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Conserved domains on  [gi|446444754|ref|WP_000522609|]
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major capsid protein, partial [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_cap_E super family cl20258
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 4-85 3.57e-16

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


The actual alignment was detected with superfamily member pfam03864:

Pssm-ID: 427552  Cd Length: 335  Bit Score: 71.24  E-value: 3.57e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446444754    4 FTTRQLLGYTEQKVKFRALFLELFFRRTvNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHE 83
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDLLFPER-PVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79


                  ..
gi 446444754   84 FN 85
Cdd:pfam03864  80 IT 81
 
Name Accession Description Interval E-value
Phage_cap_E pfam03864
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 4-85 3.57e-16

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


Pssm-ID: 427552  Cd Length: 335  Bit Score: 71.24  E-value: 3.57e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446444754    4 FTTRQLLGYTEQKVKFRALFLELFFRRTvNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHE 83
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDLLFPER-PVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79


                  ..
gi 446444754   84 FN 85
Cdd:pfam03864  80 IT 81
 
Name Accession Description Interval E-value
Phage_cap_E pfam03864
Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the ...
 4-85 3.57e-16

Phage major capsid protein E; Major capsid protein E is involved with the stabilization of the condensed form of the DNA molecule in phage heads.


Pssm-ID: 427552  Cd Length: 335  Bit Score: 71.24  E-value: 3.57e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446444754    4 FTTRQLLGYTEQKVKFRALFLELFFRRTvNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHE 83
Cdd:pfam03864   1 FSTASLTAAINELPNVPGFLGDLLFPER-PVTTTTVAVEVKKGKLKLVPFVSRGAPGTVVDREGRSTRSFEPPHIKPKDV 79


                  ..
gi 446444754   84 FN 85
Cdd:pfam03864  80 IT 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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