NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446468431|ref|WP_000546285|]
View 

MULTISPECIES: spore coat protein [Bacillus]

Protein Classification

spore coat protein( domain architecture ID 10567508)

spore coat protein similar to Oceanobacillus iheyensis inner spore coat protein D (CotD)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Spore-coat_CotD pfam11122
Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is ...
 21-110 1.71e-14

Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is an inner spore coat protein that is expressed in the middle phase of mother cell gene expression. Along with CotD, CotH, CotS and CotT it is assumed to assemble into the loose skeleton of the matrix, between the shells of SpoIVA and CotE. Coat proteins do not share much sequence similarity between species, but this does not imply they do not share secondary, tertiary, or quaternary features.


:

Pssm-ID: 371387  Cd Length: 86  Bit Score: 64.23  E-value: 1.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468431   21 APVIHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVVdpidPGFGGGCGPCGHGHHHHGHQISPF 100
Cdd:pfam11122   1 PTVVHPTKQNVVQTTSEYIVPEIHPTHTTHVHNHVVKNVHFFPHSESDQEQT----VNQQYNCGPNVPDSSNVAGAMAPP 76

                          90
                  ....*....|
gi 446468431  101 GPGPNVSPFG 110
Cdd:pfam11122  77 GMGPVVGAMS 86
 
Name Accession Description Interval E-value
Spore-coat_CotD pfam11122
Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is ...
 21-110 1.71e-14

Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is an inner spore coat protein that is expressed in the middle phase of mother cell gene expression. Along with CotD, CotH, CotS and CotT it is assumed to assemble into the loose skeleton of the matrix, between the shells of SpoIVA and CotE. Coat proteins do not share much sequence similarity between species, but this does not imply they do not share secondary, tertiary, or quaternary features.


Pssm-ID: 371387  Cd Length: 86  Bit Score: 64.23  E-value: 1.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468431   21 APVIHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVVdpidPGFGGGCGPCGHGHHHHGHQISPF 100
Cdd:pfam11122   1 PTVVHPTKQNVVQTTSEYIVPEIHPTHTTHVHNHVVKNVHFFPHSESDQEQT----VNQQYNCGPNVPDSSNVAGAMAPP 76

                          90
                  ....*....|
gi 446468431  101 GPGPNVSPFG 110
Cdd:pfam11122  77 GMGPVVGAMS 86
CotD COG5879
Spore coat protein CotD [Cell cycle control, cell division, chromosome partitioning];
1-72 3.12e-14

Spore coat protein CotD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444581  Cd Length: 87  Bit Score: 63.55  E-value: 3.12e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446468431   1 MHHCHPCfgghkpvgpicTTAPVIHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVV 72
Cdd:COG5879    1 PMHCPPH-----------VTPPIVHPTKCNVQHNFSETVVPHIHPSHTTTVNHHVYKHQHYFPHTTSVVNEV 61
 
Name Accession Description Interval E-value
Spore-coat_CotD pfam11122
Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is ...
 21-110 1.71e-14

Inner spore coat protein D; This family is conserved in the Enterobacteriaceae family. CotD is an inner spore coat protein that is expressed in the middle phase of mother cell gene expression. Along with CotD, CotH, CotS and CotT it is assumed to assemble into the loose skeleton of the matrix, between the shells of SpoIVA and CotE. Coat proteins do not share much sequence similarity between species, but this does not imply they do not share secondary, tertiary, or quaternary features.


Pssm-ID: 371387  Cd Length: 86  Bit Score: 64.23  E-value: 1.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468431   21 APVIHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVVdpidPGFGGGCGPCGHGHHHHGHQISPF 100
Cdd:pfam11122   1 PTVVHPTKQNVVQTTSEYIVPEIHPTHTTHVHNHVVKNVHFFPHSESDQEQT----VNQQYNCGPNVPDSSNVAGAMAPP 76

                          90
                  ....*....|
gi 446468431  101 GPGPNVSPFG 110
Cdd:pfam11122  77 GMGPVVGAMS 86
CotD COG5879
Spore coat protein CotD [Cell cycle control, cell division, chromosome partitioning];
1-72 3.12e-14

Spore coat protein CotD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444581  Cd Length: 87  Bit Score: 63.55  E-value: 3.12e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446468431   1 MHHCHPCfgghkpvgpicTTAPVIHPTKQCVTHSFSTTVVPHIFPTHTTHVHHQQIKNQNFFPQTNSNVNVV 72
Cdd:COG5879    1 PMHCPPH-----------VTPPIVHPTKCNVQHNFSETVVPHIHPSHTTTVNHHVYKHQHYFPHTTSVVNEV 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH