKFSTWLYRVVSNRCID-LRRKPRTENVDA---VPEV---ADGK 149
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446369300 93 PSESFVMKESLSTAYL-LLLQQLSEVERIVFILrevfSYEYE----EIASIVDKSSVNCRKIFQRARKSILE 159
Cdd:PRK12538 150 PDAVSVIERNELSDLLeAAMQRLPEQQRIAVIL----SYHENmsngEIAEVMDTTVAAVESLLKRGRQQLRD 217
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
4-155 |
6.59e-07 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 48.59 E-value: 6.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFI-SLNNIENIQSIENMKAYLCKMATNRSIDKLRSaAHKRNVYVGMWL 82
Cdd:PRK09415 19 DEIMNEYGQEVLQLVYSYVKNKEVAEDLTQEIFVkCYKSLHTYKGKSSLKTWLYRIAINHCKDYLKS-WHNKKVIVTEDI 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446369300 83 PEPLVEESDEPSESFVMK---ESLSTAYLLLLQQLSEVerivfilreVFSYEYEE--IASIVDKSSVNCRKIFQRARK 155
Cdd:PRK09415 98 FTYMESQKESVEEEVIQNaedERLASAVMSLPIKYREV---------IYLFYYEElsIKEIAEVTGVNENTVKTRLKK 166
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
1-136 |
8.41e-07 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 48.06 E-value: 8.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 1 METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQSIENMKAYLCKMATNRSIDKLRSaaHKRNVYvg 79
Cdd:PRK09637 1 MKLESIWSEYKAQLKAFLHSRVSNEADVDDLLQEVLIKThSNLHSLKDGSSIKSWLYQIANNTIIDFYRK--KNRSEE-- 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 446369300 80 mwLPEPLVEESDEPSESFvmKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIA 136
Cdd:PRK09637 77 --LPDDLLFEDEEREENA--KKELAPCLRPFIDALPEKYAEALRLTELEGLSQKEIA 129
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
4-139 |
1.23e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 48.15 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLnnienIQSIENMK------AYLCKMATNRSIDKLRSAAHKRnvy 77
Cdd:PRK12513 29 EALYARHRTGLYRFLLRLARDRALAEDIFQETWLRV-----IRARAQYQprarfrTWLYQIARNLLIDHWRRHGARQ--- 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446369300 78 vgmwLPEPLVEES------DEPS-----ESFVMKESLSTAylllLQQLSEVERIVFILREVFSYEYEEIASIV 139
Cdd:PRK12513 101 ----APSLDADEQlhaladDGAApeqqlSLFRDRRRLQAA----LETLPDEQREVFLLREHGDLELEEIAELT 165
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
10-147 |
2.12e-06 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 46.69 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 10 YQPLLFSLAYRiLGSVMDAEDIVQDVFISLNNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRnvyvgmwlPEPL-VE 88
Cdd:PRK12527 5 YRELVRFLSAR-LGNRQAAEDVAHDAYLRVLERSSSAQIEHPRAFLYRTALNLVVDRHRRHRVRQ--------AEPLeVL 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446369300 89 ESDE----PSESFVMKESLSTAYL-LLLQQLSEVERIVFILREVFSYEYEEIA-------SIVDKSSVN----CR 147
Cdd:PRK12527 76 DEEErlhsPSPQTRLDLGQRLALLqRALAELPPACRDSFLLRKLEGLSHQQIAehlgisrSLVEKHIVNamkhCR 150
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
6-69 |
1.41e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 44.81 E-value: 1.41e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446369300 6 LYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIENIQSIENMK--AYLCKMATNRSIDKLRS 69
Cdd:PRK12514 24 LYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFAVSGLSpmTWLITIARNHAIDRLRA 89
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
1-160 |
1.81e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 44.09 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 1 METEQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVyVG 79
Cdd:PRK12522 3 EKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVfSSRHQLSYVENYKKWITTICVRTFYDFYRKKKRWKDR-IL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 80 MWLPEPLVEESDEPSESFVMKESLSTAYLLLLQQ----LSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARK 155
Cdd:PRK12522 82 DLFHKEDGGEIEFADDVNISEEFIQKVEAEMIREviqlLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKK 161
|
....*
gi 446369300 156 SILEK 160
Cdd:PRK12522 162 QMREH 166
|
|
| PRK12523 |
PRK12523 |
RNA polymerase sigma factor; Reviewed |
6-136 |
2.88e-05 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 183572 [Multi-domain] Cd Length: 172 Bit Score: 43.69 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 6 LYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRnVYVG--MWLP 83
Cdd:PRK12523 15 LYRDHRGWLLAWLRRNVACRQRAEDLSQDTFVRLLGRPELPTPREPRAFLAAVAKGLMFDHFRRAALEQ-AYLAelALVP 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 446369300 84 EplvEESDEPSESFVMKESLStAYLLLLQQLSEVERIVFILREVFSYEYEEIA 136
Cdd:PRK12523 94 E---AEQPSPEEQHLILEDLK-AIDRLLGKLSSKARAAFLYNRLDGMGHAEIA 142
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
5-128 |
3.10e-05 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 43.53 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 5 QLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFI-SLNNIENI-QSIENMKAYLCKMATNRSIDKLRSaAHKRNVYVGmwl 82
Cdd:PRK09645 13 ALYDEHAAPLWRYALRLTGDRARAEDVVQETLLrAWQHPEVLaDTGRSARAWLFTVARNLVIDERRS-ARARPVEGG--- 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 446369300 83 PEPL-VEESDEPSESFVMKESL--STAylllLQQLSEVERIVfiLREVF 128
Cdd:PRK09645 89 DDVLgVPEQSAPDEVDRALDRLlvADA----LAQLSPEHRAV--LVRSY 131
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
6-140 |
3.61e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 43.73 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 6 LYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNI--ENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMwlP 83
Cdd:PRK12524 31 LTLRLAPRALAVATRVLGDRAEAEDVTQEAMLRLWRIapDWRQGEARVSTWLYRVVCNLCTDRLRRRRRASVDLDDA--P 108
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 446369300 84 EPlveESDEPSESFVMKESLSTAYL-LLLQQLSEVERIVFILREVFSYEYEEIASIVD 140
Cdd:PRK12524 109 EP---ADAAPGAEEALIEGDRMRALdAALAALPERQRQAVVLRHIEGLSNPEIAEVME 163
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
4-155 |
4.38e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 43.00 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFI-SLNNIENIQSiENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMW- 81
Cdd:PRK12541 8 EEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYrMLVHIDYYKG-EEIRPWLFTIAYNAFIDWYRKEKKYKTTTIEEFh 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446369300 82 -LPEPLVEEsdepsESFVMKESLStaYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARK 155
Cdd:PRK12541 87 lPNVPSTEH-----EYFIKHEIAS--WLDSLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRK 154
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
28-154 |
8.56e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 42.45 E-value: 8.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 28 AEDIVQDVFIS-LNNIENIQSIENMKAYLCKMATNRSIDKLRSaaHKRNVYV----------------GMWLPEPLVEES 90
Cdd:PRK12530 34 AEDVVQEALVSaYKNADSFKGQSALKTWIFAILKNKIIDLIRY--RKRFVNEselieedspnsffdekGHWKPEYYEPSE 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446369300 91 DEPSESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRAR 154
Cdd:PRK12530 112 WQEVENTVYKEEFWLIFEACLNHLPAQQARVFMMREYLELSSEQICQECDISTSNLHVLLYRAR 175
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
5-138 |
1.03e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 42.01 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 5 QLYEAYQPLLFSLAYRILGSVMdAEDIVQDVFISL-NNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMWLP 83
Cdd:PRK12518 15 QLYRRYQQKVRSTLYQLCGREL-LDDLVQEVFLRVwKGLPKLRNPAYFSTWLYRITWNVATDARRQFAQRPSRIQDDSLN 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 446369300 84 EPLVEESDEPSESFVMKESLSTAYLlllQQLSEVERIVFILREVFSYEYEEIASI 138
Cdd:PRK12518 94 DQPSRPSDTPDLMQLHYQDLVQQGL---QTLSLEHRAVLVLHDLEDLPQKEIAEI 145
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
4-76 |
1.34e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 41.96 E-value: 1.34e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLnnIENIQSIENMKA----YLCKMATNRSIDKLRS-AAHKRNV 76
Cdd:PRK12534 28 EALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLI--WHKAGQFDPSRArgltWLAMIARNKAIDHLRAnAPQRRNV 103
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
4-138 |
2.38e-04 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 41.31 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 4 EQLYEAYQPLLFSLAYRILGSVMDAEDIVQDVFISLnnienIQSIEN-----MKAYLCKMATNRSIDKLRSAAHKRnvyv 78
Cdd:PRK09647 31 EELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRV-----FRSLQNyqpgtFEGWLHRITTNLFLDMVRRRARIR---- 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446369300 79 gMwlpEPLVEE-----SDEPSESFVMKES-LSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASI 138
Cdd:PRK09647 102 -M---EALPEDydrvpGDEPNPEQIYHDArLDPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIAAT 163
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
23-142 |
5.75e-04 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 39.95 E-value: 5.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 23 GSVMDAEDIVQDVFISLnnienIQSIENMK-------AYLCKMATNRSIDKLRSAAhkRNVYVGMW-LPEplvEESDEPS 94
Cdd:PRK09648 50 RPGLSADDVAQEVCLAV-----ITALPRYRdqgrpflAFVYGIAAHKVADAHRAAG--RDKAVPTEeVPE---RPSDDAG 119
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 446369300 95 -ESFVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKS 142
Cdd:PRK09648 120 pEERALRSESSNRMRELLDTLPEKQREILILRVVVGLSAEETAEAVGST 168
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
12-138 |
1.75e-03 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 38.48 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 12 PLLFSLAYRILGSVMDAEDIVQDVFISL-NNIENIQS-IENMKAYLCKMATNRSIDKLRsaahKRNVYVGMWLPEPlVEE 89
Cdd:PRK05602 31 PRLLALATRMLGDPAEAEDVAQETFLRIwKQAPSWRPgEARFDTWLHRVVLNLCYDRLR----RRREVPVEDAPDV-PDP 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 446369300 90 SDEPSESFVMKES---LSTAylllLQQLSEVERIVFILrevfsYEYEEIASI 138
Cdd:PRK05602 106 APGPDAGLEARQRarrVEQA----LAALPERQREAIVL-----QYYQGLSNI 148
|
|
| PRK06930 |
PRK06930 |
positive control sigma-like factor; Validated |
62-164 |
2.10e-03 |
|
positive control sigma-like factor; Validated
Pssm-ID: 180757 [Multi-domain] Cd Length: 170 Bit Score: 38.17 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 62 RSIDklRSAAHKRNVYVGMWLPEPLVEESD------EPSESFV-------MKESLSTayllllqqLSEVERIVFILREVF 128
Cdd:PRK06930 60 RGID--RRAAYQREVICDPLLIQRYFRSMEdlewdiEEPESVIsewdkirIEDALSV--------LTEREKEVYLMHRGY 129
|
90 100 110
....*....|....*....|....*....|....*.
gi 446369300 129 SYEYEEIASIVDKSSVNCRKIFQRARKSILEKPKQS 164
Cdd:PRK06930 130 GLSYSEIADYLNIKKSTVQSMIERAEKKIARQINES 165
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
22-154 |
4.01e-03 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 37.86 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 22 LGSVMDAEDIVQDVFIS-LNNIENIQSIENMKAYLCKMATNRSIDKLRSaaHKRNVYVGMWLPEPLVEES---------- 90
Cdd:PRK12544 39 LSDLHLAEDAVQEALIGaLKNADSFAGRAAFKTWVFAILKNKIIDLLRQ--KKRHVSASSLLRDEEEEEDfeelfdesgh 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446369300 91 ----------DEPSESfVMKESLSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRAR 154
Cdd:PRK12544 117 wqkderpqawGNPEES-LEQEQFWRIFEACLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYRAR 189
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
8-166 |
4.65e-03 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 37.00 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 8 EAYQPLLFSLAYRILGSVMDAEDIVQDVFISLNNIENIQSIENMKAYLCKMATNRSIDKLRSAAHKRNVYVGMWLPEPLV 87
Cdd:PRK09642 2 QTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGLKTWMARIATNHAIDYKRKKARENEELSLCKETEENI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446369300 88 EESDEPSESFVMKESlstaYLLLLQQLSEVE---RIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSILEKPKQS 164
Cdd:PRK09642 82 KSSHNIEDLLLTKEQ----KLLIAQKLRELPenyRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKEE 157
|
..
gi 446369300 165 KL 166
Cdd:PRK09642 158 EF 159
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
88-140 |
6.85e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 36.64 E-value: 6.85e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 446369300 88 EESDEPSESFVMKESlSTAYLLLLQQLSEVERIVFILREVFSYEYEEIASIVD 140
Cdd:PRK12543 93 PVSIDFSEDVLSKES-NQELIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQ 144
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
111-157 |
9.44e-03 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 33.62 E-value: 9.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 446369300 111 LQQLSEVERIVFILREVFSYEYEEIASIVDKSSVNCRKIFQRARKSI 157
Cdd:cd06171 8 LDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKL 54
|
|
| |
