NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446450165|ref|WP_000528020|]
View 

MULTISPECIES: flavin monoamine oxidase family protein [Bacillus]

Protein Classification

flavin monoamine oxidase family protein( domain architecture ID 11440890)

flavin monoamine oxidase family protein functions as an oxidoreductase that catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

CATH:  3.50.50.60|1.10.405.10
EC:  1.-.-.-
Gene Ontology:  GO:0000166|GO:0016491
SCOP:  4000128

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
18-478 1.88e-140

Monoamine oxidase [Amino acid transport and metabolism];


:

Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 410.47  E-value: 1.88e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  18 LAKTNNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREPFSaGLYFNAGPMRIPDTHELTLAYIRKF 97
Cdd:COG1231    1 MSRRARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGRVWTLRFGDD-GLYAELGAMRIPPSHTNLLALAREL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  98 KLPLNLFINKTFADIIYTNHIQTRLNVFENDPSILEypvldkergktaeELMLEVLEPILNYIKkdpnkNWFIVEKKYKT 177
Cdd:COG1231   80 GLPLEPFPNENGNALLYLGGKRVRAGEIAADLRGVA-------------ELLAKLLRALAAALD-----PWAHPAAELDR 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 178 YSLGSFLMEY-YSDGAIDMIGVLLdmEAYMG-----MSLIEVLREMIFFTSTAKYYEITGGMDALPNAFLPQLKDNIFMS 251
Cdd:COG1231  142 ESLAEWLRRNgASPSARRLLGLLG--AGEYGadpdeLSLLDLLRYAASAGGGAQQFRIVGGMDQLPRALAAELGDRIRLG 219

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 252 YKVEKIIQEDNKVMLQvnheqTLDPFTITSDIAIITIPFSALRFVEVQPfhLFTYFKRRAIRELNYIAATKIAIEFKSRF 331
Cdd:COG1231  220 APVTRIRQDGDGVTVT-----TDDGGTVRADAVIVTVPPSVLRRIEFDP--PLPAAKRAAIQRLPYGAAIKVFLQFDRPF 292

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 332 WERVGQYGGKSITDLPIRFTYYPSYGIQSPGAaiVIASYTWADEALTWDSLPHRERIRYALKNLAQIYGnVVYSEFITGE 411
Cdd:COG1231  293 WEEDGLYGGISLTDLPIRQTWYPSNGPDGGAG--VLLGYVGGDDARALAALSPEERVAAALEQLARIFG-VYAAEPVDYV 369

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446450165 412 SFSWSKNTYSCGAFTAFEPGQELELFPYIASPAGNVHFAGEHT-TLTHGWMQGAIESGIRVAHEVNEK 478
Cdd:COG1231  370 STDWGRDPWSRGAYAAAPPGQLTAAGPALAEPDGRIHFAGEHTsDEWPGWVEGALESGERAAAEILAR 437
 
Name Accession Description Interval E-value
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
18-478 1.88e-140

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 410.47  E-value: 1.88e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  18 LAKTNNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREPFSaGLYFNAGPMRIPDTHELTLAYIRKF 97
Cdd:COG1231    1 MSRRARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGRVWTLRFGDD-GLYAELGAMRIPPSHTNLLALAREL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  98 KLPLNLFINKTFADIIYTNHIQTRLNVFENDPSILEypvldkergktaeELMLEVLEPILNYIKkdpnkNWFIVEKKYKT 177
Cdd:COG1231   80 GLPLEPFPNENGNALLYLGGKRVRAGEIAADLRGVA-------------ELLAKLLRALAAALD-----PWAHPAAELDR 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 178 YSLGSFLMEY-YSDGAIDMIGVLLdmEAYMG-----MSLIEVLREMIFFTSTAKYYEITGGMDALPNAFLPQLKDNIFMS 251
Cdd:COG1231  142 ESLAEWLRRNgASPSARRLLGLLG--AGEYGadpdeLSLLDLLRYAASAGGGAQQFRIVGGMDQLPRALAAELGDRIRLG 219

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 252 YKVEKIIQEDNKVMLQvnheqTLDPFTITSDIAIITIPFSALRFVEVQPfhLFTYFKRRAIRELNYIAATKIAIEFKSRF 331
Cdd:COG1231  220 APVTRIRQDGDGVTVT-----TDDGGTVRADAVIVTVPPSVLRRIEFDP--PLPAAKRAAIQRLPYGAAIKVFLQFDRPF 292

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 332 WERVGQYGGKSITDLPIRFTYYPSYGIQSPGAaiVIASYTWADEALTWDSLPHRERIRYALKNLAQIYGnVVYSEFITGE 411
Cdd:COG1231  293 WEEDGLYGGISLTDLPIRQTWYPSNGPDGGAG--VLLGYVGGDDARALAALSPEERVAAALEQLARIFG-VYAAEPVDYV 369

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446450165 412 SFSWSKNTYSCGAFTAFEPGQELELFPYIASPAGNVHFAGEHT-TLTHGWMQGAIESGIRVAHEVNEK 478
Cdd:COG1231  370 STDWGRDPWSRGAYAAAPPGQLTAAGPALAEPDGRIHFAGEHTsDEWPGWVEGALESGERAAAEILAR 437
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 34-476 1.74e-74

