NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446387271|ref|WP_000465126|]
View 

SEL1-like repeat protein [Acinetobacter baumannii]

Protein Classification

SEL1-like repeat protein( domain architecture ID 11434924)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16870393
SCOP:  3001345

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
36-255 1.39e-62

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 198.23  E-value: 1.39e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  36 LAESGDAGAQAKLGELYVEGQVVPQDYKKAFKWYSKAANQGNAEAQNNLGAMYALGQGVEQNYKKAFEWYSKAAEQGEVK 115
Cdd:COG0790   21 AAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQGDAE 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 116 AQNNLGAYYANGDGGVKNYQKAFEWYSKAATQDNAEAKYYLGILYEEGYGVTQDYKKAFEWYSKAAAQNYADAQNNLAAL 195
Cdd:COG0790  101 AQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVL 180
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 196 YAQGKGVELNNKKAFELYSKAAEQGNEKAQNNLGAIYALGIGVNQDYKKAFEWYSKAAQQ 255
Cdd:COG0790  181 YENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
259-293 3.25e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.93  E-value: 3.25e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 446387271   259 EAQFTVGMMYYKGEGVQQNNELAEKWLRKAAENGN 293
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
36-255 1.39e-62

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 198.23  E-value: 1.39e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  36 LAESGDAGAQAKLGELYVEGQVVPQDYKKAFKWYSKAANQGNAEAQNNLGAMYALGQGVEQNYKKAFEWYSKAAEQGEVK 115
Cdd:COG0790   21 AAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQGDAE 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 116 AQNNLGAYYANGDGGVKNYQKAFEWYSKAATQDNAEAKYYLGILYEEGYGVTQDYKKAFEWYSKAAAQNYADAQNNLAAL 195
Cdd:COG0790  101 AQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVL 180
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 196 YAQGKGVELNNKKAFELYSKAAEQGNEKAQNNLGAIYALGIGVNQDYKKAFEWYSKAAQQ 255
Cdd:COG0790  181 YENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
78-112 1.78e-08

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 49.48  E-value: 1.78e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 446387271    78 AEAQNNLGAMYALGQGVEQNYKKAFEWYSKAAEQG 112
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
78-112 5.79e-08

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 47.90  E-value: 5.79e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 446387271   78 AEAQNNLGAMYALGQGVEQNYKKAFEWYSKAAEQG 112
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
259-293 3.25e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.93  E-value: 3.25e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 446387271   259 EAQFTVGMMYYKGEGVQQNNELAEKWLRKAAENGN 293
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
259-292 5.08e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.81  E-value: 5.08e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 446387271  259 EAQFTVGMMYYKGEGVQQNNELAEKWLRKAAENG 292
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
36-255 1.39e-62

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 198.23  E-value: 1.39e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  36 LAESGDAGAQAKLGELYVEGQVVPQDYKKAFKWYSKAANQGNAEAQNNLGAMYALGQGVEQNYKKAFEWYSKAAEQGEVK 115
Cdd:COG0790   21 AAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQGDAE 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 116 AQNNLGAYYANGDGGVKNYQKAFEWYSKAATQDNAEAKYYLGILYEEGYGVTQDYKKAFEWYSKAAAQNYADAQNNLAAL 195
Cdd:COG0790  101 AQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVL 180
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 196 YAQGKGVELNNKKAFELYSKAAEQGNEKAQNNLGAIYALGIGVNQDYKKAFEWYSKAAQQ 255
Cdd:COG0790  181 YENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
55-291 4.83e-61

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 193.99  E-value: 4.83e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  55 GQVVPQDYKKAFKWYSKAANQGNAEAQNNLGAMYALGQGVEQNYKKAFEWYSKAAEQGEVKAQNNLGAYYANGDGGVKNY 134
Cdd:COG0790    4 AAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDY 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 135 QKAFEWYSKAATQDNAEAKYYLGILYEEGYGVTQDYKKAFEWYSKAAAQNYADAQNNLAALYAQGKGVELNNKKAFELYS 214
Cdd:COG0790   84 EKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYR 163
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446387271 215 KAAEQGNEKAQNNLGAIYALGIGVNQDYKKAFEWYSKAAQQENDEAQFTVGMMYYKGEGVQQNNELAEKWLRKAAEN 291
Cdd:COG0790  164 KAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
25-219 1.77e-60

