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Conserved domains on  [gi|446460877|ref|WP_000538731|]
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MULTISPECIES: tetratricopeptide repeat protein [Escherichia]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 18765941)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YfaP COG4676
Uncharacterized conserved protein YfaP, DUF2135 family [Function unknown];
97-212 4.90e-26

Uncharacterized conserved protein YfaP, DUF2135 family [Function unknown];


:

Pssm-ID: 443712  Cd Length: 125  Bit Score: 101.21  E-value: 4.90e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  97 GMRVVLSWGEKPFDLDSHLIFPGG-HIYFDSKEGTD-ANLDVDDTDSYGSETVTISKKHFGEsYIYAVQDYSNKGlpnsn 174
Cdd:COG4676    7 DLRVVLTWDTDPADLDLHVVEPDGeHVYYGNKLTPNgGRLDVDDTDGYGPEEFTIRKAPPGT-YLVNVNYYGNGG----- 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 446460877 175 yLSASKAKVFVYV----GSSLVRSYSVPAGKRGNIWTVFKLN 212
Cdd:COG4676   81 -QAPTTAKVTVYTnygtPDEKRETVVVPLNKKGELWTVGSFT 121
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
261-366 8.01e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 78.90  E-value: 8.01e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 261 DTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRAN 340
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------DAE 77

                         90       100
                 ....*....|....*....|....*.
gi 446460877 341 SYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKAL 103
 
Name Accession Description Interval E-value
YfaP COG4676
Uncharacterized conserved protein YfaP, DUF2135 family [Function unknown];
97-212 4.90e-26

Uncharacterized conserved protein YfaP, DUF2135 family [Function unknown];


Pssm-ID: 443712  Cd Length: 125  Bit Score: 101.21  E-value: 4.90e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  97 GMRVVLSWGEKPFDLDSHLIFPGG-HIYFDSKEGTD-ANLDVDDTDSYGSETVTISKKHFGEsYIYAVQDYSNKGlpnsn 174
Cdd:COG4676    7 DLRVVLTWDTDPADLDLHVVEPDGeHVYYGNKLTPNgGRLDVDDTDGYGPEEFTIRKAPPGT-YLVNVNYYGNGG----- 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 446460877 175 yLSASKAKVFVYV----GSSLVRSYSVPAGKRGNIWTVFKLN 212
Cdd:COG4676   81 -QAPTTAKVTVYTnygtPDEKRETVVVPLNKKGELWTVGSFT 121
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
261-366 8.01e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 78.90  E-value: 8.01e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 261 DTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRAN 340
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------DAE 77

                         90       100
                 ....*....|....*....|....*.
gi 446460877 341 SYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKAL 103
TPR_11 pfam13414
TPR repeat;
272-313 1.13e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.47  E-value: 1.13e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 446460877  272 GEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNG 313
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 264-365 2.60e-06

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 48.34  E-value: 2.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 264 LARKYNREGEAvyktgqLEQAIQLFQQATELDgNYGQAFSNLGLAYQKNgNIAEAIWANRKAISLASGANAATMRANSYY 343
Cdd:cd15832   44 LAKNWEEAGDA------FLKAAECQLKLDSKH-DAANAYVEAAKCYKKV-DPQEAVNCLEKAIEIYTEMGRFRQAAKHLK 115

                         90       100
                 ....*....|....*....|...
gi 446460877 344 NIAKIYETAGQDAD-ALQYYQLA 365
Cdd:cd15832  116 EIAELYENELGDLDkAIEAYEQA 138
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 306-366 6.69e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.04  E-value: 6.69e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446460877 306 GLAYQKNGNIAEAIWANRKAISLASGANAatmRANSYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:PRK02603  42 GMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQAL 99
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 249-342 3.66e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 3.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  249 STPASPAM-QNSGDTQLarkYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAIS 327
Cdd:TIGR02917 349 IATLSPALgLDPDDPAA---LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425

                          90
                  ....*....|....*.
gi 446460877  328 LAS-GANAATMRANSY 342
Cdd:TIGR02917 426 LDPeLGRADLLLILSY 441
 
Name Accession Description Interval E-value
YfaP COG4676
Uncharacterized conserved protein YfaP, DUF2135 family [Function unknown];
97-212 4.90e-26

Uncharacterized conserved protein YfaP, DUF2135 family [Function unknown];


Pssm-ID: 443712  Cd Length: 125  Bit Score: 101.21  E-value: 4.90e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  97 GMRVVLSWGEKPFDLDSHLIFPGG-HIYFDSKEGTD-ANLDVDDTDSYGSETVTISKKHFGEsYIYAVQDYSNKGlpnsn 174
Cdd:COG4676    7 DLRVVLTWDTDPADLDLHVVEPDGeHVYYGNKLTPNgGRLDVDDTDGYGPEEFTIRKAPPGT-YLVNVNYYGNGG----- 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 446460877 175 yLSASKAKVFVYV----GSSLVRSYSVPAGKRGNIWTVFKLN 212
Cdd:COG4676   81 -QAPTTAKVTVYTnygtPDEKRETVVVPLNKKGELWTVGSFT 121
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
261-366 8.01e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 78.90  E-value: 8.01e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 261 DTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRAN 340
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------DAE 77

                         90       100
                 ....*....|....*....|....*.
gi 446460877 341 SYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKAL 103
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
268-366 2.08e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.04  E-value: 2.08e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 268 YNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRANSYYNIAK 347
Cdd:COG0457   45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGL 118

                         90
                 ....*....|....*....
gi 446460877 348 IYETAGQDADALQYYQLAL 366
Cdd:COG0457  119 ALLELGRYDEAIEAYERAL 137
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 263-366 6.81e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.19  E-value: 6.81e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 263 QLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRANSY 342
Cdd:COG3914   76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD------FAEAY 149

                         90       100
                 ....*....|....*....|....
gi 446460877 343 YNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG3914  150 LNLGEALRRLGRLEEAIAALRRAL 173
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
276-366 7.01e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 69.43  E-value: 7.01e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 276 YKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIwANRKAISLASGanaatmRANSYYNIAKIYETAGQD 355
Cdd:COG3063    3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPN------NAEALLNLAELLLELGDY 75

                         90
                 ....*....|.
gi 446460877 356 ADALQYYQLAL 366
Cdd:COG3063   76 DEALAYLERAL 86
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 255-371 7.43e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.53  E-value: 7.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 255 AMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGAna 334
Cdd:COG5010   44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN-- 121

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446460877 335 atmrANSYYNIAKIYETAGQDADALQYYQLALHDAIL 371
Cdd:COG5010  122 ----PNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 268-366 2.39e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.26  E-value: 2.39e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 268 YNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmransYYNIAK 347
Cdd:COG3914  115 LFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA------LNNLGN 188

                         90
                 ....*....|....*....
gi 446460877 348 IYETAGQDADALQYYQLAL 366
Cdd:COG3914  189 ALQDLGRLEEAIAAYRRAL 207
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
261-371 2.92e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.58  E-value: 2.92e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 261 DTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGAnaatmrAN 340
Cdd:COG0457   72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD------AD 145

                         90       100       110
                 ....*....|....*....|....*....|.
gi 446460877 341 SYYNIAKIYETAGQDADALQYYQLALHDAIL 371
Cdd:COG0457  146 ALYNLGIALEKLGRYEEALELLEKLEAAALA 176
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 268-367 3.75e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 69.07  E-value: 3.75e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 268 YNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRANSYYNIAK 347
Cdd:COG4783   41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLAR 114

                         90       100
                 ....*....|....*....|
gi 446460877 348 IYETAGQDADALQYYQLALH 367
Cdd:COG4783  115 AYRALGRPDEAIAALEKALE 134
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 262-366 2.30e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 2.30e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 262 TQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmrans 341
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA------ 74

                         90       100
                 ....*....|....*....|....*
gi 446460877 342 YYNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG4783   75 RLNLGLALLKAGDYDEALALLEKAL 99
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 272-366 1.88e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 61.18  E-value: 1.88e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 272 GEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGAnaatmrANSYYNIAKIYET 351
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN------PEALYLLGLAAFQ 97

                         90
                 ....*....|....*
gi 446460877 352 AGQDADALQYYQLAL 366
Cdd:COG4235   98 QGDYAEAIAAWQKLL 112
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 263-366 2.63e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 2.63e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 263 QLARKYnregeavYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRANSY 342
Cdd:COG2956   81 ELAQDY-------LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAY 147

                         90       100
                 ....*....|....*....|....
gi 446460877 343 YNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG2956  148 CELAELYLEQGDYDEAIEALEKAL 171
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 264-368 4.26e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 4.26e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 264 LARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASG-ANAATMRANSY 342
Cdd:COG3914  145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDnADAHSNLLFAL 224

                         90       100
                 ....*....|....*....|....*.
gi 446460877 343 YNIAKIyetagQDADALQYYQLALHD 368
Cdd:COG3914  225 RQACDW-----EVYDRFEELLAALAR 245
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
263-369 1.47e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 60.70  E-value: 1.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 263 QLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmransY 342
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA------Y 144

                         90       100
                 ....*....|....*....|....*..
gi 446460877 343 YNIAKIYETAGQDADALQYYQLALHDA 369
Cdd:COG4785  145 LNRGIALYYLGRYELAIADLEKALELD 171
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 263-366 1.72e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.90  E-value: 1.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 263 QLARKYNREGEavyktgqLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGAnaatmrANSY 342
Cdd:COG2956  115 LLAEIYEQEGD-------WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------ARAL 181

                         90       100
                 ....*....|....*....|....
gi 446460877 343 YNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG2956  182 LLLAELYLEQGDYEEAIAALERAL 205
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 271-366 2.71e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 2.71e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 271 EGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRANSYYNIAKIYE 350
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYL 87

                         90
                 ....*....|....*.
gi 446460877 351 TAGQDADALQYYQLAL 366
Cdd:COG2956   88 KAGLLDRAEELLEKLL 103
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 261-366 3.03e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.13  E-value: 3.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 261 DTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmran 340
Cdd:COG2956  140 GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA----- 214

                         90       100
                 ....*....|....*....|....*.
gi 446460877 341 sYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG2956  215 -LPRLAELYEKLGDPEEALELLRKAL 239
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 272-369 1.60e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.20  E-value: 1.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 272 GEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmransYYNIAKIYET 351
Cdd:COG2956   49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEA------LRLLAEIYEQ 122

                         90
                 ....*....|....*...
gi 446460877 352 AGQDADALQYYQLALHDA 369
Cdd:COG2956  123 EGDWEKAIEVLERLLKLG 140
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
261-371 6.02e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 6.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 261 DTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAATMRAN 340
Cdd:COG0457  106 DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGE 185

                         90       100       110
                 ....*....|....*....|....*....|.
gi 446460877 341 SYYNIAKIYETAGQDADALQYYQLALHDAIL 371
Cdd:COG0457  186 AALALAAAEVLLALLLALEQALRKKLAILTL 216
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 272-367 7.23e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 7.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 272 GEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAatmransYYNIAKIYET 351
Cdd:COG2956  185 AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-------LLALADLLER 257

                         90
                 ....*....|....*.
gi 446460877 352 AGQDADALQYYQLALH 367
Cdd:COG2956  258 KEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
293-366 9.41e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 9.41e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446460877 293 ELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGAnaatmrANSYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD------AEALYNLGLAYLRLGRYEEALADYEQAL 69
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 272-339 2.28e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 2.28e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446460877 272 GEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLA-SGANAATMRA 339
Cdd:COG4235   58 AEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEA 126
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 274-366 9.95e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.99  E-value: 9.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 274 AVYKTGQLEQAIQLFQQATELDGN---YGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmrANSYYNIAKIYE 350
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA---PDALLKLGLSYL 78

                         90
                 ....*....|....*.
gi 446460877 351 TAGQDADALQYYQLAL 366
Cdd:COG1729   79 ELGDYDKARATLEELI 94
TPR_11 pfam13414
TPR repeat;
272-313 1.13e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.47  E-value: 1.13e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 446460877  272 GEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNG 313
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 268-329 1.46e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 1.46e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446460877 268 YNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLA 329
Cdd:COG4783   75 RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 283-366 2.45e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.23  E-value: 2.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 283 QAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGanaatmRANSYYNIAKIYETAGQDADALQYY 362
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELL 74


                 ....
gi 446460877 363 QLAL 366
Cdd:COG4235   75 ERAL 78
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
261-332 4.86e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 4.86e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446460877 261 DTQLARKYNREGEAVYKTGQLEQAIQlFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGA 332
Cdd:COG3063   22 DPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92
TPR_12 pfam13424
Tetratricopeptide repeat;
301-366 1.20e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 1.20e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446460877  301 AFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAT--MRANSYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERAL 72
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 264-365 2.60e-06

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 48.34  E-value: 2.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 264 LARKYNREGEAvyktgqLEQAIQLFQQATELDgNYGQAFSNLGLAYQKNgNIAEAIWANRKAISLASGANAATMRANSYY 343
Cdd:cd15832   44 LAKNWEEAGDA------FLKAAECQLKLDSKH-DAANAYVEAAKCYKKV-DPQEAVNCLEKAIEIYTEMGRFRQAAKHLK 115

                         90       100
                 ....*....|....*....|...
gi 446460877 344 NIAKIYETAGQDAD-ALQYYQLA 365
Cdd:cd15832  116 EIAELYENELGDLDkAIEAYEQA 138
COG3899 COG3899
Predicted ATPase [General function prediction only];
259-369 5.68e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 48.32  E-value: 5.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  259 SGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLG-----------LAYQKNGNIAEAIWANRKAIS 327
Cdd:COG3899   739 PEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGnppasarayanLGLLLLGDYEEAYEFGELALA 818

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446460877  328 LASGANAATMRANSYYNIAKIYETAGQDADALQYYQLALHDA 369
Cdd:COG3899   819 LAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAG 860
SNAP pfam14938
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...
 264-365 1.74e-05

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.


Pssm-ID: 405606 [Multi-domain]  Cd Length: 273  Bit Score: 46.02  E-value: 1.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  264 LARKYNREGEAvyktgqLEQAIQLFQQATELDgNYGQAFSNLGLAYqKNGNIAEAIWANRKAISLASGANAATMRANSYY 343
Cdd:pfam14938  39 LAKNWEEAGEA------FEKAAECQLKLGSKD-EAANAYVEAAKCY-KKVDPEEAVRALEKAIEIYTEMGRFRRAAKHKK 110

                          90       100
                  ....*....|....*....|...
gi 446460877  344 NIAKIYETAGQDAD-ALQYYQLA 365
Cdd:pfam14938 111 EIAELYEQELGDLEkAIEAYEQA 133
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 264-366 2.37e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.18  E-value: 2.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 264 LARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmransYY 343
Cdd:COG5010   19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL------YY 92

                         90       100
                 ....*....|....*....|...
gi 446460877 344 NIAKIYETAGQDADALQYYQLAL 366
Cdd:COG5010   93 NLALLYSRSGDKDEAKEYYEKAL 115
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 278-366 3.42e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 3.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 278 TGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmranSYYNIAKIYEtaGQdaD 357
Cdd:cd24142   13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYE-----KYLYLGQLSG--GE--E 83


                 ....*....
gi 446460877 358 ALQYYQLAL 366
Cdd:cd24142   84 ALQYYEKGI 92
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 264-366 8.20e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 8.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 264 LARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAAtmransYY 343
Cdd:COG3914   43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEA------LF 116

                         90       100
                 ....*....|....*....|...
gi 446460877 344 NIAKIYETAGQDADALQYYQLAL 366
Cdd:COG3914  117 NLGNLLLALGRLEEALAALRRAL 139
TPR_12 pfam13424
Tetratricopeptide repeat;
263-329 1.34e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.06  E-value: 1.34e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446460877  263 QLARKYNREGEAVYKTGQLEQAIQLFQQATEL--------DGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLA 329
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 254-366 1.48e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 43.36  E-value: 1.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 254 PAMQNSGDTQLARKYNRegeavYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGAN 333
Cdd:COG3071  218 EALKRQWDPRLVRLYGR-----LQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAE 292

                         90       100       110
                 ....*....|....*....|....*....|...
gi 446460877 334 AatmransYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:COG3071  293 A-------YAELARLLEQLGDPEEAAEHYRKAL 318
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 274-367 2.72e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 42.30  E-value: 2.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  274 AVYKtGQLEQAIQLFQQATEL--DGNY---GQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAATMRANSYYNIAKI 348
Cdd:pfam17874  11 AISK-GDAERALELAEQALALlpEDDLlarGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEI 89

                          90
                  ....*....|....*....
gi 446460877  349 YETAGQDADALQYYQLALH 367
Cdd:pfam17874  90 LRAQGRLHQALETYQQALQ 108
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 306-366 6.69e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.04  E-value: 6.69e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446460877 306 GLAYQKNGNIAEAIWANRKAISLASGANAatmRANSYYNIAKIYETAGQDADALQYYQLAL 366
Cdd:PRK02603  42 GMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQAL 99
TPR_17 pfam13431
Tetratricopeptide repeat;
287-319 3.04e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.83  E-value: 3.04e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 446460877  287 LFQQATELDGNYGQAFSNLGLAYQKNGNIAEAI 319
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 265-297 3.18e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 3.18e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 446460877  265 ARKYNREGEAVYKTGQLEQAIQLFQQATELDGN 297
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_19 pfam14559
Tetratricopeptide repeat;
279-319 3.52e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.64  E-value: 3.52e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 446460877  279 GQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAI 319
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAE 42
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 249-342 3.66e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 3.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  249 STPASPAM-QNSGDTQLarkYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAIS 327
Cdd:TIGR02917 349 IATLSPALgLDPDDPAA---LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425

                          90
                  ....*....|....*.
gi 446460877  328 LAS-GANAATMRANSY 342
Cdd:TIGR02917 426 LDPeLGRADLLLILSY 441
TPR_1 pfam00515
Tetratricopeptide repeat;
265-298 3.88e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 3.88e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 446460877  265 ARKYNREGEAVYKTGQLEQAIQLFQQATELDGNY 298
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 227-317 6.57e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 36.96  E-value: 6.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877 227 NFNDTTLGV-RDLATVIMPATGSSTPA------SPAMQNSGDTQLARKYNRE-----------GEAVYK-------TGQL 281
Cdd:PRK02603   9 NFIDKSFTVmADLILKILPINKKAKEAfvyyrdGMSAQADGEYAEALENYEEalkleedpndrSYILYNmgiiyasNGEH 88

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 446460877 282 EQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAE 317
Cdd:PRK02603  89 DKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAE 124
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 257-319 7.79e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 35.74  E-value: 7.79e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446460877 257 QNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGN---YGQAFSNLGLAYQKNGNIAEAI 319
Cdd:COG1729   22 RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKAR 87
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 271-365 7.81e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 38.53  E-value: 7.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446460877  271 EGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAI-----SLASGANAATMRANSYYni 345
Cdd:PRK11447  275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALaldphSSNRDKWESLLKVNRYW-- 352

                          90       100
                  ....*....|....*....|....*
gi 446460877  346 AKIYE-----TAGQDADALQYYQLA 365
Cdd:PRK11447  353 LLIQQgdaalKANNLAQAERLYQQA 377
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 270-332 8.24e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 34.62  E-value: 8.24e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446460877  270 REGEAVYKTGQLEQAIQLFQQATELDGN---YGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGA 332
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_1 pfam00515
Tetratricopeptide repeat;
300-328 9.78e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.55  E-value: 9.78e-03
                          10        20
                  ....*....|....*....|....*....
gi 446460877  300 QAFSNLGLAYQKNGNIAEAIWANRKAISL 328
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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