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 241.24  E-value: 1.74e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165   34 ISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIRepfSAGLYFNAGPMRIPDTHELTLAYIRKFKLPLNLFINKtFADII 113
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVR---DDGFLIELGAMWFHGAQPPLLALLKELGLEDRLVLPD-PAPFY 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  114 YTNHIQTRLNVFendpsilEYPVLDKERGKTAEEL-MLEVLEPILNYIKKDPNKNWFivEKKYKTYSLGSFLMEY--YSD 190
Cdd:pfam01593  77 TVLFAGGRRYPG-------DFRRVPAGWEGLLEFGrLLSIPEKLRLGLAALASDALD--EFDLDDFSLAESLLFLgrRGP 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  191 GAIDMIGVLLDMEAYMGMSL--------IEVLREMIFFTSTAKYYE-------ITGGMDALPNAFLPQ-LKDNIFMSYKV 254
Cdd:pfam01593 148 GDVEVWDRLIDPELFAALPFasgafagdPSELSAGLALPLLWALLGeggslllPRGGLGALPDALAAQlLGGDVRLNTRV 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  255 EKIIQEDNKVMLqvnheQTLDPFTITSDIAIITIPFSALRFVEVQPfhLFTYFKRRAIRELNYIAATKIAIEFKSRFWER 334
Cdd:pfam01593 228 RSIDREGDGVTV-----TLTDGEVIEADAVIVTVPLGVLKRILFTP--PLPPEKARAIRNLGYGPVNKVHLEFDRKFWPD 300

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  335 VGQYG--GKSITDLPIRFTYYPSYGIQSPGAAIVIASYTW-ADEALTWDSLPHRERIRYALKNLAQIYGNVVySEFITGE 411
Cdd:pfam01593 301 LGLLGllSELLTGLGTAFSWLTFPNRAPPGKGLLLLVYVGpGDRARELEGLSDEELLQAVLRDLRKLFGEEA-PEPLRVL 379

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446450165  412 SFSWSKNTYSCGAFTAFEPGQELELFPYIA-SPAGNVHFAGEHTTLTH-GWMQGAIESGIRVAHEVN 476
Cdd:pfam01593 380 VSDWHTDPWPRGSYSLPQYGPGHDDYRPLArTPDPGLFFAGEHTSTGYpGTVEGAIESGRRAARAVL 446
PLN02268 PLN02268
probable polyamine oxidase
 29-474 5.58e-16

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 79.73  E-value: 5.58e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  29 VAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTirePFSAGLYFNAGPMRIPD-THELTLA-YIRKFKLPLnlfiN 106
Cdd:PLN02268   5 VIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT---DYSFGFPVDMGASWLHGvCNENPLApLIGRLGLPL----Y 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 107 KTFAD--IIYTNHIQTrlnvfendpsileYPVLDKERGKTAEEL---MLEVLEPILNYIKK--DPNKN--------WFIV 171
Cdd:PLN02268  78 RTSGDnsVLYDHDLES-------------YALFDMDGNQVPQELvtkVGETFERILEETEKvrDEHEEdmsllqaiSIVL 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 172 EKK--YKTYSLGSFLMEYYsdgaidmigvLLDMEAYMGMSLievlrEMIFFTSTAKYYEITGGMDALPNAFLPQLKD--- 246
Cdd:PLN02268 145 ERHpeLRLEGLAHEVLQWY----------LCRMEGWFAADA-----DTISLKSWDQEELLEGGHGLMVRGYDPVINTlak 209

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 247 --NIFMSYKVEKIIQEDNKVMLQVNheqtlDPFTITSDIAIITIPFSALR--FVEVQPfhLFTYFKRRAIRELNYIAATK 322
Cdd:PLN02268 210 glDIRLNHRVTKIVRRYNGVKVTVE-----DGTTFVADAAIIAVPLGVLKanIIKFEP--ELPEWKEEAISDLGVGIENK 282

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 323 IAIEFKSRFWERVGQYGGKSITdlpirfTYYPSYGI---QSPGAAIVIasYTWADE-ALTWDSLPHRERIRYALKNLAQI 398
Cdd:PLN02268 283 IALHFDSVFWPNVEFLGVVAPT------SYGCSYFLnlhKATGHPVLV--YMPAGRlARDIEKLSDEAAANFAMSQLKKM 354

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446450165 399 YGNVvySEFITGESFSWSKNTYSCGAFTAFEPGQELELFPYIASPAGNVHFAGEHTTLTH-GWMQGAIESGIRVAHE 474
Cdd:PLN02268 355 LPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFpGSVHGAYSTGVMAAEE 429
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 27-80 2.77e-07

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 52.66  E-value: 2.77e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 446450165   27 ITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREpfsAGLYFNAGP 80
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED---DGFRFDTGP 51
 
Name Accession Description Interval E-value
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
18-478 1.88e-140

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 410.47  E-value: 1.88e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  18 LAKTNNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREPFSaGLYFNAGPMRIPDTHELTLAYIRKF 97
Cdd:COG1231    1 MSRRARGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGRVWTLRFGDD-GLYAELGAMRIPPSHTNLLALAREL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  98 KLPLNLFINKTFADIIYTNHIQTRLNVFENDPSILEypvldkergktaeELMLEVLEPILNYIKkdpnkNWFIVEKKYKT 177
Cdd:COG1231   80 GLPLEPFPNENGNALLYLGGKRVRAGEIAADLRGVA-------------ELLAKLLRALAAALD-----PWAHPAAELDR 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 178 YSLGSFLMEY-YSDGAIDMIGVLLdmEAYMG-----MSLIEVLREMIFFTSTAKYYEITGGMDALPNAFLPQLKDNIFMS 251
Cdd:COG1231  142 ESLAEWLRRNgASPSARRLLGLLG--AGEYGadpdeLSLLDLLRYAASAGGGAQQFRIVGGMDQLPRALAAELGDRIRLG 219

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 252 YKVEKIIQEDNKVMLQvnheqTLDPFTITSDIAIITIPFSALRFVEVQPfhLFTYFKRRAIRELNYIAATKIAIEFKSRF 331
Cdd:COG1231  220 APVTRIRQDGDGVTVT-----TDDGGTVRADAVIVTVPPSVLRRIEFDP--PLPAAKRAAIQRLPYGAAIKVFLQFDRPF 292

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 332 WERVGQYGGKSITDLPIRFTYYPSYGIQSPGAaiVIASYTWADEALTWDSLPHRERIRYALKNLAQIYGnVVYSEFITGE 411
Cdd:COG1231  293 WEEDGLYGGISLTDLPIRQTWYPSNGPDGGAG--VLLGYVGGDDARALAALSPEERVAAALEQLARIFG-VYAAEPVDYV 369

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446450165 412 SFSWSKNTYSCGAFTAFEPGQELELFPYIASPAGNVHFAGEHT-TLTHGWMQGAIESGIRVAHEVNEK 478
Cdd:COG1231  370 STDWGRDPWSRGAYAAAPPGQLTAAGPALAEPDGRIHFAGEHTsDEWPGWVEGALESGERAAAEILAR 437
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 34-476 1.74e-74

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 241.24  E-value: 1.74e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165   34 ISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIRepfSAGLYFNAGPMRIPDTHELTLAYIRKFKLPLNLFINKtFADII 113
Cdd:pfam01593   1 LAGLAAARELLRAGHDVTVLEARDRVGGRIRTVR---DDGFLIELGAMWFHGAQPPLLALLKELGLEDRLVLPD-PAPFY 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  114 YTNHIQTRLNVFendpsilEYPVLDKERGKTAEEL-MLEVLEPILNYIKKDPNKNWFivEKKYKTYSLGSFLMEY--YSD 190
Cdd:pfam01593  77 TVLFAGGRRYPG-------DFRRVPAGWEGLLEFGrLLSIPEKLRLGLAALASDALD--EFDLDDFSLAESLLFLgrRGP 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  191 GAIDMIGVLLDMEAYMGMSL--------IEVLREMIFFTSTAKYYE-------ITGGMDALPNAFLPQ-LKDNIFMSYKV 254
Cdd:pfam01593 148 GDVEVWDRLIDPELFAALPFasgafagdPSELSAGLALPLLWALLGeggslllPRGGLGALPDALAAQlLGGDVRLNTRV 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  255 EKIIQEDNKVMLqvnheQTLDPFTITSDIAIITIPFSALRFVEVQPfhLFTYFKRRAIRELNYIAATKIAIEFKSRFWER 334
Cdd:pfam01593 228 RSIDREGDGVTV-----TLTDGEVIEADAVIVTVPLGVLKRILFTP--PLPPEKARAIRNLGYGPVNKVHLEFDRKFWPD 300

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  335 VGQYG--GKSITDLPIRFTYYPSYGIQSPGAAIVIASYTW-ADEALTWDSLPHRERIRYALKNLAQIYGNVVySEFITGE 411
Cdd:pfam01593 301 LGLLGllSELLTGLGTAFSWLTFPNRAPPGKGLLLLVYVGpGDRARELEGLSDEELLQAVLRDLRKLFGEEA-PEPLRVL 379

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446450165  412 SFSWSKNTYSCGAFTAFEPGQELELFPYIA-SPAGNVHFAGEHTTLTH-GWMQGAIESGIRVAHEVN 476
Cdd:pfam01593 380 VSDWHTDPWPRGSYSLPQYGPGHDDYRPLArTPDPGLFFAGEHTSTGYpGTVEGAIESGRRAARAVL 446
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
 24-294 5.51e-16

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 79.88  E-value: 5.51e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  24 PKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREpfsAGLYFNAGPMRIPDTHELTLAYIRKFKLPlnl 103
Cdd:COG1232    1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLIRTVEV---DGFRIDRGPHSFLTRDPEVLELLRELGLG--- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 104 finktfADIIYTNHIQTRL---NVF----ENDPSILEYPVLDkERGKtaeelmLEVL-EPILNYIKKDPNKN---WF--- 169
Cdd:COG1232   75 ------DELVWPNTRKSYIyygGKLhplpQGPLALLRSPLLS-LAGK------LRALlELLAPRRPPGEDESlaeFVrrr 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 170 ----IVEKKYKTYSLGsflmeYYSdGAIDMIGV------LLDMEAYMGmSLIE-VLREMIFFTSTAKYYEITGGMDALPN 238
Cdd:COG1232  142 fgreVYERLVEPLLEG-----VYA-GDPDELSAdwafprLKRLELEHG-SLIKgALALRKGAKAGEVFGYLRGGLGTLVE 214