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 192.84  E-value: 1.77e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  25 GHQPDFKDITHLAESGDAGAQAKLGELYVEGQVVPQDYKKAFKWYSKAANQGNAEAQNNLGAMYALGQGVEQNYKKAFEW 104
Cdd:COG0790   46 GAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEW 125
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 105 YSKAAEQGEVKAQNNLGAYYANGDGGVKNYQKAFEWYSKAATQDNAEAKYYLGILYEEGYGVTQDYKKAFEWYSKAAAQN 184
Cdd:COG0790  126 YEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 446387271 185 YADAQNNLAALYAQGKGVELNNKKAFELYSKAAEQ 219
Cdd:COG0790  206 DADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
88-296 3.74e-50

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 166.26  E-value: 3.74e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  88 YALGQGVEQNYKKAFEWYSKAAEQGEVKAQNNLGAYYANGDGGVKNYQKAFEWYSKAATQDNAEAKYYLGILYEEGYGVT 167
Cdd:COG0790    1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 168 QDYKKAFEWYSKAAAQNYADAQNNLAALYAQGKGVELNNKKAFELYSKAAEQGNEKAQNNLGAIYALGIGVNQDYKKAFE 247
Cdd:COG0790   81 KDYEKALEWFEKAAEQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAE 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 446387271 248 WYSKAAQQENDEAQFTVGMMYYKGEGVQQNNELAEKWLRKAAENGNKDA 296
Cdd:COG0790  161 WYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADA 209
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
38-287 3.71e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.36  E-value: 3.71e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  38 ESGDAGAQAKLGELYVEGQvvpqDYKKAFKWYSKA--ANQGNAEAQNNLGAMYALgqgvEQNYKKAFEWYSKAAEQGE-- 113
Cdd:COG2956   38 DPETVEAHLALGNLYRRRG----EYDRAIRIHQKLleRDPDRAEALLELAQDYLK----AGLLDRAEELLEKLLELDPdd 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 114 VKAQNNLGAYYANgdggVKNYQKAFEWYSKAA--TQDNAEAKYYLGILYEEgygvTQDYKKAFEWYSKA--AAQNYADAQ 189
Cdd:COG2956  110 AEALRLLAEIYEQ----EGDWEKAIEVLERLLklGPENAHAYCELAELYLE----QGDYDEAIEALEKAlkLDPDCARAL 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 190 NNLAALYAQGKgvelNNKKAFELYSKAAEQGNEKAQ--NNLGAIYALgigvNQDYKKAFEWYSKA-AQQENDEAQFTVGM 266
Cdd:COG2956  182 LLLAELYLEQG----DYEEAIAALERALEQDPDYLPalPRLAELYEK----LGDPEEALELLRKAlELDPSDDLLLALAD 253
                        250       260
                 ....*....|....*....|.
gi 446387271 267 MYYKGEGVQQNNELAEKWLRK 287
Cdd:COG2956  254 LLERKEGLEAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
38-261 8.87e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.01  E-value: 8.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  38 ESGDAGAQAKLGELYVEGQvvpqDYKKAFKWYSKAA--NQGNAEAQNNLGAMYALgqgvEQNYKKAFEWYSKAAEQ--GE 113
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLG----RYEEAIEDYEKALelDPDDAEALYNLGLAYLR----LGRYEEALADYEQALELdpDD 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 114 VKAQNNLGAYYANgdggVKNYQKAFEWYSKAATQD--NAEAKYYLGILYEEgygvTQDYKKAFEWYSKAAAQN--YADAQ 189
Cdd:COG0457   76 AEALNNLGLALQA----LGRYEEALEDYDKALELDpdDAEALYNLGLALLE----LGRYDEAIEAYERALELDpdDADAL 147
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446387271 190 NNLAALYAQGKgvelNNKKAFELYSKAAEQGNEKAQNNLGAIYALGIGVNQDYKKAFEWYSKAAQQENDEAQ 261
Cdd:COG0457  148 YNLGIALEKLG----RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
78-112 1.78e-08

