|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
20-301 |
2.43e-118 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 341.32 E-value: 2.43e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 20 SPWRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPPSFSHWLGTDQLGRDILTRLMQAGRISL 99
Cdd:COG1173 3 SRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 100 TIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSewkvPSdyrLYVIMIILSLVGWPG 179
Cdd:COG1173 83 LVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLG----PG---LLNVILALGLTGWPG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 180 LARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNMI 259
Cdd:COG1173 156 YARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTML 235
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 446373208 260 SAANSLIdfQKRPWLWIPPGFAIFITVVSINLLGDALRDALD 301
Cdd:COG1173 236 SEGRNYL--LTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
33-301 |
4.38e-68 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 212.63 E-value: 4.38e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 33 KMALVGFYALMFMFLFcfvGPLFSPYASGKIQVALINKPPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLSVIL 112
Cdd:TIGR02790 2 VSALLIIAVLFLLAIF---APWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 113 GALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSewkvPSdyrLYVIMIILSLVGWPGLARLVRGQILSLR 192
Cdd:TIGR02790 79 GLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILG----PG---LENVIIAIVLVHWAWYARMVRGMVVSLK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 193 EQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNMISAANSLIdfQKRP 272
Cdd:TIGR02790 152 QREFVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYI--WTQP 229
|
250 260
....*....|....*....|....*....
gi 446373208 273 WLWIPPGFAIFITVVSINLLGDALRDALD 301
Cdd:TIGR02790 230 LLMIYPGLAILISVMAFNLLGDALRDHLG 258
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
20-306 |
1.10e-63 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 203.04 E-value: 1.10e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 20 SPWRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPY-ASGKIQVALINKPPSFSHWLGTDQLGRDILTRLMQAGRIS 98
Cdd:PRK15082 23 TPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYdAENYFDYDALNAGPSLQHWFGVDSLGRDIFSRILVGARIS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 99 LTIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKVPsdyrlyvIMIILSLVGWP 178
Cdd:PRK15082 103 LAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMAN-------VIIAVAIFSIP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 179 GLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNM 258
Cdd:PRK15082 176 AFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAM 255
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 446373208 259 ISAANSliDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 306
Cdd:PRK15082 256 LNEARA--DMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIKG 301
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
96-296 |
3.93e-21 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 88.49 E-value: 3.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 96 RISLTIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKVPSDYRLYV-IMIILSL 174
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGlPALILAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 175 VGWPGLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGvVPPTPS 254
Cdd:cd06261 82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG-EAPGPG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446373208 255 WGNMISAANSLidfqkrpwlwipPGFAIFITVVSINLLGDAL 296
Cdd:cd06261 161 TGLLLIFAILF------------PGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
113-306 |
9.85e-19 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 81.96 E-value: 9.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 113 GALLGAIAGFYRG-IVDNIIMRLADILMSMPGLPLLIImgaiLSEWKVPSDYRLYVIM-IILSLVGWPGLARLVRGQILS 190
Cdd:pfam00528 1 GIPLGIIAALRRGrRLDRLLRPLIDLLQALPSFVLAIL----LVVIAILSILGHGILPaIILALLGWAGYARLIRRAALR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 191 LREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYL----GLGVVPPTPSWGNMISaansli 266
Cdd:pfam00528 77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP------ 150
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 446373208 267 dfqkrpwLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 306
Cdd:pfam00528 151 -------EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
20-301 |
2.43e-118 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 341.32 E-value: 2.43e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 20 SPWRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPPSFSHWLGTDQLGRDILTRLMQAGRISL 99
Cdd:COG1173 3 SRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 100 TIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSewkvPSdyrLYVIMIILSLVGWPG 179
Cdd:COG1173 83 LVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLG----PG---LLNVILALGLTGWPG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 180 LARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNMI 259
Cdd:COG1173 156 YARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTML 235
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 446373208 260 SAANSLIdfQKRPWLWIPPGFAIFITVVSINLLGDALRDALD 301
Cdd:COG1173 236 SEGRNYL--LTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
33-301 |
4.38e-68 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 212.63 E-value: 4.38e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 33 KMALVGFYALMFMFLFcfvGPLFSPYASGKIQVALINKPPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLSVIL 112
Cdd:TIGR02790 2 VSALLIIAVLFLLAIF---APWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 113 GALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSewkvPSdyrLYVIMIILSLVGWPGLARLVRGQILSLR 192
Cdd:TIGR02790 79 GLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILG----PG---LENVIIAIVLVHWAWYARMVRGMVVSLK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 193 EQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNMISAANSLIdfQKRP 272
Cdd:TIGR02790 152 QREFVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYI--WTQP 229
|
250 260
....*....|....*....|....*....
