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Conserved domains on  [gi|446467078|ref|WP_000544932|]
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MULTISPECIES: DmsC/YnfH family molybdoenzyme membrane anchor subunit [Salmonella]

Protein Classification

dimethyl sulfoxide reductase anchor subunit family protein( domain architecture ID 10007172)

dimethyl sulfoxide (DMSO) reductase anchor subunit family protein similar to Escherichia coli dimethyl sulfoxide (DMSO) reductase anchor subunit DmsC which anchors the DMSO reductase complex to the periplasmic side of the inner membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
3-252 4.18e-27

DMSO reductase anchor subunit DmsC [Energy production and conversion];


:

Pssm-ID: 442531  Cd Length: 282  Bit Score: 105.74  E-value: 4.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078   3 ELPLVFFTVFTQSAVGAFILLLIGGAMRLVAPRRKAIGLFSVMCLFGLGVIVG---TFHVGQPLRALNMLLRVGHSPMSN 79
Cdd:COG3302    4 EWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKRLLRALLLALVLLGVGLlasTFHLGHPLRAWRAFSNLRTSWLSR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078  80 EIVLSAA-FAALGGLGALGLLLNRATPLCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALA 158
Cdd:COG3302   84 EIVAAVLfFALAGLYALLAWLGKLPGGLRKLLGLLAALLGLALVFAMAMIYQIKTVPTWNTPLTPLNFLLTALALGALLA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078 159 ALF--------GVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAAQH---------SWFTAQAILLAAGVVGVVVC 221
Cdd:COG3302  164 ALLlalagvdlRALKALALLALLALVLALAVLVAYLARLASIGSATQTAAAlltrefghlLALRLVLLALGFVLPLLPLL 243

                        250       260       270
                 ....*....|....*....|....*....|.
gi 446467078 222 ARLKSSAAVLAMTAVVVIAAELAGRIAFYNL 252
Cdd:COG3302  244 RGSTAALALLALAFALVLAGELVGRWLFYAL 274
 
Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
3-252 4.18e-27

DMSO reductase anchor subunit DmsC [Energy production and conversion];


Pssm-ID: 442531  Cd Length: 282  Bit Score: 105.74  E-value: 4.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078   3 ELPLVFFTVFTQSAVGAFILLLIGGAMRLVAPRRKAIGLFSVMCLFGLGVIVG---TFHVGQPLRALNMLLRVGHSPMSN 79
Cdd:COG3302    4 EWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKRLLRALLLALVLLGVGLlasTFHLGHPLRAWRAFSNLRTSWLSR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078  80 EIVLSAA-FAALGGLGALGLLLNRATPLCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALA 158
Cdd:COG3302   84 EIVAAVLfFALAGLYALLAWLGKLPGGLRKLLGLLAALLGLALVFAMAMIYQIKTVPTWNTPLTPLNFLLTALALGALLA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078 159 ALF--------GVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAAQH---------SWFTAQAILLAAGVVGVVVC 221
Cdd:COG3302  164 ALLlalagvdlRALKALALLALLALVLALAVLVAYLARLASIGSATQTAAAlltrefghlLALRLVLLALGFVLPLLPLL 243

                        250       260       270
                 ....*....|....*....|....*....|.
gi 446467078 222 ARLKSSAAVLAMTAVVVIAAELAGRIAFYNL 252
Cdd:COG3302  244 RGSTAALALLALAFALVLAGELVGRWLFYAL 274
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
 2-252 2.84e-20

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


Pssm-ID: 398575  Cd Length: 275  Bit Score: 87.11  E-value: 2.84e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078    2 HELPLVFFTVFTQSAVGAFILLLIGG-AMRLVAPRRKAI-GLFSVMCLFGLGVIVGTFHVGQPLRALNMLLRVGHSPMSN 79
Cdd:pfam04976   6 HELPLVIFTVLAQSVVGAFIVFAFVLlFGKNQALRQYVHkSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVGASMLSN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078   80 EIVLSAAFAALGGLGALGLLLNRATP-LCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALA 158
Cdd:pfam04976  86 EIAAGAIFFALAGLYWLVAILGKLPPaLGHLWLIVTMALGIIFMYMMNMVYHIDTVPTWNTGITTWGFYLTVLLGGPTLG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078  159 ALF--------GVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAA-----QHSWFTAQAILLAAGVVGVVVCARLK 225
Cdd:pfam04976 166 YALlyfarvdtGTFLFLPFLFVLALTLNAIVIIYQGFSLATIHSSVQQAaalvpDYATLIVLRYVLLFVALLLLLIPLYV 245

                         250       260       270
                  ....*....|....*....|....*....|
gi 446467078  226 SSAAVLAMTAVVVI---AAELAGRIAFYNL 252
Cdd:pfam04976 246 TRVPNVPLLVLSVLlilAGEMIGRVLFYGL 275
 
Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
3-252 4.18e-27

DMSO reductase anchor subunit DmsC [Energy production and conversion];


Pssm-ID: 442531  Cd Length: 282  Bit Score: 105.74  E-value: 4.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078   3 ELPLVFFTVFTQSAVGAFILLLIGGAMRLVAPRRKAIGLFSVMCLFGLGVIVG---TFHVGQPLRALNMLLRVGHSPMSN 79
Cdd:COG3302    4 EWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKRLLRALLLALVLLGVGLlasTFHLGHPLRAWRAFSNLRTSWLSR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078  80 EIVLSAA-FAALGGLGALGLLLNRATPLCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALA 158
Cdd:COG3302   84 EIVAAVLfFALAGLYALLAWLGKLPGGLRKLLGLLAALLGLALVFAMAMIYQIKTVPTWNTPLTPLNFLLTALALGALLA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078 159 ALF--------GVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAAQH---------SWFTAQAILLAAGVVGVVVC 221
Cdd:COG3302  164 ALLlalagvdlRALKALALLALLALVLALAVLVAYLARLASIGSATQTAAAlltrefghlLALRLVLLALGFVLPLLPLL 243

                        250       260       270
                 ....*....|....*....|....*....|.
gi 446467078 222 ARLKSSAAVLAMTAVVVIAAELAGRIAFYNL 252
Cdd:COG3302  244 RGSTAALALLALAFALVLAGELVGRWLFYAL 274
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
 2-252 2.84e-20

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


Pssm-ID: 398575  Cd Length: 275  Bit Score: 87.11  E-value: 2.84e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078    2 HELPLVFFTVFTQSAVGAFILLLIGG-AMRLVAPRRKAI-GLFSVMCLFGLGVIVGTFHVGQPLRALNMLLRVGHSPMSN 79
Cdd:pfam04976   6 HELPLVIFTVLAQSVVGAFIVFAFVLlFGKNQALRQYVHkSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVGASMLSN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078   80 EIVLSAAFAALGGLGALGLLLNRATP-LCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALA 158
Cdd:pfam04976  86 EIAAGAIFFALAGLYWLVAILGKLPPaLGHLWLIVTMALGIIFMYMMNMVYHIDTVPTWNTGITTWGFYLTVLLGGPTLG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446467078  159 ALF--------GVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAA-----QHSWFTAQAILLAAGVVGVVVCARLK 225
Cdd:pfam04976 166 YALlyfarvdtGTFLFLPFLFVLALTLNAIVIIYQGFSLATIHSSVQQAaalvpDYATLIVLRYVLLFVALLLLLIPLYV 245

                         250       260       270
                  ....*....|....*....|....*....|
gi 446467078  226 SSAAVLAMTAVVVI---AAELAGRIAFYNL 252
Cdd:pfam04976 246 TRVPNVPLLVLSVLlilAGEMIGRVLFYGL 275
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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