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 446450165 239 AFLPQLKD-NIFMSYKVEKIIQEDNKVMLQVNheqtlDPFTITSDIAIITIPFSALR 294
Cdd:COG1232  215 ALAEALEAgEIRLGTRVTAIEREGGGWRVTTS-----DGETIEADAVVSATPAPALA 266
PLN02268 PLN02268
probable polyamine oxidase
 29-474 5.58e-16

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 79.73  E-value: 5.58e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  29 VAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTirePFSAGLYFNAGPMRIPD-THELTLA-YIRKFKLPLnlfiN 106
Cdd:PLN02268   5 VIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT---DYSFGFPVDMGASWLHGvCNENPLApLIGRLGLPL----Y 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 107 KTFAD--IIYTNHIQTrlnvfendpsileYPVLDKERGKTAEEL---MLEVLEPILNYIKK--DPNKN--------WFIV 171
Cdd:PLN02268  78 RTSGDnsVLYDHDLES-------------YALFDMDGNQVPQELvtkVGETFERILEETEKvrDEHEEdmsllqaiSIVL 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 172 EKK--YKTYSLGSFLMEYYsdgaidmigvLLDMEAYMGMSLievlrEMIFFTSTAKYYEITGGMDALPNAFLPQLKD--- 246
Cdd:PLN02268 145 ERHpeLRLEGLAHEVLQWY----------LCRMEGWFAADA-----DTISLKSWDQEELLEGGHGLMVRGYDPVINTlak 209

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 247 --NIFMSYKVEKIIQEDNKVMLQVNheqtlDPFTITSDIAIITIPFSALR--FVEVQPfhLFTYFKRRAIRELNYIAATK 322
Cdd:PLN02268 210 glDIRLNHRVTKIVRRYNGVKVTVE-----DGTTFVADAAIIAVPLGVLKanIIKFEP--ELPEWKEEAISDLGVGIENK 282

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 323 IAIEFKSRFWERVGQYGGKSITdlpirfTYYPSYGI---QSPGAAIVIasYTWADE-ALTWDSLPHRERIRYALKNLAQI 398
Cdd:PLN02268 283 IALHFDSVFWPNVEFLGVVAPT------SYGCSYFLnlhKATGHPVLV--YMPAGRlARDIEKLSDEAAANFAMSQLKKM 354

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446450165 399 YGNVvySEFITGESFSWSKNTYSCGAFTAFEPGQELELFPYIASPAGNVHFAGEHTTLTH-GWMQGAIESGIRVAHE 474
Cdd:PLN02268 355 LPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFpGSVHGAYSTGVMAAEE 429
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
 16-472 3.16e-14

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 75.41  E-value: 3.16e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  16 EGLAKTNnpkqITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREPF-----------SAGLYFNAGPMRIp 84
Cdd:PLN02328 234 EGVEPAN----VVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGdgvvaaadlggSVLTGINGNPLGV- 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  85 dtheltLAyiRKFKLPLN-------LFI-NKTFADIIYTNHIQTRLNVFENDPSILEYPVLdkERGKTAEELMLEVLEPI 156
Cdd:PLN02328 309 ------LA--RQLGLPLHkvrdicpLYLpDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMI--EEVKSVDVNLGTALEAF 378

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 157 --LNYIKKDPNK----NWFIVEKKYKTYSLGSFL-MEYY-SDGAIDMIGvlldmeaymgmslievlrEMIFftstakyye 228
Cdd:PLN02328 379 rhVYKVAEDPQErmllNWHLANLEYANASLMSNLsMAYWdQDDPYEMGG------------------DHCF--------- 431

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 229 ITGGMDAlpnaFLPQLKDN--IFMSYKVEKIIQEDNKVMLQVNHEQtldpftITSDIAIITIPFSALRFVEVQPFHLFTY 306
Cdd:PLN02328 432 IPGGNDT----FVRELAKDlpIFYERTVESIRYGVDGVIVYAGGQE------FHGDMVLCTVPLGVLKKGSIEFYPELPQ 501

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 307 FKRRAIRELNYIAATKIAIEFKSRFWERVGQYGGKSITDLPIRFTYYPSYGIQSPGAAIVIASYTWADEALTWDSLPHRE 386
Cdd:PLN02328 502 RKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVE 581

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 387 RIRYALKNLAQIY--GNVVYSEFITGESFSWSKNTYSCGAFTAFEPGQELELFPYIASPAGN--VHFAGEHTTLTH-GWM 461
Cdd:PLN02328 582 SVKRVLQILRGIFhpKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDgrVFFAGEATNKQYpATM 661

                        490
                 ....*....|.
gi 446450165 462 QGAIESGIRVA 472
Cdd:PLN02328 662 HGAFLSGMREA 672
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
29-80 4.64e-13

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 64.09  E-value: 4.64e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 446450165   29 VAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREPfsaGLYFNAGP 80
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAYSYRVP---GYVFDYGA 49
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 25-264 2.64e-12

