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Conserved domains on  [gi|446445810|ref|WP_000523665|]
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MULTISPECIES: SWIM zinc finger domain-containing protein [Staphylococcus]

Protein Classification

SWIM zinc finger domain-containing protein( domain architecture ID 10790860)

SWIM zinc finger domain-containing protein; SWIM domains are versatile and can interact with DNA or proteins in different contexts such as inhibiting DNA damage tolerance in yeast and protein-protein interactions in yeast and humans

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SWIM COG4715
Uncharacterized protein, contains SWIM-type Zn finger domain [Function unknown];
3-142 3.25e-16

Uncharacterized protein, contains SWIM-type Zn finger domain [Function unknown];


:

Pssm-ID: 443750 [Multi-domain]  Cd Length: 508  Bit Score: 74.48  E-value: 3.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446445810   3 LLDIASIRSIERGFNYYQSECVINLkSFSETQHEAEVKGSGNkvYRCYIDMEHPRK--SICNCPHadGRRVICKHMIALL 80
Cdd:COG4715   11 IRRLAGPRIFERGREYAREGRVLDL-DVEDGRLEATVQGSED--YRVRVDLDDGGDldSSCTCPY--GGGGFCKHVVAVL 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446445810  81 FTAspeaankhimmLNEVEEDyqLRRNMWIDSLKEMINDMSEEELRDAYLNMLIEHGEMAEL 142
Cdd:COG4715   86 LAL-----------LDQPEEG--APRQSEREALEELLERLSKEELVELLLELAAEDPELREL 134
 
Name Accession Description Interval E-value
SWIM COG4715
Uncharacterized protein, contains SWIM-type Zn finger domain [Function unknown];
3-142 3.25e-16

Uncharacterized protein, contains SWIM-type Zn finger domain [Function unknown];


Pssm-ID: 443750 [Multi-domain]  Cd Length: 508  Bit Score: 74.48  E-value: 3.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446445810   3 LLDIASIRSIERGFNYYQSECVINLkSFSETQHEAEVKGSGNkvYRCYIDMEHPRK--SICNCPHadGRRVICKHMIALL 80
Cdd:COG4715   11 IRRLAGPRIFERGREYAREGRVLDL-DVEDGRLEATVQGSED--YRVRVDLDDGGDldSSCTCPY--GGGGFCKHVVAVL 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446445810  81 FTAspeaankhimmLNEVEEDyqLRRNMWIDSLKEMINDMSEEELRDAYLNMLIEHGEMAEL 142
Cdd:COG4715   86 LAL-----------LDQPEEG--APRQSEREALEELLERLSKEELVELLLELAAEDPELREL 134
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 47-83 1.43e-05

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 40.09  E-value: 1.43e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 446445810   47 YRCYIDMEHPRKSICNCPHADGRRVICKHMIALLFTA 83
Cdd:pfam04434   1 YRVQLDLDGLEKASCSCPDFQLNGIPCKHALAVLLAL 37
 
Name Accession Description Interval E-value
SWIM COG4715
Uncharacterized protein, contains SWIM-type Zn finger domain [Function unknown];
3-142 3.25e-16

Uncharacterized protein, contains SWIM-type Zn finger domain [Function unknown];


Pssm-ID: 443750 [Multi-domain]  Cd Length: 508  Bit Score: 74.48  E-value: 3.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446445810   3 LLDIASIRSIERGFNYYQSECVINLkSFSETQHEAEVKGSGNkvYRCYIDMEHPRK--SICNCPHadGRRVICKHMIALL 80
Cdd:COG4715   11 IRRLAGPRIFERGREYAREGRVLDL-DVEDGRLEATVQGSED--YRVRVDLDDGGDldSSCTCPY--GGGGFCKHVVAVL 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446445810  81 FTAspeaankhimmLNEVEEDyqLRRNMWIDSLKEMINDMSEEELRDAYLNMLIEHGEMAEL 142
Cdd:COG4715   86 LAL-----------LDQPEEG--APRQSEREALEELLERLSKEELVELLLELAAEDPELREL 134
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 47-83 1.43e-05

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 40.09  E-value: 1.43e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 446445810   47 YRCYIDMEHPRKSICNCPHADGRRVICKHMIALLFTA 83
Cdd:pfam04434   1 YRVQLDLDGLEKASCSCPDFQLNGIPCKHALAVLLAL 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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