gi 446373208 273 WLWIPPGFAIFITVVSINLLGDALRDALD 301
Cdd:TIGR02790 230 LLMIYPGLAILISVMAFNLLGDALRDHLG 258
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
20-306 |
1.10e-63 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 203.04 E-value: 1.10e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 20 SPWRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPY-ASGKIQVALINKPPSFSHWLGTDQLGRDILTRLMQAGRIS 98
Cdd:PRK15082 23 TPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYdAENYFDYDALNAGPSLQHWFGVDSLGRDIFSRILVGARIS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 99 LTIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKVPsdyrlyvIMIILSLVGWP 178
Cdd:PRK15082 103 LAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMAN-------VIIAVAIFSIP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 179 GLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNM 258
Cdd:PRK15082 176 AFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAM 255
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 446373208 259 ISAANSliDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 306
Cdd:PRK15082 256 LNEARA--DMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIKG 301
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
22-305 |
4.93e-62 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 198.50 E-value: 4.93e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 22 WRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPPSFSHWLGTDQLGRDILTRLMQAGRISLTI 101
Cdd:PRK09881 20 GAKLVWMLKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 102 GLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSewkvPSdyrLYVIMIILSLVGWPGLA 181
Cdd:PRK09881 100 GLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALG----PS---LFNAMLAIAIVRIPFYV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 182 RLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNMISA 261
Cdd:PRK09881 173 RLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVAN 252
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 446373208 262 ANSLIDFQKrpWLWIPPGFAIFITVVSINLLGDALRDALDPKMR 305
Cdd:PRK09881 253 GRNYVLDQW--WYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAG 294
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
30-305 |
9.83e-61 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 194.50 E-value: 9.83e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 30 KRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLS 109
Cdd:PRK10417 1 SSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 110 VILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEwkvpsdyRLYVIMIILSLVGWPGLARLVRGQIL 189
Cdd:PRK10417 81 LALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGT-------GLTNVIIAIALSHWAWYARMVRSLVI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 190 SLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNMISAANSLIdfQ 269
Cdd:PRK10417 154 SLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYI--W 231
|
250 260 270
....*....|....*....|....*....|....*.
gi 446373208 270 KRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMR 305
Cdd:PRK10417 232 TQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHLV 267
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
2-305 |
7.96e-60 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 193.13 E-value: 7.96e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 2 ETVTAITEKKEKKRRnesSPWRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPPSF--SHWLG 79
Cdd:PRK15406 9 EALENFSEKLEVEGR---SLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMesGHYFG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 80 TDQLGRDILTRLMQAGRISLTIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEwkv 159
Cdd:PRK15406 86 TDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQ--- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 160 psdyRLYVIMIILSLVGWPGLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGES 239
Cdd:PRK15406 163 ----NILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFES 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446373208 240 ALSYLGLGVVPPTPSWGNMIS-AANSLidfQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMR 305
Cdd:PRK15406 239 FLSFLGLGTQEPLSSWGALLSdGANSM---EVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
30-306 |
9.39e-58 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 187.68 E-value: 9.39e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 30 KRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPP------SFSHWLGTDQLGRDILTRLMQAGRISLTIGL 103
Cdd:PRK10913 27 KRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPvwqeggSWAHILGTDDVGRDVLSRLMYGARLSLLVGC 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 104 ASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKVPSDyrlyvimIILSLVGWPGLARL 183
Cdd:PRK10913 107 LVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAA-------LALTFVALPHYVRL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 184 VRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPPTPSWGNMISaan 263
Cdd:PRK10913 180 TRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS--- 256
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 446373208 264 SLIDFQKRPWlWIP--PGFAIFITVVSINLLGDALRDALDPKMRR 306
Cdd:PRK10913 257 DVLQFAQSAW-WVVtfPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
18-304 |
4.87e-52 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 172.69 E-value: 4.87e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 18 ESSPWRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPPSF------SHWLGTDQLGRDILTRL 91
Cdd:COG4171 12 IPSPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWddngdvSFFLGTDDLGRDILSRL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 92 MQAGRisLTIGLASMV--LSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILsewkvpsDYRLYVIM 169
Cdd:COG4171 92 LYGAR--YTFGSALLVvlAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALL-------GPGLENAM 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 170 IILSLVGWPGLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVV 249
Cdd:COG4171 163 LAITLALLPQFIHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQ 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 446373208 250 PPTPSWGNMISAANSLIDFQkrPWLWIPPGFAIFITVVSINLLGDALRDALDPKM 304
Cdd:COG4171 243 LPSPEWGAMLGDSLELIYLA--PWTVILPGLAIMFSVLIVNLVGDGLRRALNKGV 295
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
71-304 |
3.75e-51 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 171.87 E-value: 3.75e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 71 PPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIM 150
Cdd:COG4239 116 PPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLLIIL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 151 GAILsewkVPSdyrLYVIMIILSLVGWPGLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLpilivVSTLG 230
Cdd:COG4239 196 SSIF----QPS---FWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAM-----VATLT 263
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446373208 231 -----VAGSILGESALSYLGLGVVPPTPSWGNMISAANSLIDfqkRPWLWIPPGFAIFITVVSINLLGDALRDALDPKM 304
Cdd:COG4239 264 flpfiLSGAITTLTSLDFLGFGLPPGSPSLGELLAQGKNNLQ---APWLGLSAFVVLALMLSLLVFIGEAVRDAFDPRK 339
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
20-301 |
7.49e-37 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 133.29 E-value: 7.49e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 20 SPWRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPPSFSHW------LGTDQLGRDILTRLMQ 93
Cdd:PRK15111 14 GTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYgevsffLGTDDLGRDVLSRLLS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 94 AGriSLTIGLASMV--LSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEwkvpsdyRLYVIMII 171
Cdd:PRK15111 94 GA--APTVGGAFVVtlAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGP-------SLSHAMFA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 172 LSLVGWPGLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGVVPP 251
Cdd:PRK15111 165 VWLALLPRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLP 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 446373208 252 TPSWGNMISAANSLIdfQKRPWLWIPPGFAIFITVVSINLLGDALRDALD 301
Cdd:PRK15111 245 SPEWGAMLGDSLELI--YVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
71-302 |
1.22e-33 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 125.87 E-value: 1.22e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 71 PPSFSHWLGTDQLGRDILTRLMQAGRISLTIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIM 150
Cdd:PRK15021 116 PPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 151 GAILSewkvPSDYRLYVIMIILslvGWPGLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLG 230
Cdd:PRK15021 196 SSVVQ----PNFWWLLAITVLF---GWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFI 268
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446373208 231 VAGSILGESALSYLGLGVVPPTPSWGN-MISAANSLidfqKRPWLWIPPGFAIFITVVSINLLGDALRDALDP 302
Cdd:PRK15021 269 LCSSITTLTSLDFLGFGLPLGSPSLGElLLQGKNNL----QAPWLGITAFLSVAILLSLLIFIGEAVRDAFDP 337
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
96-296 |
3.93e-21 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 88.49 E-value: 3.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 96 RISLTIGLASMVLSVILGALLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKVPSDYRLYV-IMIILSL 174
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGlPALILAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 175 VGWPGLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYLGLGvVPPTPS 254
Cdd:cd06261 82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG-EAPGPG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446373208 255 WGNMISAANSLidfqkrpwlwipPGFAIFITVVSINLLGDAL 296
Cdd:cd06261 161 TGLLLIFAILF------------PGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
113-306 |
9.85e-19 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 81.96 E-value: 9.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 113 GALLGAIAGFYRG-IVDNIIMRLADILMSMPGLPLLIImgaiLSEWKVPSDYRLYVIM-IILSLVGWPGLARLVRGQILS 190
Cdd:pfam00528 1 GIPLGIIAALRRGrRLDRLLRPLIDLLQALPSFVLAIL----LVVIAILSILGHGILPaIILALLGWAGYARLIRRAALR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 191 LREQAFMQAADVLGMKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGESALSYL----GLGVVPPTPSWGNMISaansli 266
Cdd:pfam00528 77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP------ 150
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 446373208 267 dfqkrpwLWIPPGFAIFITVVSINLLGDALRDALDPKMRR 306
Cdd:pfam00528 151 -------EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
82-306 |
9.66e-16 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 76.26 E-value: 9.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 82 QLGRDILTRLMQAGRISLTIGLASMVLSVILGALLGAIAGFYRG-IVDNIIMRLADILMSMP----GLPLLIIMGAIL-- 154
Cdd:COG0601 82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGsWLDRLITVLALLGISIPsfwlGLLLILLFAVKLgw 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 155 -------SEWKVPSDYRLYVIM--IILSLVGWPGLARLVRGQILSLREQAFMQAADVLGMKDYRKIIYHLIPN-VLPILI 224
Cdd:COG0601 162 lpvsgrvSPWEDFLDALRHLILpaLTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNaLIPVVT 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446373208 225 VVS-TLG--VAGSILGESALSYLGLGVVpptpswgnMISAANSLiDFqkrpwlwipP---GFAIFIT--VVSINLLGDAL 296
Cdd:COG0601 242 VLGlQLGglLGGAVVVETVFSWPGLGRL--------LVDAILNR-DY---------PvvqGIVLLIAvlVVLVNLLVDLL 303
|
250
....*....|
gi 446373208 297 RDALDPKMRR 306
Cdd:COG0601 304 YALLDPRIRL 313
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
20-72 |
3.27e-11 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 57.42 E-value: 3.27e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 446373208 20 SPWRQALKKIKRNKMALVGFYALMFMFLFCFVGPLFSPYASGKIQVALINKPP 72
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| |