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 68.72  E-value: 2.64e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  25 KQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREPfsaGLYFNAGPmripdtHELTLAYI-RKF--KLPL 101
Cdd:COG1233    4 YDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFERP---GFRFDVGP------SVLTMPGVlERLfrELGL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 102 NLFINKTFADIIYTNHiqtrlnvFENDPSIleypVLDKERGKTAEElmLEVLEP-----ILNYIKKdpnknwfiVEKKYK 176
Cdd:COG1233   75 EDYLELVPLDPAYRVP-------FPDGRAL----DLPRDLERTAAE--LERLFPgdaeaYRRFLAE--------LRRLYD 133

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 177 TysLGSFLMEYYSDGAIDMIG--VLLDMEAYMGMSLIEVLREMI-------FFTSTAKYYEIT----------------- 230
Cdd:COG1233  134 A--LLEDLLYRPLLSLRDLLRplALARLLRLLLRSLRDLLRRYFkdprlraLLAGQALYLGLSpdrtpalyaliayleya 211

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 446450165 231 -------GGMDALPNAFLPQLKDN---IFMSYKVEKIIQEDNKV 264
Cdd:COG1233  212 ggvwypkGGMGALADALARLAEELggeIRTGAEVERILVEGGRA 255
PLN03000 PLN03000
amine oxidase
 12-472 9.01e-10

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 61.19  E-value: 9.01e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  12 QIVHEGLAKTNNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIR-EPFSAGLYFNAGPMRIPDTHELT 90
Cdd:PLN03000 172 QAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKmEANRVGAAADLGGSVLTGTLGNP 251

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  91 LAYIRKfKLPLNLFinktfadiiytnHIQTRLNVFENDpsileypvldkerGKTAEELMLEVLEPILNYIKKDPNKNWFI 170
Cdd:PLN03000 252 LGIIAR-QLGSSLY------------KVRDKCPLYRVD-------------GKPVDPDVDLKVEVAFNQLLDKASKLRQL 305

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 171 VEKKYKTYSLGSFLMEYY----SDGAIDMIGV----LLDMEaYMGMSLIEVLRemIFFTSTAKYYEITGGMDALP--NAF 240
Cdd:PLN03000 306 MGDVSMDVSLGAALETFRqvsgNDVATEEMGLfnwhLANLE-YANAGLVSKLS--LAFWDQDDPYDMGGDHCFLPggNGR 382

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 241 LPQ-LKDNIFMSYK--VEKIIQEDNKVMLQVNHEqtldpfTITSDIAIITIPFSALRFVEVQPFHLFTYFKRRAIRELNY 317
Cdd:PLN03000 383 LVQaLAENVPILYEktVQTIRYGSNGVKVIAGNQ------VYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGF 456

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 318 IAATKIAIEFKSRFWER-VGQYGgkSITDLPIR----FTYYpSYGIQSpGAAIVIAsYTWADEALTWDSLPHRERIRYAL 392
Cdd:PLN03000 457 GLLNKVAMLFPYVFWSTdLDTFG--HLTEDPNYrgefFLFY-SYAPVA-GGPLLIA-LVAGEAAHKFETMPPTDAVTRVL 531

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 393 KNLAQIY--GNVVYSEFITGESFSWSKNTYSCGAFTAFEPGQELELFPYIASPAGN--VHFAGEHTTLTH-GWMQGAIES 467
Cdd:PLN03000 532 HILRGIYepQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDgrLFFAGEATTRRYpATMHGAFVT 611


                 ....*
gi 446450165 468 GIRVA 472
Cdd:PLN03000 612 GLREA 616
PLN02676 PLN02676
polyamine oxidase
 18-472 3.02e-09

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 58.96  E-value: 3.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  18 LAKTNNPKQITVaGAGISGLVAGSLLKEAGHE-VTIIEANNRIGGRVYtiREPFS-------AGLYFNAGPMRIPDTHEL 89
Cdd:PLN02676  21 MDAKPSPSVIIV-GAGMSGISAAKTLSEAGIEdILILEATDRIGGRMR--KANFAgvsvelgANWVEGVGGPESNPIWEL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  90 tlayIRKFKLplnlfinKTFadiiYTNHIQTRLNVFENDPSILEYPVLDKERGKTAEELMLEVLEPILNYIKKDPNKNWF 169
Cdd:PLN02676  98 ----ANKLKL-------RTF----YSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVDISIL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 170 IVEKKYKTYSLGSFLMeyysdgAIDMIGVLLDM-EAYMGMSLIEV--------LREMIFFTSTAKYYEitggmdalpnAF 240
Cdd:PLN02676 163 TAQRLFGQVPKTPLEM------VIDYYNYDYEFaEPPRVTSLKNTepnptfvdFGEDEYFVADPRGYE----------SL 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 241 LPQLKDNiFMSYKVEKIIQED---NKVMLQVNHE------QTLDPFTITSDIAIITIPFSALR--FVEVQPfhLFTYFKR 309
Cdd:PLN02676 227 VYYLAEQ-FLSTKSGKITDPRlklNKVVREISYSkngvtvKTEDGSVYRAKYVIVSVSLGVLQsdLIKFKP--PLPDWKI 303

