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Conserved domains on  [gi|446450661|ref|WP_000528516|]
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transcriptional regulator [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF722 super family cl23883
Protein of unknown function (DUF722); This family contains several bacteriophage proteins of ...
 8-143 9.57e-12

Protein of unknown function (DUF722); This family contains several bacteriophage proteins of unknown function.


The actual alignment was detected with superfamily member TIGR01636:

Pssm-ID: 451594  Cd Length: 134  Bit Score: 58.38  E-value: 9.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450661    8 IKPGTFKYIESEIYNLNESKKEIKRLRLEILNPTKEQDSNIvyGPLQKGEPVRTTELMATRLLTNKMLRNLEEMVEAVES 87
Cdd:TIGR01636   1 LRTSTFNYIEDELADYYKTEKYLRQREEELRHPYQEADLNA--GGRGQGLHSVVTERMVITIAMDRRLWNLERNRDAIEN 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446450661   88 EYLKLPEDHKKVIRLKYWNKeKKLKMEQIGHECHMHRNTVTTIRKNFVKAVAYHAG 143
Cdd:TIGR01636  79 CLNEADEQTRVIIQELYMKK-RPLTLVGLAQQLFISKSTAYRLRNHIIEAVAEELG 133
 
Name Accession Description Interval E-value
phage_rinA TIGR01636
phage transcriptional activator, RinA family; This model represents a family of phage proteins, ...
 8-143 9.57e-12

phage transcriptional activator, RinA family; This model represents a family of phage proteins, including RinA, a transcriptional activator in staphylococcal phage phi 11. This family shows similarity to ArpU, a phage-related putative autolysin regulator, and to some sporulation-specific sigma factors. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 130697  Cd Length: 134  Bit Score: 58.38  E-value: 9.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450661    8 IKPGTFKYIESEIYNLNESKKEIKRLRLEILNPTKEQDSNIvyGPLQKGEPVRTTELMATRLLTNKMLRNLEEMVEAVES 87
Cdd:TIGR01636   1 LRTSTFNYIEDELADYYKTEKYLRQREEELRHPYQEADLNA--GGRGQGLHSVVTERMVITIAMDRRLWNLERNRDAIEN 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446450661   88 EYLKLPEDHKKVIRLKYWNKeKKLKMEQIGHECHMHRNTVTTIRKNFVKAVAYHAG 143
Cdd:TIGR01636  79 CLNEADEQTRVIIQELYMKK-RPLTLVGLAQQLFISKSTAYRLRNHIIEAVAEELG 133
 
Name Accession Description Interval E-value
phage_rinA TIGR01636
phage transcriptional activator, RinA family; This model represents a family of phage proteins, ...
 8-143 9.57e-12

phage transcriptional activator, RinA family; This model represents a family of phage proteins, including RinA, a transcriptional activator in staphylococcal phage phi 11. This family shows similarity to ArpU, a phage-related putative autolysin regulator, and to some sporulation-specific sigma factors. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 130697  Cd Length: 134  Bit Score: 58.38  E-value: 9.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446450661    8 IKPGTFKYIESEIYNLNESKKEIKRLRLEILNPTKEQDSNIvyGPLQKGEPVRTTELMATRLLTNKMLRNLEEMVEAVES 87
Cdd:TIGR01636   1 LRTSTFNYIEDELADYYKTEKYLRQREEELRHPYQEADLNA--GGRGQGLHSVVTERMVITIAMDRRLWNLERNRDAIEN 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446450661   88 EYLKLPEDHKKVIRLKYWNKeKKLKMEQIGHECHMHRNTVTTIRKNFVKAVAYHAG 143
Cdd:TIGR01636  79 CLNEADEQTRVIIQELYMKK-RPLTLVGLAQQLFISKSTAYRLRNHIIEAVAEELG 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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