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Conserved domains on  [gi|446465051|ref|WP_000542905|]
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MULTISPECIES: transcriptional regulator PlcR [Bacillus cereus group]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 15193285)

helix-turn-helix domain-containing protein such as an XRE (Xenobiotic Response Element) family transcriptional regulator

Gene Ontology:  GO:0003677
PubMed:  10473770|15808743|10556324

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNPP_C super family cl40071
RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor ...
 79-271 2.20e-45

RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor includes five TPR units of different lengths. This entry represents the TPR containing domain as a whole. This family is called RNPP after (Rapm NprR, PrgX, and PlcR).


The actual alignment was detected with superfamily member pfam18768:

Pssm-ID: 436723  Cd Length: 213  Bit Score: 152.30  E-value: 2.20e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051   79 KDRIIMLCKEKKYKEIYNKVWNELKKEEY-HPELQQFLQWQYHVAAYILKKIDYEYCISELKKLL-NQQLAGIDVYQNLY 156
Cdd:pfam18768   1 ANEIESASREKQYEEIYQRIEKLLQNQDKfHIEFSKYLLWQYTVAAFHLGRISAEECITELNLLLlEKDDTNIRHHLHLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051  157 IENAIANIYAENGHFKKSIELYENILKQLEVLHDNKE-FDVKVRHNHAKALYLDNQYEEALCHANKAIELSCQINSMTLI 235
Cdd:pfam18768  81 IKNSLANLYAEEGKTNQSIQYYQQVITSSEANELDYDvLKIKVMYNYSKLLYDKNDYDSSLEVINQGIASSIEKENMSLL 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 446465051  236 GQLYYRKVECLEKLECDRAEIEDACEKAYFFFDILG 271
Cdd:pfam18768 161 GQLYYQRGECLEKLDGSEEEIAESYQRALFFFELLN 196
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
3-65 4.70e-12

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


:

Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 60.78  E-value: 4.70e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446465051   3 AEKLGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFYE 65
Cdd:COG1396    5 KKALGERLRELRKARGLTQEELAERLgVSRSTISRIERGRRNPSLETLLKLAKALGVSLDELLG 68
 
Name Accession Description Interval E-value
RNPP_C pfam18768
RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor ...
 79-271 2.20e-45

RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor includes five TPR units of different lengths. This entry represents the TPR containing domain as a whole. This family is called RNPP after (Rapm NprR, PrgX, and PlcR).


Pssm-ID: 436723  Cd Length: 213  Bit Score: 152.30  E-value: 2.20e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051   79 KDRIIMLCKEKKYKEIYNKVWNELKKEEY-HPELQQFLQWQYHVAAYILKKIDYEYCISELKKLL-NQQLAGIDVYQNLY 156
Cdd:pfam18768   1 ANEIESASREKQYEEIYQRIEKLLQNQDKfHIEFSKYLLWQYTVAAFHLGRISAEECITELNLLLlEKDDTNIRHHLHLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051  157 IENAIANIYAENGHFKKSIELYENILKQLEVLHDNKE-FDVKVRHNHAKALYLDNQYEEALCHANKAIELSCQINSMTLI 235
Cdd:pfam18768  81 IKNSLANLYAEEGKTNQSIQYYQQVITSSEANELDYDvLKIKVMYNYSKLLYDKNDYDSSLEVINQGIASSIEKENMSLL 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 446465051  236 GQLYYRKVECLEKLECDRAEIEDACEKAYFFFDILG 271
Cdd:pfam18768 161 GQLYYQRGECLEKLDGSEEEIAESYQRALFFFELLN 196
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
3-65 4.70e-12

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 60.78  E-value: 4.70e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446465051   3 AEKLGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFYE 65
Cdd:COG1396    5 KKALGERLRELRKARGLTQEELAERLgVSRSTISRIERGRRNPSLETLLKLAKALGVSLDELLG 68
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 7-63 1.42e-09

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 52.94  E-value: 1.42e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 446465051   7 GSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHF 63
Cdd:cd00093    1 GERLKELRKEKGLTQEELAEKLgVSRSTISRIENGKRNPSLETLEKLAKALGVSLDEL 58
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
9-63 1.46e-09

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 52.91  E-value: 1.46e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 446465051     9 EIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHF 63
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLgVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDEL 56
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 10-60 6.13e-08

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 48.31  E-value: 6.13e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 446465051   10 IKKIRMMRGLTQKQLSENIC-HQSEVSRIESGAVYPSMDILQGIAAKLQVPI 60
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGvSRSTISKIENGKREPSLETLKKLAEALGVSL 52
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 88-225 8.28e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.75  E-value: 8.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051  88 EKKYKEIYNKVWNELKKEEYHPELQQFLQWQYHVAAYILKKI-----DYEYCISELKKLLNQQLAgIDVYQ--------N 154
Cdd:COG3914   33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALlllaaLLELAALLLQALGRYEEA-LALYRralalnpdN 111

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446465051 155 LYIENAIANIYAENGHFKKSIELYENILKqlevLHDNkefDVKVRHNHAKALYLDNQYEEALCHANKAIEL 225
Cdd:COG3914  112 AEALFNLGNLLLALGRLEEALAALRRALA----LNPD---FAEAYLNLGEALRRLGRLEEAIAALRRALEL 175
CxxCG_CxxCG_HTH TIGR03830
putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of ...
 2-45 8.50e-03

putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.


Pssm-ID: 274805 [Multi-domain]  Cd Length: 127  Bit Score: 35.68  E-value: 8.50e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 446465051    2 HAEKLGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPS 45
Cdd:TIGR03830  62 DGLLTGPEIRRIRKKLGLSQREAAELLgGGVNAFSRYERGEVRPS 106
 
Name Accession Description Interval E-value
RNPP_C pfam18768
RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor ...
 79-271 2.20e-45

RNPP family C-terminal domain; The bacterial PIcR helix-turn-helix transcription factor includes five TPR units of different lengths. This entry represents the TPR containing domain as a whole. This family is called RNPP after (Rapm NprR, PrgX, and PlcR).


Pssm-ID: 436723  Cd Length: 213  Bit Score: 152.30  E-value: 2.20e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051   79 KDRIIMLCKEKKYKEIYNKVWNELKKEEY-HPELQQFLQWQYHVAAYILKKIDYEYCISELKKLL-NQQLAGIDVYQNLY 156
Cdd:pfam18768   1 ANEIESASREKQYEEIYQRIEKLLQNQDKfHIEFSKYLLWQYTVAAFHLGRISAEECITELNLLLlEKDDTNIRHHLHLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051  157 IENAIANIYAENGHFKKSIELYENILKQLEVLHDNKE-FDVKVRHNHAKALYLDNQYEEALCHANKAIELSCQINSMTLI 235
Cdd:pfam18768  81 IKNSLANLYAEEGKTNQSIQYYQQVITSSEANELDYDvLKIKVMYNYSKLLYDKNDYDSSLEVINQGIASSIEKENMSLL 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 446465051  236 GQLYYRKVECLEKLECDRAEIEDACEKAYFFFDILG 271
Cdd:pfam18768 161 GQLYYQRGECLEKLDGSEEEIAESYQRALFFFELLN 196
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
3-65 4.70e-12

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 60.78  E-value: 4.70e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446465051   3 AEKLGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFYE 65
Cdd:COG1396    5 KKALGERLRELRKARGLTQEELAERLgVSRSTISRIERGRRNPSLETLLKLAKALGVSLDELLG 68
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 7-63 1.42e-09

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 52.94  E-value: 1.42e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 446465051   7 GSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHF 63
Cdd:cd00093    1 GERLKELRKEKGLTQEELAEKLgVSRSTISRIENGKRNPSLETLEKLAKALGVSLDEL 58
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
9-63 1.46e-09

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 52.91  E-value: 1.46e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 446465051     9 EIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHF 63
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLgVSRSTLSRIENGKRKPSLETLKKLAKALGVSLDEL 56
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
3-60 7.80e-09

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 51.39  E-value: 7.80e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446465051   3 AEKLGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPI 60
Cdd:COG1476    2 KKKLGNRLKELRKERGLTQEELAELLgVSRQTISAIENGKYNPSLELALKIARALGVSL 60
aMBF1 COG1813
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ...
 3-61 3.35e-08

Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441418 [Multi-domain]  Cd Length: 70  Bit Score: 49.55  E-value: 3.35e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051   3 AEKLGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPII 61
Cdd:COG1813   10 VEDYGERIREAREARGLSQEELAEKLgVSESTIRRIERGEATPSLDTLRKLEKALGISLA 69
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 10-60 6.13e-08

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 48.31  E-value: 6.13e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 446465051   10 IKKIRMMRGLTQKQLSENIC-HQSEVSRIESGAVYPSMDILQGIAAKLQVPI 60
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGvSRSTISKIENGKREPSLETLKKLAEALGVSL 52
AF2118 COG3620
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ...
 4-56 6.11e-05

Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription];


Pssm-ID: 442838 [Multi-domain]  Cd Length: 95  Bit Score: 41.16  E-value: 6.11e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446465051   4 EKLGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKL 56
Cdd:COG3620   16 DTLGEALRLMRKELGLSQLPVAELVgVSQSDILRIESGKRDPTVSTLEKIAEAL 69
TPR_12 pfam13424
Tetratricopeptide repeat;
157-225 3.69e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 3.69e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051  157 IENAIANIYAENGHFKKSIELYENILKQLEVLH-DNKEFDVKVRHNHAKALYLDNQYEEALCHANKAIEL 225
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 88-225 8.28e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.75  E-value: 8.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051  88 EKKYKEIYNKVWNELKKEEYHPELQQFLQWQYHVAAYILKKI-----DYEYCISELKKLLNQQLAgIDVYQ--------N 154
Cdd:COG3914   33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALlllaaLLELAALLLQALGRYEEA-LALYRralalnpdN 111

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446465051 155 LYIENAIANIYAENGHFKKSIELYENILKqlevLHDNkefDVKVRHNHAKALYLDNQYEEALCHANKAIEL 225
Cdd:COG3914  112 AEALFNLGNLLLALGRLEEALAALRRALA----LNPD---FAEAYLNLGEALRRLGRLEEAIAALRRALEL 175
HTH_31 pfam13560
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 6-59 9.12e-04

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433309 [Multi-domain]  Cd Length: 64  Bit Score: 36.74  E-value: 9.12e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446465051    6 LGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVY-PSMDILQGIAAKLQVP 59
Cdd:pfam13560   2 LGARLRRLRERAGLSQEALARRLgVSRSTLSRLETGRRGrPSPAVVERLARALGVD 57
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
120-224 1.85e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.09  E-value: 1.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051 120 HVAAYILKKIDYEYCISELKKllnqQLAGIDVYQNLYienAIANIYAENGHFKKSIELYENILKqlevlhDNKEFDVKVR 199
Cdd:COG4700   61 RVQRAARNALDPGRELRELEK----ALEFADTVQNRV---RLADALLELGRYDEAIELYEEALT------GIFADDPHIL 127

                         90       100
                 ....*....|....*....|....*
gi 446465051 200 HNHAKALYLDNQYEEALCHANKAIE 224
Cdd:COG4700  128 LGLAQALFELGRYAEALETLEKLIA 152
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 119-225 2.14e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.59  E-value: 2.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465051 119 YHVAAYILKKI-DYEYCISELKKLLNQQLAGIDVYQNLyienaiANIYAENGHFKKSIELYENILKQlevlhdnKEFDVK 197
Cdd:COG3914  115 LFNLGNLLLALgRLEEALAALRRALALNPDFAEAYLNL------GEALRRLGRLEEAIAALRRALEL-------DPDNAE 181

                         90       100
                 ....*....|....*....|....*...
gi 446465051 198 VRHNHAKALYLDNQYEEALCHANKAIEL 225
Cdd:COG3914  182 ALNNLGNALQDLGRLEEAIAAYRRALEL 209
CxxCG_CxxCG_HTH TIGR03830
putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of ...
 2-45 8.50e-03

putative zinc finger/helix-turn-helix protein, YgiT family; This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.


Pssm-ID: 274805 [Multi-domain]  Cd Length: 127  Bit Score: 35.68  E-value: 8.50e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 446465051    2 HAEKLGSEIKKIRMMRGLTQKQLSENI-CHQSEVSRIESGAVYPS 45
Cdd:TIGR03830  62 DGLLTGPEIRRIRKKLGLSQREAAELLgGGVNAFSRYERGEVRPS 106
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
1-56 9.71e-03

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 34.14  E-value: 9.71e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446465051   1 MHAEKL-GSEIKKIRMMRGLTQKQLSE--NICHQSeVSRIESGAVYPSmdilqGIAAKL 56
Cdd:COG2944    1 MTKKPLtPEEIRALRERLGLSQAEFAAllGVSVST-VRRWEQGRRKPS-----GAALKL 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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