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Conserved domains on  [gi|446411718|ref|WP_000489573|]
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MULTISPECIES: protein YmdA [Escherichia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimA super family cl43894
Pilin (type 1 fimbrial protein) [Cell motility];
7-54 4.56e-04

Pilin (type 1 fimbrial protein) [Cell motility];


The actual alignment was detected with superfamily member COG3539:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 37.33  E-value: 4.56e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446411718   7 NSLMLGSLFFPFIAIAESTAQGGVIHFYGQIVEPACDVSTQSSPVEMN 54
Cdd:COG3539    2 KKLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVD 49
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
7-54 4.56e-04

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 37.33  E-value: 4.56e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446411718   7 NSLMLGSLFFPFIAIAESTAQGGVIHFYGQIVEPACDVSTQSSPVEMN 54
Cdd:COG3539    2 KKLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVD 49
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
1-49 4.74e-03

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 34.54  E-value: 4.74e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446411718   1 MFRPFLNSLMLGSLFFPFIAIAES----TAQGGVIHFYGQIVEPACDVSTQSS 49
Cdd:PRK15194   1 MKLRFISSAIASLLFVAGAAYAADptpvSVDGGTIHFEGELVNAACSVNTDSA 53
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
7-54 4.56e-04

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 37.33  E-value: 4.56e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446411718   7 NSLMLGSLFFPFIAIAESTAQGGVIHFYGQIVEPACDVSTQSSPVEMN 54
Cdd:COG3539    2 KKLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVD 49
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
1-49 4.74e-03

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 34.54  E-value: 4.74e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446411718   1 MFRPFLNSLMLGSLFFPFIAIAES----TAQGGVIHFYGQIVEPACDVSTQSS 49
Cdd:PRK15194   1 MKLRFISSAIASLLFVAGAAYAADptpvSVDGGTIHFEGELVNAACSVNTDSA 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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