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 310 RAIRELNYIAATKIAIEFKSRFW-------------ERVGqyggksitdlpirftYYPSY---GIQSPGAAIVIASYTwA 373
Cdd:PLN02676 304 EAIYQFDMAVYTKIFLKFPYKFWpsgpgtefflyahERRG---------------YYPFWqhlENEYPGSNVLFVTVT-D 367

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 374 DEALTWDSLPHRERIRYALKNLAQIYG-NVVYSEFITGEsfSWSKNTYSCGAFTAFEPGQELELFPYIASPAGNVHFAGE 452
Cdd:PLN02676 368 EESRRIEQQPDSETKAEIMEVLRKMFGpNIPEATDILVP--RWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGE 445

                        490       500
                 ....*....|....*....|.
gi 446450165 453 HTTLTH-GWMQGAIESGIRVA 472
Cdd:PLN02676 446 HTSEKYnGYVHGAYLAGIDTA 466
PLN02976 PLN02976
amine oxidase
 25-71 1.62e-08

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 57.18  E-value: 1.62e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 446450165   25 KQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREPFS 71
Cdd:PLN02976  694 KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLS 740
Ppro0129 COG2907
Predicted flavin-containing amine oxidase [General function prediction only];
24-66 9.40e-08

Predicted flavin-containing amine oxidase [General function prediction only];


Pssm-ID: 442151 [Multi-domain]  Cd Length: 423  Bit Score: 53.97  E-value: 9.40e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446450165  24 PKQITVAGAGISGLVAGSLLKEAgHEVTIIEANNRIGGRVYTI 66
Cdd:COG2907    3 RMRIAVIGSGISGLTAAWLLSRR-HDVTLFEANDRLGGHTHTV 44
PLN02529 PLN02529
lysine-specific histone demethylase 1
 23-475 1.27e-07

lysine-specific histone demethylase 1


Pssm-ID: 178144 [Multi-domain]  Cd Length: 738  Bit Score: 54.13  E-value: 1.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  23 NPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTI----REPFSAglyFNAGPMRIPDTHELTLAYI-RKF 97
Cdd:PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQkmgrKGQFAA---VDLGGSVITGIHANPLGVLaRQL 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  98 KLPLNlfinktfadiiytnhiQTRLNVFENDPsilEYPVLDKERGKTAEELMLEVLEPILNYIKkdpnknwfIVEKKYKT 177
Cdd:PLN02529 236 SIPLH----------------KVRDNCPLYKP---DGALVDKEIDSNIEFIFNKLLDKVTELRQ--------IMGGFAND 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 178 YSLGSFLM---EYYSDGAIDMIGVLLDMEaymgMSLIEVLREMIFFTSTAKYYE-------------ITGGMDALPNAFL 241
Cdd:PLN02529 289 ISLGSVLErlrQLYGVARSTEERQLLDWH----LANLEYANAGCLSDLSAAYWDqddpyemggdhcfLAGGNWRLINALC 364

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 242 PQLKdnIFMSYKVEKIIQEDNKVMLqVNHEQTLDpftitSDIAIITIPFSAL--RFVEVQPFHLFTyfKRRAIRELNYIA 319
Cdd:PLN02529 365 EGVP--IFYGKTVDTIKYGNDGVEV-IAGSQVFQ-----ADMVLCTVPLGVLkkRTIRFEPELPRR--KLAAIDRLGFGL 434

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 320 ATKIAIEFKSRFW-ERVGQYG--GKSITDLPIRFTYYpSYGIQSPGAAIVIASYTWADEALTW---DSLPHReriryALK 393
Cdd:PLN02529 435 LNKVAMVFPSVFWgEELDTFGclNESSNKRGEFFLFY-GYHTVSGGPALVALVAGEAAQRFENtdpSTLLHR-----VLS 508

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 394 NLAQIYG--NVVYSEFITGESFSWSKNTYSCGAFTAFEPGQELELFPYIA-SPAGNVHFAGEHTTLTH-GWMQGAIESGI 469
Cdd:PLN02529 509 VLRGIYNpkGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAeSVSGRLFFAGEATTRQYpATMHGAFLSGL 588


                 ....*.
gi 446450165 470 RVAHEV 475
Cdd:PLN02529 589 REASRI 594
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
 24-69 2.41e-07

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 52.93  E-value: 2.41e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 446450165  24 PKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREP 69
Cdd:COG3349    3 PPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGRARSFPDP 48
crtI_fam TIGR02734
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ...
 27-80 2.77e-07

phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274273 [Multi-domain]  Cd Length: 495  Bit Score: 52.66  E-value: 2.77e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 446450165   27 ITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREpfsAGLYFNAGP 80
Cdd:TIGR02734   1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED---DGFRFDTGP 51
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
24-79 3.42e-07

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 52.19  E-value: 3.42e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446450165  24 PKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIRepfSAGLYFNAG 79
Cdd:COG3380    3 MPDIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGGRMATRR---LDGGRFDHG 55
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
 25-92 5.20e-07

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 51.77  E-value: 5.20e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446450165  25 KQITVAGAGISGLVAGSLLKEAG--HEVTIIEANNRIGGRVYTIRepfSAGLYFNAGP----MRIPDT----HELTLA 92
Cdd:PRK11883   1 KKVAIIGGGITGLSAAYRLHKKGpdADITLLEASDRLGGKIQTVR---KDGFPIELGPesflARKPSApalvKELGLE 75
PRK07233 PRK07233
hypothetical protein; Provisional
 27-61 4.29e-06

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 49.11  E-value: 4.29e-06
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 446450165  27 ITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:PRK07233   2 IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 26-66 5.98e-06

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 48.01  E-value: 5.98e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446450165  26 QITVAGAGISGLVAGSLLKEAGHEVTIIEANNRI--GGRVYTI 66
Cdd:COG0654    5 DVLIVGGGPAGLALALALARAGIRVTVVERAPPPrpDGRGIAL 47
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
 25-80 1.08e-05

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 47.91  E-value: 1.08e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165   25 KQITVAGAGISGLVAGSLLK----EAGHEVTIIEANNRIGGRVYTIREpfsAGLYFNAGP 80
Cdd:TIGR00562   3 KHVVIIGGGISGLCAAYYLEkeipELPVELTLVEASDRVGGKIQTVKE---DGYLIERGP 59
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
 21-61 1.11e-05

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 47.55  E-value: 1.11e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446450165  21 TNNPKQITVA--GAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:COG2072    1 TAATEHVDVVviGAGQAGLAAAYHLRRAGIDFVVLEKADDVGG 43
PRK06753 PRK06753
hypothetical protein; Provisional
 27-59 4.27e-05

hypothetical protein; Provisional


Pssm-ID: 168661 [Multi-domain]  Cd Length: 373  Bit Score: 45.45  E-value: 4.27e-05
                         10        20        30
                 ....*....|....*....|....*....|...
gi 446450165  27 ITVAGAGISGLVAGSLLKEAGHEVTIIEANNRI 59
Cdd:PRK06753   3 IAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35
COG3573 COG3573
Predicted oxidoreductase [General function prediction only];
29-92 1.03e-04

Predicted oxidoreductase [General function prediction only];


Pssm-ID: 442794 [Multi-domain]  Cd Length: 551  Bit Score: 44.78  E-value: 1.03e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  29 VAGAGISGLVAGSLLKEAGHEVTIIEANN--RIGGRVYtirEPFsAGLYFNAGP----MRIPDTHELTLA 92
Cdd:COG3573   10 VVGAGLAGLVAAAELADAGRRVLLLDQEPeaNLGGQAF---WSF-GGLFLVDSPeqrrLGIKDSPELALQ 75
PLN02576 PLN02576
protoporphyrinogen oxidase
 14-68 1.64e-04

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 43.85  E-value: 1.64e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446450165  14 VHEGLAKTNNPKQITVAGAGISGLVAGSLLKEA-GHEVTIIEANNRIGGRVYTIRE 68
Cdd:PLN02576   2 AIAEGSAAASSKDVAVVGAGVSGLAAAYALASKhGVNVLVTEARDRVGGNITSVSE 57
PLN02568 PLN02568
polyamine oxidase
 26-472 2.23e-04

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 43.66  E-value: 2.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  26 QITVAGAGISGLVAGSLLKEAGH-----EVTIIEANNRIGGRVYTIR---EPFSAGLYFNAGPMRIP------DTHelTL 91
Cdd:PLN02568   7 RIVIIGAGMAGLTAANKLYTSSAandmfELTVVEGGDRIGGRINTSEfggERIEMGATWIHGIGGSPvykiaqEAG--SL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  92 AYIRKFKLpLNLFIN--KTFADiiytnhiqtrlNVFENDPSILEyPVLDKERGktaeeLMLEVLEPILNYIKKDPNKNWF 169
Cdd:PLN02568  85 ESDEPWEC-MDGFPDrpKTVAE-----------GGFEVDPSIVE-SISTLFRG-----LMDDAQGKLIEPSEVDEVDFVK 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 170 IVEKKYKTY------SLGSFL---MEYYSDGAIDMIGVlldmEAYMGMSLiEVLREMIF--------------------F 220
Cdd:PLN02568 147 LAAKAARVCesggggSVGSFLrrgLDAYWDSVSADEQI----KGYGGWSR-KLLEEAIFtmhentqrtytsaddlstldL 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 221 TSTAKYYE-------ITGG----MDALPNAfLPQlkDNIFMSYKVEKIIQEDNKVMLQVNheqtlDPFTITSDIAIITIP 289
Cdd:PLN02568 222 AAESEYRMfpgeeitIAKGylsvIEALASV-LPP--GTIQLGRKVTRIEWQDEPVKLHFA-----DGSTMTADHVIVTVS 293

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 290 FSALRFVEVQPFHLFT----YFKRRAIRELNYIAATKIAIEFKSRFWERVGQYGG---------KSITDLP-------IR 349
Cdd:PLN02568 294 LGVLKAGIGEDSGLFSpplpDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKfpflqmafhRSDSEARhdkipwwMR 373

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 350 FTY--YPSYGIQSpgaaiVIASYTWADEALTWDSLPHRERIRYALKNLA------QIYGNVVYSEFITGESFS------- 414
Cdd:PLN02568 374 RTAsiCPIHKNSS-----VLLSWFAGKEALELEKLSDEEIIRGVQTTLSsflkrrVAGLGSQSHPLCNGGASSndgsrwk 448

