NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446394467|ref|WP_000472322|]
View 

YhfL family protein [Salmonella bongori]

Protein Classification

YhfL family protein( domain architecture ID 10623702)

YhfL family protein is a DUF4223 domain-containing protein similar to Escherichia coli protein YhfL

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4223 pfam13978
Protein of unknown function (DUF4223); This family of proteins is functionally uncharacterized. ...
 1-54 6.51e-28

Protein of unknown function (DUF4223); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. These proteins are likely to be lipoproteins (attachment site currently included in alignment).


:

Pssm-ID: 433620  Cd Length: 54  Bit Score: 94.14  E-value: 6.51e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446394467   1 MFKFVKIAVVAGVLASLTACTGHIENKKNNCSYDYLLHPAISISKIIGGCGPAA 54
Cdd:pfam13978  1 MKKLFKAAVVAAVVATLSGCTGHVENKPKNCSYDYLLHPAISISKIIGGCGPAA 54
 
Name Accession Description Interval E-value
DUF4223 pfam13978
Protein of unknown function (DUF4223); This family of proteins is functionally uncharacterized. ...
 1-54 6.51e-28

Protein of unknown function (DUF4223); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. These proteins are likely to be lipoproteins (attachment site currently included in alignment).


Pssm-ID: 433620  Cd Length: 54  Bit Score: 94.14  E-value: 6.51e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446394467   1 MFKFVKIAVVAGVLASLTACTGHIENKKNNCSYDYLLHPAISISKIIGGCGPAA 54
Cdd:pfam13978  1 MKKLFKAAVVAAVVATLSGCTGHVENKPKNCSYDYLLHPAISISKIIGGCGPAA 54
 
Name Accession Description Interval E-value
DUF4223 pfam13978
Protein of unknown function (DUF4223); This family of proteins is functionally uncharacterized. ...
 1-54 6.51e-28

Protein of unknown function (DUF4223); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. These proteins are likely to be lipoproteins (attachment site currently included in alignment).


Pssm-ID: 433620  Cd Length: 54  Bit Score: 94.14  E-value: 6.51e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446394467   1 MFKFVKIAVVAGVLASLTACTGHIENKKNNCSYDYLLHPAISISKIIGGCGPAA 54
Cdd:pfam13978  1 MKKLFKAAVVAAVVATLSGCTGHVENKPKNCSYDYLLHPAISISKIIGGCGPAA 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH