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Conserved domains on  [gi|446383428|ref|WP_000461283|]
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MULTISPECIES: hypothetical protein [Streptococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1441 super family cl46780
Protein of unknown function (DUF1441); This family consists of several hypothetical ...
 46-99 8.52e-03

Protein of unknown function (DUF1441); This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown. However, it appears to be distantly related to other HTH families so may act as a transcriptional regulator.


The actual alignment was detected with superfamily member COG4220:

Pssm-ID: 481120  Cd Length: 170  Bit Score: 35.42  E-value: 8.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446383428  46 SGLSQWLDVSTTTIVKWQREGMPhiVIDGVTLYDKRKIATWLNHFERNKIISQE 99
Cdd:COG4220   12 AELAELFGVSDRTIDQWARRGIP--VVSRRGRYDLAAVVRWYIERLREKAAGRG 63
 
Name Accession Description Interval E-value
Nu1 COG4220
Phage DNA packaging protein, Nu1 subunit of terminase [Mobilome: prophages, transposons];
46-99 8.52e-03

Phage DNA packaging protein, Nu1 subunit of terminase [Mobilome: prophages, transposons];


Pssm-ID: 443364  Cd Length: 170  Bit Score: 35.42  E-value: 8.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446383428  46 SGLSQWLDVSTTTIVKWQREGMPhiVIDGVTLYDKRKIATWLNHFERNKIISQE 99
Cdd:COG4220   12 AELAELFGVSDRTIDQWARRGIP--VVSRRGRYDLAAVVRWYIERLREKAAGRG 63
 
Name Accession Description Interval E-value
Nu1 COG4220
Phage DNA packaging protein, Nu1 subunit of terminase [Mobilome: prophages, transposons];
46-99 8.52e-03

Phage DNA packaging protein, Nu1 subunit of terminase [Mobilome: prophages, transposons];


Pssm-ID: 443364  Cd Length: 170  Bit Score: 35.42  E-value: 8.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446383428  46 SGLSQWLDVSTTTIVKWQREGMPhiVIDGVTLYDKRKIATWLNHFERNKIISQE 99
Cdd:COG4220   12 AELAELFGVSDRTIDQWARRGIP--VVSRRGRYDLAAVVRWYIERLREKAAGRG 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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