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165 415 --------WSKN-----TYSCGAF--------TAFEPGQELELFPYIASPAGNVHFAGEHTTLTH-GWMQGAIESGIRVA 472
Cdd:PLN02568 449 fvkvlkskWGTDplflgSYSYVAVgssgddldRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHySTTHGAYFSGLREA 528
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 23-61 2.74e-04

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 43.24  E-value: 2.74e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 446450165  23 NPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
25-70 3.16e-04

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 43.31  E-value: 3.16e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 446450165  25 KQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRVYTIREPF 70
Cdd:COG1148  141 KRALVIGGGIAGMTAALELAEQGYEVYLVEKEPELGGRAAQLHKTF 186
PRK12834 PRK12834
putative FAD-binding dehydrogenase; Reviewed
 29-91 4.39e-04

putative FAD-binding dehydrogenase; Reviewed


Pssm-ID: 183782 [Multi-domain]  Cd Length: 549  Bit Score: 42.58  E-value: 4.39e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  29 VAGAGISGLVAGSLLKEAGHEVTIIEANNR--IGGRVYtirepFS-AGLYFNAGP----MRIPDTHELTL 91
Cdd:PRK12834   9 VVGAGLAGLVAAAELADAGKRVLLLDQENEanLGGQAF-----WSlGGLFLVDSPeqrrLGIKDSLELAL 73
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 16-59 4.94e-04

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 41.92  E-value: 4.94e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 446450165   16 EGLAKTNNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRI 59
Cdd:pfam07992 144 EALRLKLLPKRVVVVGGGYIGVELAAALAKLGKEVTLIEALDRL 187
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 25-61 6.75e-04

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 42.02  E-value: 6.75e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 446450165  25 KQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 25-61 8.94e-04

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 41.78  E-value: 8.94e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 446450165  25 KQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 25-61 1.12e-03

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 41.27  E-value: 1.12e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 446450165  25 KQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:COG0493  122 KKVAVVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
PLN02612 PLN02612
phytoene desaturase
 24-63 1.25e-03

phytoene desaturase


Pssm-ID: 215330 [Multi-domain]  Cd Length: 567  Bit Score: 41.37  E-value: 1.25e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 446450165  24 PKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRV 63
Cdd:PLN02612  93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132
PRK07208 PRK07208
hypothetical protein; Provisional
 22-61 1.29e-03

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 41.03  E-value: 1.29e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 446450165  22 NNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:PRK07208   2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41
PLN02487 PLN02487
zeta-carotene desaturase
 20-63 1.31e-03

zeta-carotene desaturase


Pssm-ID: 215268 [Multi-domain]  Cd Length: 569  Bit Score: 41.32  E-value: 1.31e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 446450165  20 KTNNPK-QITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRV 63
Cdd:PLN02487  70 AYKGPKlKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 27-59 1.82e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 37.18  E-value: 1.82e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 446450165   27 ITVAGAGISGLVAGSLLKEAGHEVTIIEANNRI 59
Cdd:pfam00070   2 VVVVGGGYIGLELAGALARLGSKVTVVERRDRL 34
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 25-61 1.82e-03

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 40.53  E-value: 1.82e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 446450165  25 KQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 20-63 2.38e-03

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 39.79  E-value: 2.38e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 446450165  20 KTNNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGGRV 63
Cdd:COG0446  120 KEFKGKRAVVIGGGPIGLELAEALRKRGLKVTLVERAPRLLGVL 163
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
 22-68 3.36e-03

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 40.11  E-value: 3.36e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446450165  22 NNPKQITVAGAGISGL-VAGSLLKEaGHEVTIIEANNRIGG-RVYTIRE 68
Cdd:PRK12778 429 KNGKKVAVIGSGPAGLsFAGDLAKR-GYDVTVFEALHEIGGvLKYGIPE 476
PRK13984 PRK13984
putative oxidoreductase; Provisional
 5-61 4.22e-03

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 39.75  E-value: 4.22e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 446450165   5 LSMEQMLQIVHEGLAKTNnpKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG 61
Cdd:PRK13984 266 VPVEKYSEILDDEPEKKN--KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320
PRK12831 PRK12831
putative oxidoreductase; Provisional
 19-109 4.36e-03

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 39.62  E-value: 4.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450165  19 AKTNNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEANNRIGG-RVYTIREpfsaglyfnagpMRIP--DTHELTLAYIR 95
Cdd:PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGvLVYGIPE------------FRLPkeTVVKKEIENIK 202

                         90
                 ....*....|....*.
gi 446450165  96 KF--KLPLNLFINKTF 109
Cdd:PRK12831 203 KLgvKIETNVVVGKTV 218
PRK06327 PRK06327
dihydrolipoamide dehydrogenase; Validated
 18-55 4.90e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235779 [Multi-domain]  Cd Length: 475  Bit Score: 39.14  E-value: 4.90e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 446450165  18 LAKTNNPKQITVAGAGISGLVAGSLLKEAGHEVTIIEA 55
Cdd:PRK06327 177 LNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEA 214
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
32-63 6.62e-03

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 38.41  E-value: 6.62e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 446450165  32 AGISGLVAGSLLKEAGHEVTIIEANNRIGGRV 63
Cdd:COG0644    1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDKI 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH