NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446411724|ref|WP_000489579|]
View 

MULTISPECIES: protein YmdA [Enterobacteriaceae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FimA super family cl43894
Pilin (type 1 fimbrial protein) [Cell motility];
7-54 3.92e-04

Pilin (type 1 fimbrial protein) [Cell motility];


The actual alignment was detected with superfamily member COG3539:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 37.33  E-value: 3.92e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446411724   7 NSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMN 54
Cdd:COG3539    2 KKLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVD 49
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
7-54 3.92e-04

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 37.33  E-value: 3.92e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446411724   7 NSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMN 54
Cdd:COG3539    2 KKLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVD 49
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
28-49 6.24e-03

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 34.16  E-value: 6.24e-03
                         10        20
                 ....*....|....*....|..
gi 446411724  28 GGVIHFYGQIVEPACDVSTQSS 49
Cdd:PRK15194  32 GGTIHFEGELVNAACSVNTDSA 53
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
7-54 3.92e-04

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 37.33  E-value: 3.92e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446411724   7 NSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDVSTQSSPVEMN 54
Cdd:COG3539    2 KKLLLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVD 49
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
28-49 6.24e-03

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 34.16  E-value: 6.24e-03
                         10        20
                 ....*....|....*....|..
gi 446411724  28 GGVIHFYGQIVEPACDVSTQSS 49
Cdd:PRK15194  32 GGTIHFEGELVNAACSVNTDSA 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH