Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); This entry describes a protein found ...
1-164
6.96e-60
Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage.
The actual alignment was detected with superfamily member TIGR02131:
Pssm-ID: 385588 [Multi-domain] Cd Length: 165 Bit Score: 183.79 E-value: 6.96e-60
polyhydroxyalkanoic acid inclusion protein PhaP; This model describes a protein found in ...
1-164
6.96e-60
polyhydroxyalkanoic acid inclusion protein PhaP; This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Pssm-ID: 131186 [Multi-domain] Cd Length: 165 Bit Score: 183.79 E-value: 6.96e-60
Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); This entry describes a protein found ...
1-164
5.47e-49
Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage.
Pssm-ID: 370578 [Multi-domain] Cd Length: 168 Bit Score: 155.87 E-value: 5.47e-49
polyhydroxyalkanoic acid inclusion protein PhaP; This model describes a protein found in ...
1-164
6.96e-60
polyhydroxyalkanoic acid inclusion protein PhaP; This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Pssm-ID: 131186 [Multi-domain] Cd Length: 165 Bit Score: 183.79 E-value: 6.96e-60
Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); This entry describes a protein found ...
1-164
5.47e-49
Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage.
Pssm-ID: 370578 [Multi-domain] Cd Length: 168 Bit Score: 155.87 E-value: 5.47e-49
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
23-169
1.89e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 38.11 E-value: 1.89e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
36-160
4.24e-03
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 36.96 E-value: 4.24e-03
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
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specific hits meet or exceed a domain-specific e-value threshold
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and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
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the domain superfamily to which the specific and non-specific hits belong
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