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Conserved domains on  [gi|446371641|ref|WP_000449496|]
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MULTISPECIES: hypothetical protein [Bacillus]

Protein Classification

WD40/YVTN/BNR-like repeat-containing protein( domain architecture ID 11468233)

WD40/YVTN/BNR-like repeat-containing protein similar to plant photosynthesis system II assembly factor Ycf48, and some glycosylhydrolases

PubMed:  18550538|21531723

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4447 COG4447
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor ...
 51-134 8.34e-09

Uncharacterized conserved protein related to plant photosystem II stability/assembly factor [General function prediction only];


:

Pssm-ID: 443546 [Multi-domain]  Cd Length: 156  Bit Score: 53.47  E-value: 8.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446371641  51 SEDNVVYGVGDEGIFIRSMNGGENWTIQRFPTKATSWN--VCSNVQGTVVAHGEKTLYLSNNFGLTWETIHPfleyGSAA 128
Cdd:COG4447    1 ADGNRLWAVGASGGILRSTDGGKTWTPLSDGLPGLSLRavAFSDPNTVWVGTGPGGIYRSTDGGKTWTEVNS----GPDN 76


                 ....*.
gi 446371641 129 PSIRSL 134
Cdd:COG4447   77 PRLFAI 82
 
Name Accession Description Interval E-value
COG4447 COG4447
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor ...
 51-134 8.34e-09

Uncharacterized conserved protein related to plant photosystem II stability/assembly factor [General function prediction only];


Pssm-ID: 443546 [Multi-domain]  Cd Length: 156  Bit Score: 53.47  E-value: 8.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446371641  51 SEDNVVYGVGDEGIFIRSMNGGENWTIQRFPTKATSWN--VCSNVQGTVVAHGEKTLYLSNNFGLTWETIHPfleyGSAA 128
Cdd:COG4447    1 ADGNRLWAVGASGGILRSTDGGKTWTPLSDGLPGLSLRavAFSDPNTVWVGTGPGGIYRSTDGGKTWTEVNS----GPDN 76


                 ....*.
gi 446371641 129 PSIRSL 134
Cdd:COG4447   77 PRLFAI 82
 
Name Accession Description Interval E-value
COG4447 COG4447
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor ...
 51-134 8.34e-09

Uncharacterized conserved protein related to plant photosystem II stability/assembly factor [General function prediction only];


Pssm-ID: 443546 [Multi-domain]  Cd Length: 156  Bit Score: 53.47  E-value: 8.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446371641  51 SEDNVVYGVGDEGIFIRSMNGGENWTIQRFPTKATSWN--VCSNVQGTVVAHGEKTLYLSNNFGLTWETIHPfleyGSAA 128
Cdd:COG4447    1 ADGNRLWAVGASGGILRSTDGGKTWTPLSDGLPGLSLRavAFSDPNTVWVGTGPGGIYRSTDGGKTWTEVNS----GPDN 76


                 ....*.
gi 446371641 129 PSIRSL 134
Cdd:COG4447   77 PRLFAI 82
COG4447 COG4447
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor ...
 15-124 3.85e-06

Uncharacterized conserved protein related to plant photosystem II stability/assembly factor [General function prediction only];


Pssm-ID: 443546 [Multi-domain]  Cd Length: 156  Bit Score: 46.15  E-value: 3.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446371641  15 DGKLLLATTYNGLFVEQDG--EWKRILNGFQK-RIRDLH-SEDNVVYGVGDEGIFIRSMNGGENWTIQRFPTKATSWN-- 88
Cdd:COG4447    3 GNRLWAVGASGGILRSTDGgkTWTPLSDGLPGlSLRAVAfSDPNTVWVGTGPGGIYRSTDGGKTWTEVNSGPDNPRLFai 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 446371641  89 VCSNvQGTVVAhGEKTLYLSNNFGLTWETIHPFLEY 124
Cdd:COG4447   83 AFSD-PNTGYA-AVGGIYRTTDGGKTWTKVSSGLPV 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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