3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR; These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465299   2 HALVIGGT-GMLKRVSMWLCEQGFHVSIIGRDEVKLENVK---RMSSTLE--NITCLSLDYHNDEDVKLAIKSTVEKNGP 75
Cdd:cd08939    3 HVLITGGSsGIGKALAKELVKEGANVIIVARSESKLEEAVeeiEAEANASgqKVSYISADLSDYEEVEQAFAQAVEKGGP 82

                 ....*
gi 446465299  76 ITLAV 80
Cdd:cd08939   83 PDLVV 87

This enzymatic domain is part of bacterial polyketide synthases; It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465299     4 LVIGGTGML-KRVSMWLCEQGF-HVSIIGR----DEVKLENVKRMSSTLENITCLSLDYHNDEDVKLAIKSTVEKNGPIT 77
Cdd:smart00822   4 LITGGLGGLgRALARWLAERGArRLVLLSRsgpdAPGAAALLAELEAAGARVTVVACDVADRDALAAVLAAIPAVEGPLT 83

                   ....*...
gi 446465299    78 lAVawVHS 85
Cdd:smart00822  84 -GV--IHA 88

short chain dehydrogenase; Provisional

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465299   4 LVIGGT-GMLKRVSMWLCEQGFHVSIIGRDEVKLENVKRMSSTLE-NITCLSLDYHNDEDVKLAIKSTVEKNGPITLAVa 81
Cdd:PRK07677   5 IITGGSsGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPgQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALI- 83

                         90       100
                 ....*....|....*....|.
gi 446465299  82 wvhssaKHALSN-ICKELDLS 101
Cdd:PRK07677  84 ------NNAAGNfICPAEDLS 98

Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465299   2 HALVIGG-TGMLKRVSMWLCEQGFHVSIIGRDEVKLENVKR--MSSTLENITCLSLDYHNDEDVKLAIKSTVEKNGPITL 78
Cdd:cd05369    5 VAFITGGgTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEeiSSATGGRAHPIQCDVRDPEAVEAAVDETLKEFGKIDI 84

                 ...
gi 446465299  79 AVA 81
Cdd:cd05369   85 LIN 87

Short-chain dehydrogenase [General function prediction only];

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446465299   2 HALVIGGTGML-KRVSMWLCEQGFHVSIIGRDEVKLENVK-RMSSTLENITCLSLDYHNDEDVKLAIKSTVEKNGPITLA 79
Cdd:COG0300    7 TVLITGASSGIgRALARALAARGARVVLVARDAERLEALAaELRAAGARVEVVALDVTDPDAVAALAEAVLARFGPIDVL 86

                 .
gi 446465299  80 V 80
Cdd:COG0300   87 V 87

Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis];

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446465299   2 HALVIGGTGML-KRVSMWLCEQGFHVSIIGRDEVKLENVKRmsstLENITCLSLDYHNDEDVKLAIK 67
Cdd:COG0451    1 RILVTGGAGFIgSHLARRLLARGHEVVGLDRSPPGAANLAA----LPGVEFVRGDLRDPEALAAALA 63