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Conserved domains on  [gi|446448372|ref|WP_000526227|]
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MULTISPECIES: glycosyltransferase family 2 protein [Bacillus]

Protein Classification

glycosyltransferase family 2 protein( domain architecture ID 11421633)

glycosyltransferase family 2 protein catalyzes the transfer of saccharide moieties from a donor to an acceptor to form glycosidic bonds

CATH:  3.90.550.10
CAZY:  GT2
EC:  2.4.-.-
Gene Ontology:  GO:0016757|GO:0006486
SCOP:  3000077

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyco_tranf_GTA_type super family cl11394
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
14-105 1.26e-17

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


The actual alignment was detected with superfamily member cd02511:

Pssm-ID: 472172 [Multi-domain]  Cd Length: 229  Bit Score: 81.18  E-value: 1.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  14 KLCLCMIVKNESRIMERCLNATKSIVDFVSICDTGSTDNTPEIIENwckeneiPG-TVHHEPFKNFGYNRSLAVSLAQKt 92
Cdd:cd02511    1 TLSVVIITKNEERNIERCLESVKWAVDEIIVVDSGSTDRTVEIAKE-------YGaKVYQRWWDGFGAQRNFALELATN- 72
                         90
                 ....*....|...
gi 446448372  93 ypeaDYLLILDAD 105
Cdd:cd02511   73 ----DWVLSLDAD 81
LapB super family cl34526
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
189-340 4.27e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG2956:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 4.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372 189 KADKFERDERLLLQGIndpETTPDlHIRYLFYLAQTYFHLSQFENSIKWYKKRVEAGGWVEEVFYSLLRIgfcYEQL--- 265
Cdd:COG2956   54 RRGEYDRAIRIHQKLL---ERDPD-RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI---YEQEgdw 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372 266 --ANRSANKQNEVTDADEK---ETVKGQEEQ-YLALAVFYFQKAWEYRPTRAEPLYQLARLYRLRSQNNIALMYALQGKE 339
Cdd:COG2956  127 ekAIEVLERLLKLGPENAHaycELAELYLEQgDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE 206

                 .
gi 446448372 340 I 340
Cdd:COG2956  207 Q 207
 
Name Accession Description Interval E-value
Beta4Glucosyltransferase cd02511
UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of ...
14-105 1.26e-17

UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.


Pssm-ID: 133005 [Multi-domain]  Cd Length: 229  Bit Score: 81.18  E-value: 1.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  14 KLCLCMIVKNESRIMERCLNATKSIVDFVSICDTGSTDNTPEIIENwckeneiPG-TVHHEPFKNFGYNRSLAVSLAQKt 92
Cdd:cd02511    1 TLSVVIITKNEERNIERCLESVKWAVDEIIVVDSGSTDRTVEIAKE-------YGaKVYQRWWDGFGAQRNFALELATN- 72
                         90
                 ....*....|...
gi 446448372  93 ypeaDYLLILDAD 105
Cdd:cd02511   73 ----DWVLSLDAD 81
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
14-108 7.61e-11

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 61.26  E-value: 7.61e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  14 KLCLCMIVKNESRIMERCLNATKSIVDFVS---ICDTGSTDNTPEIIENWCKENEIPGTVHHEPFKNFGYNRSLAVSLAQ 90
Cdd:COG0463    3 LVSVVIPTYNEEEYLEEALESLLAQTYPDFeiiVVDDGSTDGTAEILRELAAKDPRIRVIRLERNRGKGAARNAGLAAAR 82
                         90
                 ....*....|....*...
gi 446448372  91 ktypeADYLLILDADMIL 108
Cdd:COG0463   83 -----GDYIAFLDADDQL 95
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
16-105 2.52e-08

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 53.17  E-value: 2.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372   16 CLCMIVKNESRIMERCL----NATKSIVDFVsICDTGSTDNTPEIIENWCKENEIPGTVHHEpfKNFGY--NRSLAVSLA 89
Cdd:pfam00535   1 SVIIPTYNEEKYLLETLesllNQTYPNFEII-VVDDGSTDGTVEIAEEYAKKDPRVRVIRLP--ENRGKagARNAGLRAA 77
                          90
                  ....*....|....*.
gi 446448372   90 QktypeADYLLILDAD 105
Cdd:pfam00535  78 T-----GDYIAFLDAD 88
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
189-340 4.27e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 4.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372 189 KADKFERDERLLLQGIndpETTPDlHIRYLFYLAQTYFHLSQFENSIKWYKKRVEAGGWVEEVFYSLLRIgfcYEQL--- 265
Cdd:COG2956   54 RRGEYDRAIRIHQKLL---ERDPD-RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI---YEQEgdw 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372 266 --ANRSANKQNEVTDADEK---ETVKGQEEQ-YLALAVFYFQKAWEYRPTRAEPLYQLARLYRLRSQNNIALMYALQGKE 339
Cdd:COG2956  127 ekAIEVLERLLKLGPENAHaycELAELYLEQgDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE 206

                 .
gi 446448372 340 I 340
Cdd:COG2956  207 Q 207
 
Name Accession Description Interval E-value
Beta4Glucosyltransferase cd02511
UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of ...
14-105 1.26e-17

UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.


Pssm-ID: 133005 [Multi-domain]  Cd Length: 229  Bit Score: 81.18  E-value: 1.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  14 KLCLCMIVKNESRIMERCLNATKSIVDFVSICDTGSTDNTPEIIENwckeneiPG-TVHHEPFKNFGYNRSLAVSLAQKt 92
Cdd:cd02511    1 TLSVVIITKNEERNIERCLESVKWAVDEIIVVDSGSTDRTVEIAKE-------YGaKVYQRWWDGFGAQRNFALELATN- 72
                         90
                 ....*....|...
gi 446448372  93 ypeaDYLLILDAD 105
Cdd:cd02511   73 ----DWVLSLDAD 81
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
14-108 7.61e-11

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 61.26  E-value: 7.61e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  14 KLCLCMIVKNESRIMERCLNATKSIVDFVS---ICDTGSTDNTPEIIENWCKENEIPGTVHHEPFKNFGYNRSLAVSLAQ 90
Cdd:COG0463    3 LVSVVIPTYNEEEYLEEALESLLAQTYPDFeiiVVDDGSTDGTAEILRELAAKDPRIRVIRLERNRGKGAARNAGLAAAR 82
                         90
                 ....*....|....*...
gi 446448372  91 ktypeADYLLILDADMIL 108
Cdd:COG0463   83 -----GDYIAFLDADDQL 95
Glyco_tranf_GTA_type cd00761
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
19-109 8.08e-09

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


Pssm-ID: 132997 [Multi-domain]  Cd Length: 156  Bit Score: 54.43  E-value: 8.08e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  19 MIVKNESRIMERCLNA----TKSIVDFVsICDTGSTDNTPEIIENWCKENEIPGTVHHEPFKNFGYNRSLAVSLAQktyp 94
Cdd:cd00761    3 IPAYNEEPYLERCLESllaqTYPNFEVI-VVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAAR---- 77
                         90
                 ....*....|....*
gi 446448372  95 eADYLLILDADMILE 109
Cdd:cd00761   78 -GEYILFLDADDLLL 91
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
16-105 2.52e-08

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 53.17  E-value: 2.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372   16 CLCMIVKNESRIMERCL----NATKSIVDFVsICDTGSTDNTPEIIENWCKENEIPGTVHHEpfKNFGY--NRSLAVSLA 89
Cdd:pfam00535   1 SVIIPTYNEEKYLLETLesllNQTYPNFEII-VVDDGSTDGTVEIAEEYAKKDPRVRVIRLP--ENRGKagARNAGLRAA 77
                          90
                  ....*....|....*.
gi 446448372   90 QktypeADYLLILDAD 105
Cdd:pfam00535  78 T-----GDYIAFLDAD 88
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
21-127 5.71e-07

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 50.90  E-value: 5.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  21 VKNESRIMERCLNATKSI------VDFVSICDtGSTDNTPEIIENWCKENEIPGTVHHEPFKNFGYNRSLAVSLAQktyp 94
Cdd:COG1215   37 AYNEEAVIEETLRSLLAQdypkekLEVIVVDD-GSTDETAEIARELAAEYPRVRVIERPENGGKAAALNAGLKAAR---- 111
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446448372  95 eADYLLILDADMILE------------------VGPN-------------FDKTSLTEDHYLTL 127
Cdd:COG1215  112 -GDIVVFLDADTVLDpdwlrrlvaafadpgvgaSGANlafrrealeevggFDEDTLGEDLDLSL 174
GT2_Chondriotin_Pol_N cd06420
N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase; Chondroitin ...
23-114 7.65e-07

N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase; Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix.


Pssm-ID: 133042 [Multi-domain]  Cd Length: 182  Bit Score: 49.11  E-value: 7.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  23 NESRIMERCLNATK--SIVDF-VSICDTGSTDNTPEIIENWCKENEIPgtVHHEPFKNFGY----NRSLAVSLAqktypE 95
Cdd:cd06420    7 NRPEALELVLKSVLnqSILPFeVIIADDGSTEETKELIEEFKSQFPIP--IKHVWQEDEGFrkakIRNKAIAAA-----K 79
                         90
                 ....*....|....*....
gi 446448372  96 ADYLLILDADMILEvgPNF 114
Cdd:cd06420   80 GDYLIFIDGDCIPH--PDF 96
DPM_DPG-synthase_like cd04179
DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; DPM1 is the ...
23-106 3.72e-06

DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.


Pssm-ID: 133022 [Multi-domain]  Cd Length: 185  Bit Score: 47.18  E-value: 3.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  23 NES----RIMERCLNATKSIVDF-VSICDTGSTDNTPEIIENWCKENEIPGTVHHEpfKNFGYNRSL--AVSLAQKtype 95
Cdd:cd04179    7 NEEenipELVERLLAVLEEGYDYeIIVVDDGSTDGTAEIARELAARVPRVRVIRLS--RNFGKGAAVraGFKAARG---- 80
                         90
                 ....*....|.
gi 446448372  96 aDYLLILDADM 106
Cdd:cd04179   81 -DIVVTMDADL 90
WcaE COG1216
Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism];
14-114 3.92e-06

Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism];


Pssm-ID: 440829 [Multi-domain]  Cd Length: 202  Bit Score: 47.29  E-value: 3.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  14 KLCLCMIVKNESRIMERCLNA--TKSIVDF-VSICDTGSTDNTPEiienWCKENEIPGTVHHEPFKNFGY--NRSLAVSL 88
Cdd:COG1216    4 KVSVVIPTYNRPELLRRCLESllAQTYPPFeVIVVDNGSTDGTAE----LLAALAFPRVRVIRNPENLGFaaARNLGLRA 79
                         90       100
                 ....*....|....*....|....*.
gi 446448372  89 AqktypEADYLLILDADMILEvgPNF 114
Cdd:COG1216   80 A-----GGDYLLFLDDDTVVE--PDW 98
Succinoglycan_BP_ExoA cd02525
ExoA is involved in the biosynthesis of succinoglycan; Succinoglycan Biosynthesis Protein ExoA ...
19-105 2.84e-05

ExoA is involved in the biosynthesis of succinoglycan; Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.


Pssm-ID: 133016 [Multi-domain]  Cd Length: 249  Bit Score: 45.30  E-value: 2.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  19 MIVKNESRIMERCL----NATKSIVDF-VSICDTGSTDNTPEIIENWCKENEIPgTVHHEPFKNFGYNRSLAVSLAQkty 93
Cdd:cd02525    6 IPVRNEEKYIEELLesllNQSYPKDLIeIIVVDGGSTDGTREIVQEYAAKDPRI-RLIDNPKRIQSAGLNIGIRNSR--- 81
                         90
                 ....*....|..
gi 446448372  94 peADYLLILDAD 105
Cdd:cd02525   82 --GDIIIRVDAH 91
GT_2_like_d cd04196
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
44-105 8.95e-05

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133039 [Multi-domain]  Cd Length: 214  Bit Score: 43.39  E-value: 8.95e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446448372  44 ICDTGSTDNTPEIIENWCKENEIPGTVHHEPfKNFGYNRSLaVSLAQktYPEADYLLILDAD 105
Cdd:cd04196   32 ISDDGSTDGTVEIIKEYIDKDPFIIILIRNG-KNLGVARNF-ESLLQ--AADGDYVFFCDQD 89
CESA_like cd06423
CESA_like is the cellulose synthase superfamily; The cellulose synthase (CESA) superfamily ...
22-109 1.63e-04

CESA_like is the cellulose synthase superfamily; The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.


Pssm-ID: 133045 [Multi-domain]  Cd Length: 180  Bit Score: 42.21  E-value: 1.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372  22 KNESRIMERCLNATKSI----VDFVSICDtGSTDNTPEIIENWCKENEIPGTVHHEP---FK----NFGYNRSlavslaq 90
Cdd:cd06423    6 YNEEAVIERTIESLLALdypkLEVIVVDD-GSTDDTLEILEELAALYIRRVLVVRDKengGKagalNAGLRHA------- 77
                         90
                 ....*....|....*....
gi 446448372  91 ktypEADYLLILDADMILE 109
Cdd:cd06423   78 ----KGDIVVVLDADTILE 92
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
189-340 4.27e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 4.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372 189 KADKFERDERLLLQGIndpETTPDlHIRYLFYLAQTYFHLSQFENSIKWYKKRVEAGGWVEEVFYSLLRIgfcYEQL--- 265
Cdd:COG2956   54 RRGEYDRAIRIHQKLL---ERDPD-RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI---YEQEgdw 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372 266 --ANRSANKQNEVTDADEK---ETVKGQEEQ-YLALAVFYFQKAWEYRPTRAEPLYQLARLYRLRSQNNIALMYALQGKE 339
Cdd:COG2956  127 ekAIEVLERLLKLGPENAHaycELAELYLEQgDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE 206

                 .
gi 446448372 340 I 340
Cdd:COG2956  207 Q 207
Glyco_tranf_2_4 pfam13704
Glycosyl transferase family 2; Members of this family of prokaryotic proteins include putative ...
22-108 9.12e-03

Glycosyl transferase family 2; Members of this family of prokaryotic proteins include putative glucosyltransferases,


Pssm-ID: 433416 [Multi-domain]  Cd Length: 97  Bit Score: 35.30  E-value: 9.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446448372   22 KNESRIMERCLNATKSI-VDFVSICDTGSTDNTPEIIENWcKENEIPGTVHHEPFKNFGYNRSLAVslaQKTYPEADYLL 100
Cdd:pfam13704   1 RNEADILPQWLAHHLALgFDHIYVYDNGSDDGTAEILARL-PDVSILRSDLSYKDARFQVDWRNAL---LARYAEADWVL 76

                  ....*...
gi 446448372  101 ILDADMIL 108
Cdd:pfam13704  77 VVDADEFL 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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