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Conserved domains on  [gi|446429251|ref|WP_000507106|]
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MULTISPECIES: D-allose ABC transporter permease [Enterobacteriaceae]

Protein Classification

ABC transporter permease; ribose ABC transporter permease( domain architecture ID 10793305)

ABC transporter permease is the transmembrane subunit (TM) found in type 1 periplasmic-binding protein (PBP1)-dependent ATP-binding cassette (ABC) transporters which generally involved in the uptake of a broad range of substrates including metal ions, amino acids, sugars and peptides| ribose ABC transporter permease is part of the ABC transporter complex RbsABC involved in ribose import

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09699 PRK09699
D-allose ABC transporter permease;
15-326 1.74e-178

D-allose ABC transporter permease;


:

Pssm-ID: 182035 [Multi-domain]  Cd Length: 312  Bit Score: 495.83  E-value: 1.74e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  15 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 94
Cdd:PRK09699   1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  95 AKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI 174
Cdd:PRK09699  81 AKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 175 GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 254
Cdd:PRK09699 161 GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446429251 255 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:PRK09699 241 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 312
 
Name Accession Description Interval E-value
PRK09699 PRK09699
D-allose ABC transporter permease;
15-326 1.74e-178

D-allose ABC transporter permease;


Pssm-ID: 182035 [Multi-domain]  Cd Length: 312  Bit Score: 495.83  E-value: 1.74e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  15 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 94
Cdd:PRK09699   1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  95 AKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI 174
Cdd:PRK09699  81 AKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 175 GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 254
Cdd:PRK09699 161 GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446429251 255 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:PRK09699 241 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 312
AraH COG1172
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ...
 9-326 1.25e-90

Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440785  Cd Length: 322  Bit Score: 273.14  E-value: 1.25e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251   9 SEASEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPeYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILA 88
Cdd:COG1172    2 SATTTTARSLLRRLLPELGLLLALVLLLVVFSILSP-GFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  89 LSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNF 168
Cdd:COG1172   81 LSGVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRAL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 169 FAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGA 248
Cdd:COG1172  161 GQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446429251 249 AEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:COG1172  241 AQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
TM_PBP1_transp_AraH_like cd06579
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ...
 60-321 6.01e-76

Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.


Pssm-ID: 119321 [Multi-domain]  Cd Length: 263  Bit Score: 233.84  E-value: 6.01e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  60 SSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITL 139
Cdd:cd06579    1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 140 GTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI-GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGI 218
Cdd:cd06579   81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLIlGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 219 DVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNI 298
Cdd:cd06579  161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240

                        250       260
                 ....*....|....*....|...
gi 446429251 299 LQVQTYYQLVVMGGLIIAAVALD 321
Cdd:cd06579  241 LGVSSFWQQIVKGAILLLAVALD 263
GguB NF040906
sugar ABC transporter permease;
25-321 1.22e-44

sugar ABC transporter permease;


Pssm-ID: 468841 [Multi-domain]  Cd Length: 375  Bit Score: 156.46  E-value: 1.22e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  25 KYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDP 104
Cdd:NF040906   4 QYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMP 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 105 FLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAAS------------ 172
Cdd:NF040906  84 WWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFlpdlfggtglhl 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 173 ---VIGIPVPVIF----------------------------SLIVALILW--------------------------FLTT 195
Cdd:NF040906 164 ltlLLGVLAAAALvwsqlrgrrrrikyglevepmalfiaklVLIAAAILFftyllasyrglpnvliilgvlilvysFVTN 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 196 RMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGG 275
Cdd:NF040906 244 RTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGG 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 446429251 276 KGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:NF040906 324 VGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
BPD_transp_2 pfam02653
Branched-chain amino acid transport system / permease component; This is a large family mainly ...
 52-318 2.80e-32

Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.


Pssm-ID: 396977 [Multi-domain]  Cd Length: 269  Bit Score: 120.83  E-value: 2.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251   52 NITQIFVQSSVTVLIGMGEFFAILVAG-IDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWT 130
Cdd:pfam02653   1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  131 GLHPFIITLGTNAIFRGITL-----------VISDANSVYGFSFDFVNFFAASVigipvpVIFSLIVALILWFLTTRMRL 199
Cdd:pfam02653  81 KINEVIITLLLNLAALGLALflvtgilggegGTSGITGPSGFPGAFLSFAFAFI------FLLALLLVLALWLLLYRTKF 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  200 GRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP-LAGMGFETYAIASAIIggtsffGGKGR 278
Cdd:pfam02653 155 GRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVL------GGAGS 228

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 446429251  279 IFSVVIGGLIIGTINN-GLNILQVQTYYQLVVMGGLIIAAV 318
Cdd:pfam02653 229 PIGVVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
 
Name Accession Description Interval E-value
PRK09699 PRK09699
D-allose ABC transporter permease;
15-326 1.74e-178

D-allose ABC transporter permease;


Pssm-ID: 182035 [Multi-domain]  Cd Length: 312  Bit Score: 495.83  E-value: 1.74e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  15 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 94
Cdd:PRK09699   1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  95 AKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI 174
Cdd:PRK09699  81 AKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 175 GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 254
Cdd:PRK09699 161 GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446429251 255 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:PRK09699 241 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 312
AraH COG1172
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ...
 9-326 1.25e-90

Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440785  Cd Length: 322  Bit Score: 273.14  E-value: 1.25e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251   9 SEASEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPeYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILA 88
Cdd:COG1172    2 SATTTTARSLLRRLLPELGLLLALVLLLVVFSILSP-GFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  89 LSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNF 168
Cdd:COG1172   81 LSGVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRAL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 169 FAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGA 248
Cdd:COG1172  161 GQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446429251 249 AEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:COG1172  241 AQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
TM_PBP1_transp_AraH_like cd06579
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ...
 60-321 6.01e-76

Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.


Pssm-ID: 119321 [Multi-domain]  Cd Length: 263  Bit Score: 233.84  E-value: 6.01e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  60 SSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITL 139
Cdd:cd06579    1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 140 GTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI-GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGI 218
Cdd:cd06579   81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLIlGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 219 DVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNI 298
Cdd:cd06579  161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240

                        250       260
                 ....*....|....*....|...
gi 446429251 299 LQVQTYYQLVVMGGLIIAAVALD 321
Cdd:cd06579  241 LGVSSFWQQIVKGAILLLAVALD 263
COG4158 COG4158
Predicted ABC-type sugar transport system, permease component [General function prediction ...
 11-323 2.19e-69

Predicted ABC-type sugar transport system, permease component [General function prediction only];


Pssm-ID: 443324  Cd Length: 334  Bit Score: 219.42  E-value: 2.19e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  11 ASEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPeYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALS 90
Cdd:COG4158   15 PAAARRFRLRSLLQAVGMLPVLILLCIGFELLTP-NFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAAS 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  91 GMVTAKLMLAGvDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFA 170
Cdd:COG4158   94 AVVAVLVSLLP-GLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGN 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 171 ASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAE 250
Cdd:COG4158  173 GYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAAN 252

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446429251 251 PL-AGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 323
Cdd:COG4158  253 GLqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRY 326
XylH COG4214
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
26-321 1.04e-67

ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443360 [Multi-domain]  Cd Length: 393  Bit Score: 216.91  E-value: 1.04e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  26 YGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPF 105
Cdd:COG4214   25 LGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNWGLPW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 106 LAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV--------------------------- 158
Cdd:COG4214  105 WLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIapfdptfqaigngflpdilgtlswvlg 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 159 --------------------YGFSFDFVNFFAASVI-----------------GIPVPVIFSLIVALILWFLTTRMRLGR 201
Cdd:COG4214  185 avavaayvalqlrsrrrrrrYGLPVEPLWLFVLKLAllavlilgavyllnsyrGIPIVVLILLVLVVVYTFVLTRTVFGR 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 202 NIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFS 281
Cdd:COG4214  265 HIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYG 344

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 446429251 282 VVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:COG4214  345 AVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFD 384
rbsC PRK09512
ribose ABC transporter permease protein; Reviewed
 9-321 1.48e-65

ribose ABC transporter permease protein; Reviewed


Pssm-ID: 181922 [Multi-domain]  Cd Length: 320  Bit Score: 209.19  E-value: 1.48e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251   9 SEASEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFlTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILA 88
Cdd:PRK09512   2 TQTVSGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFF-TVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  89 LSGMVTAKLMLAGVdPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV-YGFSFD--- 164
Cdd:PRK09512  81 LTGAVAASIVGIEV-NALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDNadl 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 165 FVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTA 244
Cdd:PRK09512 160 FGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVA 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446429251 245 RLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:PRK09512 240 RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
MglC COG4211
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ...
 12-321 1.62e-58

ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443358  Cd Length: 336  Bit Score: 191.26  E-value: 1.62e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  12 SEKKPFNFALFWDKYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSG 91
Cdd:COG4211    2 KKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPN-FLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  92 MVTAKLMLA-----------GVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISD---ANS 157
Cdd:COG4211   81 VISASLLQSgdyagkffpnlPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDrpgAQP 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 158 VYGFSFDFVNFFAASVI----GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGV 233
Cdd:COG4211  161 IGGLDESFTNFAQGSINiggfGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 234 CAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGL 313
Cdd:COG4211  241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320


                 ....*...
gi 446429251 314 IIAAVALD 321
Cdd:COG4211  321 IIAAVALD 328
mglC PRK09478
galactose/methyl galactoside ABC transporter permease MglC;
18-323 1.04e-49

galactose/methyl galactoside ABC transporter permease MglC;


Pssm-ID: 181892 [Multi-domain]  Cd Length: 336  Bit Score: 168.71  E-value: 1.04e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  18 NFALFWDKYGTFFILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKL 97
Cdd:PRK09478   8 SFLTYLKEGGIYVVLLVLLAIIIIQDPT-FLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  98 MLA-----------GVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISD---ANSVYGFSF 163
Cdd:PRK09478  87 LQSmdnankvfpelATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGFDS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 164 DFVNF----FAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAG 239
Cdd:PRK09478 167 GFSTFaqgfVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGG 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 240 VVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVA 319
Cdd:PRK09478 247 MLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVA 326


                 ....
gi 446429251 320 LDRL 323
Cdd:PRK09478 327 LDSL 330
GguB NF040906
sugar ABC transporter permease;
25-321 1.22e-44

sugar ABC transporter permease;


Pssm-ID: 468841 [Multi-domain]  Cd Length: 375  Bit Score: 156.46  E-value: 1.22e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  25 KYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDP 104
Cdd:NF040906   4 QYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMP 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 105 FLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAAS------------ 172
Cdd:NF040906  84 WWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFlpdlfggtglhl 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 173 ---VIGIPVPVIF----------------------------SLIVALILW--------------------------FLTT 195
Cdd:NF040906 164 ltlLLGVLAAAALvwsqlrgrrrrikyglevepmalfiaklVLIAAAILFftyllasyrglpnvliilgvlilvysFVTN 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 196 RMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGG 275
Cdd:NF040906 244 RTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGG 323

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 446429251 276 KGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:NF040906 324 VGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
araH PRK11285
L-arabinose transporter permease protein; Provisional
 9-323 1.63e-44

L-arabinose transporter permease protein; Provisional


Pssm-ID: 183076 [Multi-domain]  Cd Length: 333  Bit Score: 154.84  E-value: 1.63e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251   9 SEASEKKPFNFALFWDKYGTFFILAIIVAIFgSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILA 88
Cdd:PRK11285  13 AAAPPKSRFSLWRIWDQYGMLVVFAVLFIAC-SLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  89 LSGMVTAKLMLAGVDPFLAaMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNF 168
Cdd:PRK11285  92 FAGVVTAVVINATESLWLG-VAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFAL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 169 FAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGA 248
Cdd:PRK11285 171 GYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446429251 249 AEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 323
Cdd:PRK11285 251 GQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRY 325
BPD_transp_2 pfam02653
Branched-chain amino acid transport system / permease component; This is a large family mainly ...
 52-318 2.80e-32

Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.


Pssm-ID: 396977 [Multi-domain]  Cd Length: 269  Bit Score: 120.83  E-value: 2.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251   52 NITQIFVQSSVTVLIGMGEFFAILVAG-IDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWT 130
Cdd:pfam02653   1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  131 GLHPFIITLGTNAIFRGITL-----------VISDANSVYGFSFDFVNFFAASVigipvpVIFSLIVALILWFLTTRMRL 199
Cdd:pfam02653  81 KINEVIITLLLNLAALGLALflvtgilggegGTSGITGPSGFPGAFLSFAFAFI------FLLALLLVLALWLLLYRTKF 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  200 GRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP-LAGMGFETYAIASAIIggtsffGGKGR 278
Cdd:pfam02653 155 GRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVL------GGAGS 228

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 446429251  279 IFSVVIGGLIIGTINN-GLNILQVQTYYQLVVMGGLIIAAV 318
Cdd:pfam02653 229 PIGVVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
PRK15432 PRK15432
autoinducer 2 ABC transporter permease LsrC; Provisional
 31-321 2.65e-29

autoinducer 2 ABC transporter permease LsrC; Provisional


Pssm-ID: 185330 [Multi-domain]  Cd Length: 344  Bit Score: 114.83  E-value: 2.65e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  31 ILAIIVAIF---GSLSPEYFlTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDpFLA 107
Cdd:PRK15432  13 ALLAIVLLFvllGFLDRQYL-SLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYS-LPV 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 108 AMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVA 187
Cdd:PRK15432  91 ACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWLTLILI 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 188 LILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAII 267
Cdd:PRK15432 171 LAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVL 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446429251 268 GGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:PRK15432 251 GGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
PRK11618 PRK11618
inner membrane ABC transporter permease protein YjfF; Provisional
 32-326 2.98e-27

inner membrane ABC transporter permease protein YjfF; Provisional


Pssm-ID: 183235 [Multi-domain]  Cd Length: 317  Bit Score: 108.50  E-value: 2.98e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  32 LAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLA-GVDPFLAAMI 110
Cdd:PRK11618  14 VFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDyGWSPLLAFPL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 111 GGVLVGGALGAInGCLVNWTGLHPFIITLGTNAIFRGITLVIS-DANSVYGFSFDFVNFFAASVIG---IPVPVIFSLIV 186
Cdd:PRK11618  94 VLVMGAAFGAFM-GALIHYLKLPAFIVTLAGMFLARGVSFLVSeESIPINHPFYDTLSSLAWKLPGggrLSAMALIMLAV 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 187 ALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAI 266
Cdd:PRK11618 173 VAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVV 252

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446429251 267 IGGTSFFGGKGRIFSVVIGGLIIGTINNGLNIL-QVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:PRK11618 253 IGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDgTLSSWWTKIVIGILLFVFIALQRGLTV 313
PRK15038 PRK15038
autoinducer 2 ABC transporter permease LsrD;
23-318 5.54e-26

autoinducer 2 ABC transporter permease LsrD;


Pssm-ID: 184998  Cd Length: 330  Bit Score: 105.30  E-value: 5.54e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  23 WDKYGTFFILAIIVAI----FGSLSPEYFlttnNITQIFVQSSVTVLIGMGEF---FAILVAGIDLSVGAILALSGMVTA 95
Cdd:PRK15038   2 RRRYGWELALAALLVIeilaFGLINPRML----DINVLLFSTSDFICIGIVALpltMVIVSGGIDISFGSTIGLCAIALG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  96 KLMLAGVdPFLAAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANS------VYGFSFDFVNFF 169
Cdd:PRK15038  78 VLFQSGV-PMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSGMAGatgyegIGGFPMAFTDFA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 170 AASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAA 249
Cdd:PRK15038 157 NLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSA 236

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446429251 250 EPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAV 318
Cdd:PRK15038 237 RSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
TM_PBP1_branched-chain-AA_like cd06574
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ...
 60-318 4.62e-18

Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.


Pssm-ID: 119320 [Multi-domain]  Cd Length: 266  Bit Score: 82.33  E-value: 4.62e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  60 SSVTVLIGMGEFFAILVAGI-DLSVGAILALSGMVTAKLMLAGVDPFLAaMIGGVLVGGALGAINGCLVNWTGLHPFIIT 138
Cdd:cd06574    1 GLIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLA-LIAAILAGAAAGLVTGFLHTRLKINGLLAG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 139 LGTNAIFRGITLVISDANSVYGFSFD-----FVNFFAASVIGIPVP--VIFSLIVALILWFLttRMRLGRNIYALGGNKN 211
Cdd:cd06574   80 ILIMIGLYSINLRIMGGPNIPLGTRDtllglLLLFGISGTLSIPVVllLIVLLVLFLVIWFL--RTKLGLAMRATGDNPD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 212 SAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSF--FGGKGRIFSVVIGGLII 289
Cdd:cd06574  158 MARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILY 237

                        250       260
                 ....*....|....*....|....*....
gi 446429251 290 GTINNGLNILQVQTYYQLVVMGGLIIAAV 318
Cdd:cd06574  238 RIALALALGSGLIPSDLKLITAGVIVLVL 266
NupP COG4603
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ...
 180-324 4.47e-12

ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];


Pssm-ID: 443653 [Multi-domain]  Cd Length: 356  Bit Score: 65.91  E-value: 4.47e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 180 VIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTA-RLGAAEP--LAGMG 256
Cdd:COG4603  200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgVQGRLTPgfSPGYG 279

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446429251 257 FEtyAIASAIIGGTSFFGgkgrifsVVIGGLIIGTINNGLNILQVQTYYQ----LVVMGGLIIAAVALDRLI 324
Cdd:COG4603  280 FT--GIAVALLGRNNPLG-------IILAALLFGALYVGGDAMQRALGVPseivDVIQGLIILFVLAADFLI 342
TM_PBP1_LivH_like cd06582
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ...
 79-315 8.05e-11

Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.


Pssm-ID: 119324 [Multi-domain]  Cd Length: 272  Bit Score: 61.68  E-value: 8.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  79 IDLSVGAILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALgainGCLVNWTGLHPF--------IITLGTNAIFRGITL 150
Cdd:cd06582   25 INFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALL----GVLLERLVLRPLrgaplltlLITFGGLLILLQGLL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 151 VISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVALI----LWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILV 226
Cdd:cd06582  101 LIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVllaaLYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFAL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 227 VFIISGVCAGLAGVVSTARLGaAEPLAGMGFETYAIASAIIGGTsffggkGRIFSVVIGGLIIGTINNGLNILQVQTYYQ 306
Cdd:cd06582  181 TFALGAALAGLAGVLLAPITG-VSPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLGLAESLAAAYLSSGYKD 253


                 ....*....
gi 446429251 307 LVVMGGLII 315
Cdd:cd06582  254 AVAFVLLIL 262
LivH COG0559
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ...
 79-315 3.45e-10

Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440325 [Multi-domain]  Cd Length: 290  Bit Score: 59.69  E-value: 3.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  79 IDLSVGAILALSGMVTAKLM-LAGVDPFLAAMIGGVLVGGALGAINGCLVNW----TGLHPFIITLGTNAIFRGITLVI- 152
Cdd:COG0559   35 INFAHGEFVMLGAYVAYTLAtLLGLPLWLALLLAVLVAALLGVLLERLVIRPlrgaPPLALLLATIGLSLVLQGLVLLIf 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 153 -SDANSVYGFSFDFVNFFAASVIGIPVPVI-FSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFII 230
Cdd:COG0559  115 gADPRSFPALLSGSVELGGVSIPAYRLFIIvVALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFAL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 231 SGVCAGLAGVVSTARLGaAEPLAGMGFETYAIASAIIGGTsffggkGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVM 310
Cdd:COG0559  195 GAALAGLAGVLLAPIYS-VSPTMGFLLGLKAFAAVVLGGL------GSIPGAVVGGLLLGLAESLGAAYLPSGYKDVVAF 267


                 ....*
gi 446429251 311 GGLII 315
Cdd:COG0559  268 VLLIL 272
TM_PBP1_LivM_like cd06581
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ...
 72-318 5.83e-10

Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.


Pssm-ID: 119323 [Multi-domain]  Cd Length: 268  Bit Score: 58.99  E-value: 5.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  72 FAILVAGIDLSVG----------AILALSGMVTAKLMLAGVDPFLAAMIGGVLVGGALGAINGCLVNWTGLHPF-IITLG 140
Cdd:cd06581    4 YAILALGLNLLLGyagqlslghaAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 141 TNAIFRGITLVISDA-NSVYGFSFDFVNFFAASVIGIPVP-----VIFSLIVALILWFLTtRMRLGRNIYALGGNKNSAF 214
Cdd:cd06581   84 FAEIVRLLALNWSSLtGGSNGLSGIPPPLLGGLLLSSPLAfyylvLAVLLLVLLLLRRLV-RSPFGRALRAIRENEVAAE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 215 YSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP-LAGMGFETYAIASAIIGGTsffggkGRIFSVVIGGLIIGTIN 293
Cdd:cd06581  163 ALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPeSFGFALSIELLLMVVLGGL------GSLLGPVLGAALLVLLP 236

                        250       260
                 ....*....|....*....|....*
gi 446429251 294 NGLNILqvQTYYQLVVMGGLIIAAV 318
Cdd:cd06581  237 ELLRSL--GPGLRLLVFGLLLILVV 259
TM_PBP1_transp_TpRbsC_like cd06580
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ...
 180-304 8.50e-10

Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.


Pssm-ID: 119322 [Multi-domain]  Cd Length: 234  Bit Score: 58.22  E-value: 8.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 180 VIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAG---VVSTARLGAAEPLAGMG 256
Cdd:cd06580   98 LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGaylVLGVQGRFTEGMSAGYG 177

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 446429251 257 FEtyAIASAIIGGTSFFGgkgrifsVVIGGLIIGTINNGLNILQVQTY 304
Cdd:cd06580  178 FI--AIAVALLGRWNPLG-------ILLAALLFGALEAGGIALQRSGG 216
LivM COG4177
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ...
 136-318 2.76e-08

ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443336 [Multi-domain]  Cd Length: 285  Bit Score: 53.93  E-value: 2.76e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 136 IITLGTNAIFRgitLVISDANSVYGFSFDFVNFFAASVIGIPVP---------VIFSLIVALILWFLTtRMRLGRNIYAL 206
Cdd:COG4177   89 IATLAFAEIVR---LLALNLESLTGGADGLSGIPRPTLFGLDLGsplafyylvLALLVLVLLLLRRLV-RSRFGRALRAI 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 207 GGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP-LAGMGFETYAIASAIIGGTsffggkGRIFSVVIG 285
Cdd:COG4177  165 RENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPeSFSFLLSIEILLMVVLGGL------GSLLGPVLG 238

                        170       180       190
                 ....*....|....*....|....*....|...
gi 446429251 286 GLIIGTINNGLNILqvqTYYQLVVMGGLIIAAV 318
Cdd:COG4177  239 AVLLVLLPELLRSL---PEYRLLIFGLLLILVV 268
COG4120 COG4120
ABC-type uncharacterized transport system, permease component [General function prediction ...
 72-288 9.35e-05

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443296  Cd Length: 296  Bit Score: 43.57  E-value: 9.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251  72 FAILVAGI----------DLSVGAILALSGMVTAKLMLAGVDPFLaAMIGGVLVGGALGAINGCLVNWTGLHPFIITLGT 141
Cdd:COG4120   16 YAIMALGVyitfrildfpDLTVDGSFPLGAAVAAVLIVAGVNPFL-ATLAAFLAGALAGLVTGLLHTKLKIPPLLAGILT 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 142 NAIFRGITLVISDANSVYGFSFD--FVNFFAASVIGIPVPVIFSLIVALIL-----WFLTTrmRLGRNIYALGGNKNSAF 214
Cdd:COG4120   95 MTALYSINLRIMGKPNIPLLGEDtiFTLLPDLGLPGDWAKLLVLLVIVLVIkllldWFLKT--ELGLALRATGDNPQMAR 172

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446429251 215 YSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEplAGMGFETYAIA-SAIIGGTSFFGGKG---RIFSVVIGGLI 288
Cdd:COG4120  173 ALGINTDRMKILGLALSNGLVALSGALVAQYQGFAD--VNMGIGTIVIGlASVIIGEVLFGSRSilrRLLAVVLGSIL 248
PRK10740 PRK10740
high-affinity branched-chain amino acid ABC transporter permease LivH;
167-315 2.27e-03

high-affinity branched-chain amino acid ABC transporter permease LivH;


Pssm-ID: 182689 [Multi-domain]  Cd Length: 308  Bit Score: 39.14  E-value: 2.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 167 NFFAASVIGIPVPV-IFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTAR 245
Cdd:PRK10740 147 ENFSASITTMQAVIwIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQF 226

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446429251 246 LGAAEPLAGMGFETYAIASAIIGGTsffggkGRIFSVVIGGLIIGtINNGLNILQVQTYYQLVVMGGLII 315
Cdd:PRK10740 227 YGVINPYIGFMAGMKAFTAAVLGGI------GSIPGAMIGGLILG-IAEALSSAYLSTEYKDVVSFALLI 289
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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