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 49.48  E-value: 1.78e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 446387271    78 AEAQNNLGAMYALGQGVEQNYKKAFEWYSKAAEQG 112
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
72-290 3.89e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 3.89e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  72 AANQGNAEAQNNLGAMYALgqgvEQNYKKAFEWYSKAAE--QGEVKAQNNLGAYYANgdggVKNYQKAFEWYSKAATQD- 148
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRR----LGRYEEAIEDYEKALEldPDDAEALYNLGLAYLR----LGRYEEALADYEQALELDp 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 149 -NAEAKYYLGILYEEgygvTQDYKKAFEWYSKAAAQN--YADAQNNLAALYAQGKgvelNNKKAFELYSKAAEQ--GNEK 223
Cdd:COG0457   74 dDAEALNNLGLALQA----LGRYEEALEDYDKALELDpdDAEALYNLGLALLELG----RYDEAIEAYERALELdpDDAD 145
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446387271 224 AQNNLGAIYALgigvNQDYKKAFEWYSKAAQQENDEAQFTVGMMYYKGEGVQQNNELAEKWLRKAAE 290
Cdd:COG0457  146 ALYNLGIALEK----LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
78-112 5.79e-08

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 47.90  E-value: 5.79e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 446387271   78 AEAQNNLGAMYALGQGVEQNYKKAFEWYSKAAEQG 112
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
150-185 7.14e-08

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 47.94  E-value: 7.14e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 446387271   150 AEAKYYLGILYEEGYGVTQDYKKAFEWYSKAAAQNY 185
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
150-184 1.19e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 44.43  E-value: 1.19e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 446387271  150 AEAKYYLGILYEEGYGVTQDYKKAFEWYSKAAAQN 184
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
223-257 1.70e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 43.70  E-value: 1.70e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 446387271   223 KAQNNLGAIYALGIGVNQDYKKAFEWYSKAAQQEN 257
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
186-221 2.03e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 43.70  E-value: 2.03e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 446387271   186 ADAQNNLAALYAQGKGVELNNKKAFELYSKAAEQGN 221
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
42-77 2.15e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 43.70  E-value: 2.15e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 446387271    42 AGAQAKLGELYVEGQVVPQDYKKAFKWYSKAANQGN 77
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
44-76 2.80e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 43.28  E-value: 2.80e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 446387271   44 AQAKLGELYVEGQVVPQDYKKAFKWYSKAANQG 76
Cdd:pfam08238   3 AQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
259-293 3.25e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.93  E-value: 3.25e-06
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 446387271   259 EAQFTVGMMYYKGEGVQQNNELAEKWLRKAAENGN 293
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
114-149 6.79e-06

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.16  E-value: 6.79e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 446387271   114 VKAQNNLGAYYANGDGGVKNYQKAFEWYSKAATQDN 149
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
223-255 1.86e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 40.97  E-value: 1.86e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 446387271  223 KAQNNLGAIYALGIGVNQDYKKAFEWYSKAAQQ 255
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAEL 34
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
186-220 3.89e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 40.20  E-value: 3.89e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 446387271  186 ADAQNNLAALYAQGKGVELNNKKAFELYSKAAEQG 220
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
114-148 4.56e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.81  E-value: 4.56e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 446387271  114 VKAQNNLGAYYANGDGGVKNYQKAFEWYSKAATQD 148
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
72-189 4.87e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 4.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271  72 AANQGNAEAQNNLGAMYAlgqgVEQNYKKAFEWYSKAAE--QGEVKAQNNLG-AYYANGDggvknYQKAFEWYSKAATQD 148
Cdd:COG4235   11 AANPNDAEGWLLLGRAYL----RLGRYDEALAAYEKALRldPDNADALLDLAeALLAAGD-----TEEAEELLERALALD 81
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 446387271 149 --NAEAKYYLGILYEEgygvTQDYKKAFEWYSKAAAQNYADAQ 189
Cdd:COG4235   82 pdNPEALYLLGLAAFQ----QGDYAEAIAAWQKLLALLPADAP 120
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
259-292 5.08e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.81  E-value: 5.08e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 446387271  259 EAQFTVGMMYYKGEGVQQNNELAEKWLRKAAENG 292
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
148-261 6.43e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 6.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446387271 148 DNAEAKYYLGILYEEgygvTQDYKKAFEWYSKAAA--QNYADAQNNLAALYAQGKgvelNNKKAFELYSKAAEQ--GNEK 223
Cdd:COG4235   15 NDAEGWLLLGRAYLR----LGRYDEALAAYEKALRldPDNADALLDLAEALLAAG----DTEEAEELLERALALdpDNPE 86
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 446387271 224 AQNNLGAIYALgigvNQDYKKAFEWYSKAAQQENDEAQ 261
Cdd:COG4235   87 ALYLLGLAAFQ----QGDYAEAIAAWQKLLALLPADAP 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH