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Conserved domains on  [gi|446444569|ref|WP_000522424|]
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MULTISPECIES: potassium binding protein Kbp [Enterobacteriaceae]

Protein Classification

LysM and BON domain-containing protein( domain architecture ID 11485265)

LysM and BON domain-containing protein similar to Escherichia coli potassium binding protein Kbp (YgaU), a highly specific potassium binding protein that is required for normal growth in the presence of high levels of external K(+)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-148 3.11e-85

LysM domain/BON superfamily protein; Provisional


:

Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 245.98  E-value: 3.11e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446444569   1 MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADkVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGI 80
Cdd:PRK11198   1 MGLFSFVKEAGEKLFDAVTAQADNEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGI 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446444569  81 ASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPE 148
Cdd:PRK11198  80 ASVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
 
Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-148 3.11e-85

LysM domain/BON superfamily protein; Provisional


Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 245.98  E-value: 3.11e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446444569   1 MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADkVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGI 80
Cdd:PRK11198   1 MGLFSFVKEAGEKLFDAVTAQADNEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGI 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446444569  81 ASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPE 148
Cdd:PRK11198  80 ASVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 9-147 1.48e-27

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 100.47  E-value: 1.48e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446444569   9 DAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASvddqvk 88
Cdd:COG1652   28 AAAAALAVVAGLGAAVGAGGALAAALPLAAGLAAAVAAAAAAAVLIAPVAVMRAGAAAKLSPAVTVAEEAAAPS------ 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446444569  89 TATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIP 147
Cdd:COG1652  102 AELAPDAPKTYTVKPGDTLWGIAKRFYGDPARWPEIAEANRDQIKNPDLIYPGQVLRIP 160
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 97-146 5.05e-11

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 54.41  E-value: 5.05e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 446444569  97 QFYTVKSGDTLSAISKQVYGNanlYNKIFEANKpmLKSPDKIYPGQVLRI 146
Cdd:cd00118    1 KTYTVKPGDTLWSIAKKYGVT---VEELAAANP--LINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
98-146 5.22e-10

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 51.68  E-value: 5.22e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 446444569    98 FYTVKSGDTLSAISKQVYGNAnlyNKIFEANKpmLKSPDKIYPGQVLRI 146
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISV---SDLLELNN--ILDPDNLQVGQKLKI 44
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 99-147 8.84e-10

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 50.86  E-value: 8.84e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 446444569   99 YTVKSGDTLSAISKQvYGNAnlYNKIFEANKpmLKSPDkIYPGQVLRIP 147
Cdd:pfam01476   1 YTVKKGDTLSSIAKR-YGIT--VEQLAELNG--LSSPN-LYVGQKLKIP 43
 
Name Accession Description Interval E-value
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 1-148 3.11e-85

LysM domain/BON superfamily protein; Provisional


Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 245.98  E-value: 3.11e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446444569   1 MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADkVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGI 80
Cdd:PRK11198   1 MGLFSFVKEAGEKLFDAVTAQADNEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQEAKEKILLAVGNIQGI 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446444569  81 ASVDDQVKTATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPE 148
Cdd:PRK11198  80 ASVDDQVKVATPAPESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIPE 147
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 9-147 1.48e-27

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 100.47  E-value: 1.48e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446444569   9 DAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASvddqvk 88
Cdd:COG1652   28 AAAAALAVVAGLGAAVGAGGALAAALPLAAGLAAAVAAAAAAAVLIAPVAVMRAGAAAKLSPAVTVAEEAAAPS------ 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446444569  89 TATPATASQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIP 147
Cdd:COG1652  102 AELAPDAPKTYTVKPGDTLWGIAKRFYGDPARWPEIAEANRDQIKNPDLIYPGQVLRIP 160
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 97-146 5.05e-11

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 54.41  E-value: 5.05e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 446444569  97 QFYTVKSGDTLSAISKQVYGNanlYNKIFEANKpmLKSPDKIYPGQVLRI 146
Cdd:cd00118    1 KTYTVKPGDTLWSIAKKYGVT---VEELAAANP--LINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
98-146 5.22e-10

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 51.68  E-value: 5.22e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 446444569    98 FYTVKSGDTLSAISKQVYGNAnlyNKIFEANKpmLKSPDKIYPGQVLRI 146
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISV---SDLLELNN--ILDPDNLQVGQKLKI 44
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 99-147 8.84e-10

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 50.86  E-value: 8.84e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 446444569   99 YTVKSGDTLSAISKQvYGNAnlYNKIFEANKpmLKSPDkIYPGQVLRIP 147
Cdd:pfam01476   1 YTVKKGDTLSSIAKR-YGIT--VEQLAELNG--LSSPN-LYVGQKLKIP 43
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
86-147 1.82e-08

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 50.48  E-value: 1.82e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446444569  86 QVKTATPATASQFYTVKSGDTLSAISKQvYGNAnlYNKIFEANKpmLKSpDKIYPGQVLRIP 147
Cdd:COG1388   99 RRYGAAAAPSPVTYTVKKGDTLWSIARR-YGVS--VEELKRWNG--LSS-DTIRPGQKLKIP 154
BON smart00749
bacterial OsmY and nodulation domain;
29-89 7.41e-08

bacterial OsmY and nodulation domain;


Pssm-ID: 197856 [Multi-domain]  Cd Length: 61  Bit Score: 46.53  E-value: 7.41e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446444569    29 KKVQEHLSKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKT 89
Cdd:smart00749   1 EKVKKALAKDGLIKADSIVVVTDGGVVVLLGGVVDNAEAAAAAAAAAVVGGVKVVVVNLLI 61
OsmY COG2823
Osmotically-inducible protein OsmY, contains BON domain [Cell wall/membrane/envelope ...
 25-96 4.62e-05

Osmotically-inducible protein OsmY, contains BON domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442071 [Multi-domain]  Cd Length: 157  Bit Score: 41.19  E-value: 4.62e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446444569  25 DDQA--KKVQEHLSKTGIPDADKVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATAS 96
Cdd:COG2823   19 DDATieAKVKAALLADPGLDAADINVTVYNGVVTLTGQVPSEAEKDRAEEIARGVPGVKSVVNELRVGPPSRSN 92
OapA COG3061
Cell division protein YtfB/OapA (opacity-associated protein A) [Cell cycle control, cell ...
 87-146 4.35e-04

Cell division protein YtfB/OapA (opacity-associated protein A) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442295 [Multi-domain]  Cd Length: 425  Bit Score: 39.26  E-value: 4.35e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446444569  87 VKTATPATASQFYTVKSGDTLSAISKQvYG-NANLYNKIFEANKPmLKSPDKIYPGQVLRI 146
Cdd:COG3061   60 AAPAAPEGEWQEYTVQSGDTLSQIFRR-LGlSASDLYALLAAEGD-AKPLSRLKPGQELRF 118
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
87-149 2.67e-03

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 37.08  E-value: 2.67e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446444569  87 VKTATPATASQFYTVKSGDTLSAISKQVYGNANLY------NKIFEANK--PMLKSPDKIYPGQVLRIPEE 149
Cdd:COG3170  138 AAEAAPAASGEYYPVRPGDTLWSIAARPVRPSSGVsldqmmVALYRANPdaFIDGNINRLKAGAVLRVPAA 208
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 80-112 4.96e-03

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 36.25  E-value: 4.96e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446444569  80 IASVD-DQVKTATPATASQfYTVKSGDTLSAISK 112
Cdd:PRK10783 327 IAAVQsTLVADNTPLNSRS-YKVRSGDTLSGIAS 359
gpX COG5004
P2-like prophage tail protein X [Mobilome: prophages, transposons];
99-148 6.66e-03

P2-like prophage tail protein X [Mobilome: prophages, transposons];


Pssm-ID: 444028  Cd Length: 69  Bit Score: 33.31  E-value: 6.66e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446444569  99 YTVKSGDTLSAISKQVYGN-ANLYNKIFEANkPMLKSPDKIYP-GQVLRIPE 148
Cdd:COG5004    5 YRTRQGDTLDALCWRYYGRtAGVVEAVLAAN-PGLAALGPVLPaGTVVTLPD 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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