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Conserved domains on  [gi|446402267|ref|WP_000480122|]
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flagellar basal body rod protein FlgC [Helicobacter pylori]

Protein Classification

flagellar basal body rod protein FlgC( domain architecture ID 11481481)

flagellar basal body rod protein FlgC forms, together with FlgB and FlgF the proximal portion of the central rod at the core of the flagellar organelle's basal body

Gene Ontology:  GO:0071973

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 2-160 1.00e-66

flagellar basal body rod protein FlgC; Reviewed


:

Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 199.28  E-value: 1.00e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   2 FLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqitpyedPLDEGDdnp 81
Cdd:PRK05681   3 LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAA----------------------ELDPGQ--- 57

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446402267  82 liPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ 160
Cdd:PRK05681  58 --GTGGVKVAKIVEDQSPFKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
 
Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 2-160 1.00e-66

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 199.28  E-value: 1.00e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   2 FLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqitpyedPLDEGDdnp 81
Cdd:PRK05681   3 LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAA----------------------ELDPGQ--- 57

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446402267  82 liPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ 160
Cdd:PRK05681  58 --GTGGVKVAKIVEDQSPFKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
2-160 4.59e-62

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 187.24  E-value: 4.59e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   2 FLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqitpyedpldeGDDNP 81
Cdd:COG1558    3 LFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEA--------------------------VLDRA 56

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446402267  82 LIPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ 160
Cdd:COG1558   57 GSGAAGVRVAGIVEDDSPFRLVYDPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 3-160 7.35e-57

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 174.47  E-value: 7.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267    3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqiTPYEDPLDEGddnpl 82
Cdd:TIGR01395   1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEA-----------------ELFQDRASRP----- 58

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446402267   83 iPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ 160
Cdd:TIGR01395  59 -GGSGVKVAKIVEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 113-158 3.93e-11

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 55.73  E-value: 3.93e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 446402267  113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158
Cdd:pfam06429  29 QQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 2-160 1.00e-66

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 199.28  E-value: 1.00e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   2 FLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqitpyedPLDEGDdnp 81
Cdd:PRK05681   3 LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAA----------------------ELDPGQ--- 57

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446402267  82 liPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ 160
Cdd:PRK05681  58 --GTGGVKVAKIVEDQSPFKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
2-160 4.59e-62

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 187.24  E-value: 4.59e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   2 FLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqitpyedpldeGDDNP 81
Cdd:COG1558    3 LFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEA--------------------------VLDRA 56

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446402267  82 LIPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ 160
Cdd:COG1558   57 GSGAAGVRVAGIVEDDSPFRLVYDPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 3-160 7.35e-57

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 174.47  E-value: 7.35e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267    3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqiTPYEDPLDEGddnpl 82
Cdd:TIGR01395   1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEA-----------------ELFQDRASRP----- 58

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446402267   83 iPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ 160
Cdd:TIGR01395  59 -GGSGVKVAKIVEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
flgC PRK12630
flagellar basal body rod protein FlgC; Provisional
 4-156 4.55e-42

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183635  Cd Length: 143  Bit Score: 137.27  E-value: 4.55e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   4 SSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRafdfnEVLNQKIaqNNQITPYEDPLdegddnpli 83
Cdd:PRK12630   5 DTMRISASGLSAERLRMDTIASNIANATTTRTADGGPYKRKIAVFQ-----ENLNKEL--NKKNGAYEKKL--------- 68

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446402267  84 piTSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156
Cdd:PRK12630  69 --YGVKAVGIVEDKSPFRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAINAEKSMFSKAL 139
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 4-161 8.84e-29

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 102.92  E-value: 8.84e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   4 SSFDISGYGLSAQRLRANLISSNIANANTT-RTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqitpyedPLDEGDDNPL 82
Cdd:PRK12782   7 ASSRIASSGLEAQSTRLRVVSENLANAQSTgRTPGADPYARKTVTFRA----------------------ELDRAAGAAS 64

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446402267  83 IPITSVVVDKivrddSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQT 161
Cdd:PRK12782  65 VRVKEIGVDT-----APFRVEYDPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVAMTIDLLRS 138
flgC PRK12631
flagellar basal body rod protein FlgC; Provisional
 6-158 1.41e-25

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183636  Cd Length: 138  Bit Score: 95.03  E-value: 1.41e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   6 FDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfneVLNQKIAQNNQITpyedpldegddnplipi 85
Cdd:PRK12631   7 FDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEA-----EMAKAQSQQQASQ----------------- 64

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446402267  86 tSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158
Cdd:PRK12631  65 -GVAVKGIVESDKPLLKEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRM 136
flgC PRK12629
flagellar basal body rod protein FlgC; Provisional
 3-158 1.69e-23

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183634  Cd Length: 135  Bit Score: 89.37  E-value: 1.69e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   3 LSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkiaqnnqITPYEDPldegddnpl 82
Cdd:PRK12629   4 LPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQA----------------QQSRQDP--------- 58

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446402267  83 iPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158
Cdd:PRK12629  59 -SLTSVNVKEITTTNAPPIRRYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTM 133
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 2-153 1.06e-22

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 87.55  E-value: 1.06e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   2 FLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAfdfnevlnqkIAQNNQITpyedpldegdDNP 81
Cdd:PRK06802   3 FNDIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATAYKARSPVFAA----------VYSARTLA----------DPR 62

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446402267  82 LIPITSVVVDKIVRDDSEPlMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQ 153
Cdd:PRK06802  63 GVQGAQVQVLDVVQVGGSV-KRYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNSVKSMQQ 133
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 2-160 5.69e-19

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 77.54  E-value: 5.69e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   2 FLSSFDISGYGLSAQRLRANLISSNIANANTTrtseggPYRRQeavfrafdfnevlnqkiaqnnqITPYEDPLDEGDDnp 81
Cdd:PRK12632   4 FSKSLSVSASGMRAQALRLRHVSENIANADTP------GYRRK----------------------TVSFQEARDFDPG-- 53

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446402267  82 lipITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQ 160
Cdd:PRK12632  54 ---SGLVSTGPVRLDRSELPRIYDPSHPLADETGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQMSSSLLDLLR 129
flgC PRK12628
flagellar basal body rod protein FlgC; Provisional
 6-158 1.14e-15

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 79089  Cd Length: 140  Bit Score: 69.49  E-value: 1.14e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   6 FDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAFDFNEvlNQKIAQNNQitpyedpldegddnplipi 85
Cdd:PRK12628   7 FDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPVFKSVQENA--NQWMGEQIK------------------- 65

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446402267  86 TSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158
Cdd:PRK12628  66 AGVKLDGIYESDAEPHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQL 138
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 113-158 3.93e-11

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 55.73  E-value: 3.93e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 446402267  113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158
Cdd:pfam06429  29 QQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
4-156 2.81e-09

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 52.22  E-value: 2.81e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267   4 SSFDISGYGLSAQRLRANLISSNIANANTtrtseggP-YRRQEavfraFDFNEVLNQKIAQNNQITpyedPLDEGDDN-- 80
Cdd:COG1815    7 KTFGLLEKALDLRSLRQEVIASNIANADT-------PgYKARD-----VDFEAALKAALGGGSAGL----ALATTNPRhi 70

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446402267  81 PLIPITSVVVDKIVRDDSEPLmkydpshPDANaqgyvaypNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156
Cdd:COG1815   71 PGSAGSSVSPEVLYRTPTQPS-------LDGN--------TVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAI 131
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 113-159 1.36e-06

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 46.58  E-value: 1.36e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 446402267  113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGML 159
Cdd:TIGR02488 213 RQGFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
114-159 1.90e-06

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 45.96  E-value: 1.90e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 446402267 114 QGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGML 159
Cdd:COG4786  214 QGYLEGSNVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLR 259
flgF PRK12689
flagellar basal-body rod protein FlgF;
105-156 1.62e-05

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 43.20  E-value: 1.62e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 446402267 105 DPSHPDANA---QGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156
Cdd:PRK12689 191 PARPADTKArveQGYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTAI 245
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 113-159 2.74e-05

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 42.54  E-value: 2.74e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 446402267 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGML 159
Cdd:PRK12693 215 RQGFLETSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
12-96 5.62e-05

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 41.72  E-value: 5.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267  12 GLSAQRLRANLISSNIANANTTrtseGgpYRRQEAVFRAFdFNEVLNQKIAQNNQITPYEDPLDEGddnplipiTSVVVD 91
Cdd:COG4786    7 GMLAQQTRLDVISNNLANVNTT----G--FKRDRAVFEDL-LYQLIRRPGAPSSQGTQTPVGLQLG--------TGVRVA 71


                 ....*
gi 446402267  92 KIVRD 96
Cdd:COG4786   72 ATQTD 76
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 113-141 1.31e-04

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 40.70  E-value: 1.31e-04
                          10        20
                  ....*....|....*....|....*....
gi 446402267  113 AQGYVAYPNVNAVVEMADLVEATRAYQAN 141
Cdd:TIGR03506 203 VSGALEGSNVDLAEELVNMISAQRAYQAN 231
flgF PRK12642
flagellar basal-body rod protein FlgF;
113-159 1.47e-04

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 40.42  E-value: 1.47e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 446402267 113 AQGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGML 159
Cdd:PRK12642 191 VQGYLEGSNVNAMTEMTQLISVSRAFESVSSLMRQSESSVSEAIKTL 237
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 114-158 2.12e-04

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 40.18  E-value: 2.12e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 446402267 114 QGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158
Cdd:PRK12816 218 QGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNL 262
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 114-139 4.32e-04

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 37.22  E-value: 4.32e-04
                          10        20
                  ....*....|....*....|....*.
gi 446402267  114 QGYVAYPNVNAVVEMADLVEATRAYQ 139
Cdd:TIGR02490  64 QGYLEGSNVNAVSEMVDMIEAQRAYE 89
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
4-50 6.72e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 38.71  E-value: 6.72e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 446402267   4 SSFDISGYGLSAQRLRANLISSNIANANTtrtsEGgpYRRQEAVFRA 50
Cdd:COG1256    4 SALNIALSGLNAAQRALDVTSHNIANANT----PG--YSRQRVVLSA 44
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-70 1.67e-03

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 37.23  E-value: 1.67e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446402267    4 SSFDISGYGLSAQRLRANLISSNIANANTTrtseGgpYRRQEAVFRafdfnEVLNQKIAQNNQITPY 70
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTT----G--FKRSRAEFQ-----DLLSQSVSGSGQVGGG 56
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 114-153 1.85e-03

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 37.52  E-value: 1.85e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 446402267 114 QGYVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQ 153
Cdd:PRK12692 216 QGYLEGSNVDPVKEITSLITAQRAFEMNSKVIQAADEMAG 255
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 4-50 2.41e-03

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 37.33  E-value: 2.41e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 446402267    4 SSFDISGYGLSAQRLRANLISSNIANANTtrtsEGgpYRRQEAVFRA 50
Cdd:TIGR02492   1 SLLNIAKSGLSASQIALSVTSNNIANANT----PG--YSRQRAVLTA 41
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 8-48 3.02e-03

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 36.76  E-value: 3.02e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 446402267   8 ISGYGLSAQRLRANLISSNIANANTTrtseggPYRRQEAVF 48
Cdd:PRK12693   7 IAKTGLDAQQTNIDVISNNLANVNTT------GFKKSRAVF 41
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 84-160 3.11e-03

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 36.76  E-value: 3.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446402267  84 PITSVVVDKI--VRDDSEPLMKYD----------PSHPDANAQ---GYVAYPNVNAVVEMADLVEATRAYQANVAAFQSA 148
Cdd:PRK12640 153 PNAVAEVGRLklVNPPAAQLTRGDdglfrttdgaPAPADPTVRvmsGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTA 232

                         90
                 ....*....|..
gi 446402267 149 KNMAQNAIGMLQ 160
Cdd:PRK12640 233 DENAQAANQLLR 244
Flg_bb_rod pfam00460
Flagella basal body rod protein;
6-34 5.66e-03

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 32.92  E-value: 5.66e-03
                          10        20
                  ....*....|....*....|....*....
gi 446402267    6 FDISGYGLSAQRLRANLISSNIANANTTR 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPG 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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