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Conserved domains on  [gi|446451820|ref|WP_000529675|]
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MULTISPECIES: TIGR04197 family type VII secretion effector [Bacillus]

Protein Classification

TIGR04197 family type VII secretion effector( domain architecture ID 10024532)

TIGR04197 family type VII secretion effector

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T7SS_SACOL2603 TIGR04197
type VII secretion effector, SACOL2603 family; Members of this protein family are similar in ...
 4-90 8.15e-16

type VII secretion effector, SACOL2603 family; Members of this protein family are similar in length and sequence (although remotely) to the WXG100 family of type VII secretion system (T7SS) targets, described by family TIGR03930. Phylogenetic profiling shows that members of this family are similarly restricted to species with T7SS, marking this family as a related set of T7SS effectors. Members include SACOL2603 from Staphylococcus aureus subsp. aureus COL. Oddly, members of family pfam10824 (DUF2580), which appears also to be related, seem not to be tied to T7SS.


:

Pssm-ID: 275045  Cd Length: 85  Bit Score: 65.75  E-value: 8.15e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446451820   4 FQSNLQTATQIATQMRKASDTIQSASnrSITKATGTTLTINSKAQEANQQALDLTQQFWTAFQREVDNIHSVAKEFERMD 83
Cdd:TIGR04197  1 IKSNLETAQQHATAIKSASSALSGVG--SVTKDDQTTLTGNTNAHEAIDQLQTLVSQIQSALEQDATNIHSVANEFEAVD 78


                 ....*..
gi 446451820  84 HELHNTF 90
Cdd:TIGR04197 79 QEIAQQI 85
 
Name Accession Description Interval E-value
T7SS_SACOL2603 TIGR04197
type VII secretion effector, SACOL2603 family; Members of this protein family are similar in ...
 4-90 8.15e-16

type VII secretion effector, SACOL2603 family; Members of this protein family are similar in length and sequence (although remotely) to the WXG100 family of type VII secretion system (T7SS) targets, described by family TIGR03930. Phylogenetic profiling shows that members of this family are similarly restricted to species with T7SS, marking this family as a related set of T7SS effectors. Members include SACOL2603 from Staphylococcus aureus subsp. aureus COL. Oddly, members of family pfam10824 (DUF2580), which appears also to be related, seem not to be tied to T7SS.


Pssm-ID: 275045  Cd Length: 85  Bit Score: 65.75  E-value: 8.15e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446451820   4 FQSNLQTATQIATQMRKASDTIQSASnrSITKATGTTLTINSKAQEANQQALDLTQQFWTAFQREVDNIHSVAKEFERMD 83
Cdd:TIGR04197  1 IKSNLETAQQHATAIKSASSALSGVG--SVTKDDQTTLTGNTNAHEAIDQLQTLVSQIQSALEQDATNIHSVANEFEAVD 78


                 ....*..
gi 446451820  84 HELHNTF 90
Cdd:TIGR04197 79 QEIAQQI 85
 
Name Accession Description Interval E-value
T7SS_SACOL2603 TIGR04197
type VII secretion effector, SACOL2603 family; Members of this protein family are similar in ...
 4-90 8.15e-16

type VII secretion effector, SACOL2603 family; Members of this protein family are similar in length and sequence (although remotely) to the WXG100 family of type VII secretion system (T7SS) targets, described by family TIGR03930. Phylogenetic profiling shows that members of this family are similarly restricted to species with T7SS, marking this family as a related set of T7SS effectors. Members include SACOL2603 from Staphylococcus aureus subsp. aureus COL. Oddly, members of family pfam10824 (DUF2580), which appears also to be related, seem not to be tied to T7SS.


Pssm-ID: 275045  Cd Length: 85  Bit Score: 65.75  E-value: 8.15e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446451820   4 FQSNLQTATQIATQMRKASDTIQSASnrSITKATGTTLTINSKAQEANQQALDLTQQFWTAFQREVDNIHSVAKEFERMD 83
Cdd:TIGR04197  1 IKSNLETAQQHATAIKSASSALSGVG--SVTKDDQTTLTGNTNAHEAIDQLQTLVSQIQSALEQDATNIHSVANEFEAVD 78


                 ....*..
gi 446451820  84 HELHNTF 90
Cdd:TIGR04197 79 QEIAQQI 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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