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Conserved domains on  [gi|446422246|ref|WP_000500101|]
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MULTISPECIES: DUF3947 family protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3947 super family cl16123
Protein of unknown function (DUF3947); This family of proteins is functionally uncharacterized. ...
 2-83 2.38e-12

Protein of unknown function (DUF3947); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


The actual alignment was detected with superfamily member pfam13135:

Pssm-ID: 289880  Cd Length: 91  Bit Score: 56.77  E-value: 2.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446422246   2 FYSYFN--SQAGMRPAYGTSITYSGAQSTVQAIQQA---LQMQQQMQMQQQGVQPYYSSVEYFYPV----HHVTPYGSSF 72
Cdd:pfam13135  1 FNHHFYnaRQVGMRPAYGAAITLAGAQGTIHAMNQAiqmQQQAYFAQMMQQGIMPYSQSMEYFLPMqivhYDIHPAGGSF 80

                         90
                 ....*....|.
gi 446422246  73 LTIPYGTVYNL 83
Cdd:pfam13135 81 FSIPYGATFFL 91
 
Name Accession Description Interval E-value
DUF3947 pfam13135
Protein of unknown function (DUF3947); This family of proteins is functionally uncharacterized. ...
 2-83 2.38e-12

Protein of unknown function (DUF3947); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 289880  Cd Length: 91  Bit Score: 56.77  E-value: 2.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446422246   2 FYSYFN--SQAGMRPAYGTSITYSGAQSTVQAIQQA---LQMQQQMQMQQQGVQPYYSSVEYFYPV----HHVTPYGSSF 72
Cdd:pfam13135  1 FNHHFYnaRQVGMRPAYGAAITLAGAQGTIHAMNQAiqmQQQAYFAQMMQQGIMPYSQSMEYFLPMqivhYDIHPAGGSF 80

                         90
                 ....*....|.
gi 446422246  73 LTIPYGTVYNL 83
Cdd:pfam13135 81 FSIPYGATFFL 91
 
Name Accession Description Interval E-value
DUF3947 pfam13135
Protein of unknown function (DUF3947); This family of proteins is functionally uncharacterized. ...
 2-83 2.38e-12

Protein of unknown function (DUF3947); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.


Pssm-ID: 289880  Cd Length: 91  Bit Score: 56.77  E-value: 2.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446422246   2 FYSYFN--SQAGMRPAYGTSITYSGAQSTVQAIQQA---LQMQQQMQMQQQGVQPYYSSVEYFYPV----HHVTPYGSSF 72
Cdd:pfam13135  1 FNHHFYnaRQVGMRPAYGAAITLAGAQGTIHAMNQAiqmQQQAYFAQMMQQGIMPYSQSMEYFLPMqivhYDIHPAGGSF 80

                         90
                 ....*....|.
gi 446422246  73 LTIPYGTVYNL 83
Cdd:pfam13135 81 FSIPYGATFFL 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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